Wall clock time and date at job start Mon Mar 30 2020 20:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47162 * 2 1 4 4 C 1.50704 * 109.47259 * 119.99943 * 2 1 3 5 5 H 1.07997 * 120.00093 * 120.00458 * 4 2 1 6 6 C 1.37881 * 119.99937 * 299.99523 * 4 2 1 7 7 N 1.31519 * 119.99840 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99961 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46879 * 90.00455 * 8 6 4 10 10 H 1.48499 * 109.46802 * 210.00185 * 8 6 4 11 11 H 1.48493 * 109.47266 * 330.00308 * 8 6 4 12 12 C 1.50698 * 109.47242 * 239.99824 * 2 1 3 13 13 C 1.34766 * 125.76046 * 119.99421 * 12 2 1 14 14 C 1.40653 * 106.64309 * 179.97438 * 13 12 2 15 15 C 1.34889 * 107.15538 * 0.06132 * 14 13 12 16 16 O 1.33832 * 108.29888 * 359.91378 * 15 14 13 17 17 C 1.50931 * 123.89857 * 179.82108 * 15 14 13 18 18 C 1.53323 * 108.43076 * 343.31763 * 17 15 14 19 19 C 1.53118 * 109.54308 * 50.02677 * 18 17 15 20 20 C 1.50633 * 128.28330 * 180.02562 * 14 13 12 21 21 H 1.08997 * 109.47132 * 60.00311 * 1 2 3 22 22 H 1.09000 * 109.47025 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47207 * 299.99951 * 1 2 3 24 24 H 0.96999 * 119.99901 * 179.97438 * 7 6 4 25 25 H 1.08001 * 126.68005 * 359.97438 * 13 12 2 26 26 H 1.09004 * 109.67271 * 103.03374 * 17 15 14 27 27 H 1.09001 * 109.67429 * 223.52647 * 17 15 14 28 28 H 1.08997 * 109.45084 * 290.00452 * 18 17 15 29 29 H 1.09005 * 109.46360 * 170.05517 * 18 17 15 30 30 H 1.09001 * 109.48079 * 170.03286 * 19 18 17 31 31 H 1.08993 * 109.48222 * 49.99886 * 19 18 17 32 32 H 1.09000 * 109.68112 * 43.91157 * 20 14 13 33 33 H 1.08995 * 109.68296 * 283.35276 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9429 0.8298 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.6298 -0.5458 4.4123 10 1 1.3432 -0.9490 5.1120 11 1 2.4859 -2.5660 3.7121 12 6 2.0323 -0.7104 -1.2304 13 6 2.8103 -0.1704 -2.1892 14 6 3.0367 -1.1809 -3.1410 15 6 2.3850 -2.2823 -2.7145 16 8 1.7801 -1.9908 -1.5569 17 6 2.3731 -3.5947 -3.4598 18 6 2.8316 -3.3384 -4.9002 19 6 4.1334 -2.5323 -4.8876 20 6 3.8428 -1.1031 -4.4110 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 0.7083 1.1611 3.4844 25 1 3.1867 0.8415 -2.2207 26 1 3.0536 -4.2967 -2.9778 27 1 1.3635 -4.0058 -3.4629 28 1 2.0625 -2.7780 -5.4317 29 1 2.9991 -4.2910 -5.4030 30 1 4.5518 -2.5018 -5.8936 31 1 4.8464 -3.0039 -4.2114 32 1 4.7811 -0.5825 -4.2190 33 1 3.2757 -0.5695 -5.1737 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261244066.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:28 Heat of formation + Delta-G solvation = -31.447129 kcal Electronic energy + Delta-G solvation = -14854.055439 eV Core-core repulsion = 12458.482929 eV Total energy + Delta-G solvation = -2395.572510 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.50032 -38.02250 -36.38378 -33.90219 -32.69657 -30.98318 -28.93944 -27.32767 -24.66619 -23.48288 -22.52908 -21.67487 -19.46490 -18.38456 -17.46421 -16.98897 -16.60105 -15.56051 -15.26111 -14.77833 -14.67376 -14.35170 -13.99311 -13.57880 -13.46853 -13.34761 -13.07078 -12.91332 -12.81305 -12.30471 -12.27388 -11.79863 -11.72137 -11.57771 -11.35676 -11.17752 -10.58288 -10.31160 -8.87443 -8.18466 -6.34995 0.98293 1.38446 1.39030 1.50309 1.79485 2.20766 2.39099 3.08106 3.82554 3.91415 4.01745 4.09920 4.32295 4.43252 4.59656 4.64952 4.65794 4.73210 4.90647 4.91631 5.00510 5.04055 5.05187 5.15377 5.27711 5.32403 5.39813 5.46837 5.54813 5.66985 5.87776 5.91727 6.16123 6.53439 6.69361 7.32984 8.85499 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.045203 B = 0.007091 C = 0.006809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.273462 B = 3947.612968 C = 4111.263491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.108 3.892 3 H 0.037 0.963 4 C -0.536 4.536 5 H 0.043 0.957 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.961 3.039 9 H -0.271 1.271 10 H -0.274 1.274 11 H -0.274 1.274 12 C 0.019 3.981 13 C -0.249 4.249 14 C -0.185 4.185 15 C -0.064 4.064 16 O -0.190 6.190 17 C -0.033 4.033 18 C -0.107 4.107 19 C -0.117 4.117 20 C -0.047 4.047 21 H 0.030 0.970 22 H 0.025 0.975 23 H 0.072 0.928 24 H 0.267 0.733 25 H 0.145 0.855 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.321 -6.688 -13.908 16.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.090 3.910 3 H 0.055 0.945 4 C -0.574 4.574 5 H 0.061 0.939 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.785 3.215 9 H -0.197 1.197 10 H -0.199 1.199 11 H -0.199 1.199 12 C -0.031 4.031 13 C -0.268 4.268 14 C -0.186 4.186 15 C -0.113 4.113 16 O -0.087 6.087 17 C -0.070 4.070 18 C -0.144 4.144 19 C -0.154 4.154 20 C -0.084 4.084 21 H 0.049 0.951 22 H 0.044 0.956 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.163 0.837 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.063 -6.774 -13.618 15.743 hybrid contribution 0.154 0.199 1.291 1.315 sum 4.217 -6.575 -12.327 14.593 Atomic orbital electron populations 1.21616 0.96718 0.99227 1.00516 1.17442 0.93690 0.93434 0.86461 0.94473 1.21223 1.32205 1.12654 0.91344 0.93914 1.25701 0.94882 0.95664 1.01706 1.69968 1.36788 1.23662 1.24621 0.85514 0.78475 0.78786 0.78678 1.19662 1.19889 1.19893 1.23404 0.99903 0.81430 0.98343 1.21421 1.06641 1.01642 0.97060 1.20490 1.04782 0.92868 1.00451 1.23140 1.00750 1.00066 0.87394 1.83850 1.60095 1.29053 1.35712 1.20363 1.03367 0.88533 0.94765 1.21587 0.97654 1.02081 0.93111 1.21648 0.97569 0.93711 1.02498 1.20164 0.98005 0.98907 0.91339 0.95097 0.95615 0.90952 0.92326 0.83696 0.89378 0.89656 0.91412 0.87710 0.88532 0.92146 0.90756 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.39 8.95 71.98 0.64 -5.74 16 2 C 0.11 5.91 2.71 -12.29 -0.03 5.87 16 3 H 0.04 2.13 8.10 -2.39 -0.02 2.11 16 4 C -0.54 -31.50 8.55 25.60 0.22 -31.28 16 5 H 0.04 2.57 7.74 -2.91 -0.02 2.55 16 6 C 0.02 1.14 5.30 84.65 0.45 1.59 16 7 N -0.91 -52.74 11.32 21.45 0.24 -52.50 16 8 Si 0.96 44.61 29.54 68.60 2.03 46.63 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 12 C 0.02 0.97 5.77 24.89 0.14 1.11 16 13 C -0.25 -10.81 10.77 22.06 0.24 -10.57 16 14 C -0.18 -6.79 5.95 -20.07 -0.12 -6.91 16 15 C -0.06 -2.44 7.22 24.99 0.18 -2.26 16 16 O -0.19 -9.11 10.65 -0.13 0.00 -9.12 16 17 C -0.03 -0.87 6.30 30.03 0.19 -0.68 16 18 C -0.11 -2.00 5.89 30.74 0.18 -1.82 16 19 C -0.12 -2.26 5.92 30.78 0.18 -2.08 16 20 C -0.05 -1.21 6.29 29.97 0.19 -1.02 16 21 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.07 3.99 6.07 -2.39 -0.01 3.98 16 24 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 25 H 0.15 5.83 8.06 -2.91 -0.02 5.81 16 26 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 27 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.07 1.28 8.11 -2.39 -0.02 1.26 16 29 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.24 8.12 -2.39 -0.02 1.22 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -65.76 272.09 5.81 -59.96 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 1.08 Total: 8.80 kcal Atomic # 6 Polarization: -56.24 SS G_CDS: 2.46 Total: -53.78 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.24 Total: -52.50 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.00 Total: -9.12 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -65.76 5.81 -59.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244066.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.509 kcal (2) G-P(sol) polarization free energy of solvation -65.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds