Wall clock time and date at job start Mon Mar 30 2020 20:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47162 * 2 1 4 4 C 1.50704 * 109.47259 * 119.99943 * 2 1 3 5 5 H 1.07997 * 120.00093 * 120.00458 * 4 2 1 6 6 C 1.37881 * 119.99937 * 299.99523 * 4 2 1 7 7 N 1.31519 * 119.99840 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99961 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46879 * 90.00455 * 8 6 4 10 10 H 1.48499 * 109.46802 * 210.00185 * 8 6 4 11 11 H 1.48493 * 109.47266 * 330.00308 * 8 6 4 12 12 C 1.50698 * 109.47242 * 239.99824 * 2 1 3 13 13 C 1.34766 * 125.76046 * 119.99421 * 12 2 1 14 14 C 1.40653 * 106.64309 * 179.97438 * 13 12 2 15 15 C 1.34889 * 107.15538 * 0.06132 * 14 13 12 16 16 O 1.33832 * 108.29888 * 359.91378 * 15 14 13 17 17 C 1.50931 * 123.89857 * 179.82108 * 15 14 13 18 18 C 1.53323 * 108.43076 * 343.31763 * 17 15 14 19 19 C 1.53118 * 109.54308 * 50.02677 * 18 17 15 20 20 C 1.50633 * 128.28330 * 180.02562 * 14 13 12 21 21 H 1.08997 * 109.47132 * 60.00311 * 1 2 3 22 22 H 1.09000 * 109.47025 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47207 * 299.99951 * 1 2 3 24 24 H 0.96999 * 119.99901 * 179.97438 * 7 6 4 25 25 H 1.08001 * 126.68005 * 359.97438 * 13 12 2 26 26 H 1.09004 * 109.67271 * 103.03374 * 17 15 14 27 27 H 1.09001 * 109.67429 * 223.52647 * 17 15 14 28 28 H 1.08997 * 109.45084 * 290.00452 * 18 17 15 29 29 H 1.09005 * 109.46360 * 170.05517 * 18 17 15 30 30 H 1.09001 * 109.48079 * 170.03286 * 19 18 17 31 31 H 1.08993 * 109.48222 * 49.99886 * 19 18 17 32 32 H 1.09000 * 109.68112 * 43.91157 * 20 14 13 33 33 H 1.08995 * 109.68296 * 283.35276 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9429 0.8298 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.6298 -0.5458 4.4123 10 1 1.3432 -0.9490 5.1120 11 1 2.4859 -2.5660 3.7121 12 6 2.0323 -0.7104 -1.2304 13 6 2.8103 -0.1704 -2.1892 14 6 3.0367 -1.1809 -3.1410 15 6 2.3850 -2.2823 -2.7145 16 8 1.7801 -1.9908 -1.5569 17 6 2.3731 -3.5947 -3.4598 18 6 2.8316 -3.3384 -4.9002 19 6 4.1334 -2.5323 -4.8876 20 6 3.8428 -1.1031 -4.4110 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 0.7083 1.1611 3.4844 25 1 3.1867 0.8415 -2.2207 26 1 3.0536 -4.2967 -2.9778 27 1 1.3635 -4.0058 -3.4629 28 1 2.0625 -2.7780 -5.4317 29 1 2.9991 -4.2910 -5.4030 30 1 4.5518 -2.5018 -5.8936 31 1 4.8464 -3.0039 -4.2114 32 1 4.7811 -0.5825 -4.2190 33 1 3.2757 -0.5695 -5.1737 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261244066.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:28 Heat of formation + Delta-G solvation = -15.756488 kcal Electronic energy + Delta-G solvation = -14853.375042 eV Core-core repulsion = 12458.482929 eV Total energy + Delta-G solvation = -2394.892113 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.88010 -36.85572 -34.36308 -32.29492 -30.79734 -29.79344 -27.40695 -25.17822 -23.28763 -22.07005 -20.99654 -20.06082 -17.97790 -16.42770 -15.79015 -15.42105 -14.76480 -14.28318 -13.69285 -13.61762 -13.12185 -12.72249 -12.32299 -12.21902 -12.03342 -11.91731 -11.39336 -10.95030 -10.88943 -10.77537 -10.72367 -10.41184 -10.27291 -10.15767 -9.68206 -9.12519 -8.72307 -8.43840 -7.24589 -6.05854 -4.13153 2.59213 3.29427 3.35174 3.38265 3.45570 3.73933 4.41147 4.91642 4.94765 5.02909 5.25028 5.39932 5.51079 5.67238 5.69062 5.81100 5.87996 5.93503 6.05298 6.11087 6.23788 6.37883 6.61680 6.69710 6.81466 6.94846 7.07826 7.17342 7.39354 7.58155 7.76592 8.01655 8.14565 8.34566 8.87728 9.51486 10.99614 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.045203 B = 0.007091 C = 0.006809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.273462 B = 3947.612968 C = 4111.263491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.109 3.891 3 H 0.058 0.942 4 C -0.512 4.512 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.064 3.936 13 C -0.251 4.251 14 C -0.176 4.176 15 C -0.059 4.059 16 O -0.163 6.163 17 C -0.029 4.029 18 C -0.112 4.112 19 C -0.120 4.120 20 C -0.046 4.046 21 H 0.012 0.988 22 H 0.031 0.969 23 H 0.090 0.910 24 H 0.263 0.737 25 H 0.137 0.863 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.359 -5.368 -12.328 13.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.090 3.910 3 H 0.076 0.924 4 C -0.550 4.550 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.013 3.987 13 C -0.270 4.270 14 C -0.178 4.178 15 C -0.109 4.109 16 O -0.058 6.058 17 C -0.066 4.066 18 C -0.150 4.150 19 C -0.157 4.157 20 C -0.083 4.083 21 H 0.031 0.969 22 H 0.051 0.949 23 H 0.109 0.891 24 H 0.073 0.927 25 H 0.155 0.845 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.101 -5.462 -12.027 13.568 hybrid contribution 0.444 -0.212 0.866 0.996 sum 3.544 -5.674 -11.161 13.013 Atomic orbital electron populations 1.21789 0.97068 0.99844 1.00656 1.17672 0.93336 0.94343 0.85605 0.92382 1.21040 1.31602 1.12642 0.89741 0.92341 1.24936 0.94888 0.95000 0.99000 1.69872 1.36459 1.22866 1.23705 0.86492 0.78594 0.80138 0.82257 1.20544 1.21055 1.19827 1.23795 0.96932 0.80358 0.97647 1.21103 1.08084 1.00688 0.97078 1.19967 1.04487 0.94145 0.99173 1.21978 1.02318 0.97741 0.88854 1.83906 1.58909 1.29338 1.33674 1.20010 1.02217 0.90991 0.93427 1.21537 0.97923 1.00248 0.95276 1.21619 0.97400 0.95809 1.00881 1.19989 0.98428 0.96469 0.93446 0.96902 0.94932 0.89092 0.92736 0.84540 0.90517 0.90584 0.91533 0.91185 0.91811 0.91730 0.91365 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.95 37.16 0.33 -3.07 16 2 C 0.11 2.85 2.71 -92.92 -0.25 2.59 16 3 H 0.06 1.58 8.10 -51.93 -0.42 1.15 16 4 C -0.51 -14.52 8.55 -34.44 -0.29 -14.82 16 5 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 12 C 0.06 1.53 5.77 -35.54 -0.21 1.33 16 13 C -0.25 -5.37 10.77 -39.90 -0.43 -5.80 16 14 C -0.18 -3.33 5.95 -104.93 -0.62 -3.95 16 15 C -0.06 -1.14 7.22 -35.38 -0.26 -1.40 16 16 O -0.16 -3.81 10.65 6.37 0.07 -3.74 16 17 C -0.03 -0.42 6.30 -27.60 -0.17 -0.59 16 18 C -0.11 -1.28 5.89 -26.50 -0.16 -1.44 16 19 C -0.12 -1.40 5.92 -26.45 -0.16 -1.55 16 20 C -0.05 -0.66 6.29 -27.69 -0.17 -0.83 16 21 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.14 2.70 8.06 -52.49 -0.42 2.28 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 272.09 15.07 4.10 4.10 Total: -1.00 -29.72 272.09 -7.63 -37.35 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.92 Total: -1.71 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: -2.48 Total: -27.87 kcal Atomic # 7 Polarization: -25.29 SS G_CDS: 0.63 Total: -24.66 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: 0.07 Total: -3.74 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.72 -7.63 -37.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244066.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.594 kcal (2) G-P(sol) polarization free energy of solvation -29.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds