Wall clock time and date at job start Mon Mar 30 2020 20:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.40172 * 125.88909 * 124.71672 * 10 9 7 12 12 C 1.34782 * 107.54039 * 179.88873 * 11 10 9 13 13 N 1.34153 * 108.15773 * 0.34523 * 12 11 10 14 14 N 1.31168 * 125.88831 * 305.02356 * 10 9 7 15 15 C 1.47737 * 124.72896 * 179.84152 * 13 12 11 16 16 C 1.53515 * 107.18752 * 294.21695 * 15 13 12 17 17 C 1.50867 * 111.24341 * 80.59577 * 16 15 13 18 18 C 1.51007 * 116.42931 * 287.44529 * 17 16 15 19 19 C 1.51947 * 127.16505 * 180.02562 * 12 11 10 20 20 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.07996 * 126.23159 * 0.02562 * 11 10 9 24 24 H 1.09002 * 109.91833 * 53.63742 * 15 13 12 25 25 H 1.08998 * 109.91638 * 174.80044 * 15 13 12 26 26 H 1.09001 * 109.12159 * 320.14584 * 16 15 13 27 27 H 1.08997 * 109.07729 * 201.02198 * 16 15 13 28 28 H 1.09004 * 108.06265 * 165.69879 * 17 16 15 29 29 H 1.09001 * 108.03392 * 49.17632 * 17 16 15 30 30 H 1.08990 * 109.18762 * 311.82042 * 18 17 16 31 31 H 1.09004 * 109.18809 * 192.55635 * 18 17 16 32 32 H 1.09007 * 109.94814 * 5.15826 * 19 12 11 33 33 H 1.08991 * 109.95451 * 126.42272 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0137 -2.6151 -0.0001 11 6 4.8977 -3.1740 -0.9333 12 6 5.0980 -4.4601 -0.5833 13 7 4.3710 -4.7125 0.5155 14 7 3.6946 -3.5435 0.8698 15 6 4.3180 -6.0161 1.2086 16 6 3.6509 -7.0126 0.2502 17 6 4.6332 -7.5300 -0.7713 18 6 5.0504 -6.5622 -1.8529 19 6 5.9789 -5.4771 -1.2895 20 1 -0.4850 0.8401 -0.0004 21 1 3.8751 -0.6798 -0.8895 22 1 3.8745 -0.6810 0.8905 23 1 5.3397 -2.6661 -1.7776 24 1 5.3274 -6.3506 1.4482 25 1 3.7288 -5.9277 2.1213 26 1 2.8281 -6.5166 -0.2648 27 1 3.2583 -7.8514 0.8250 28 1 4.1927 -8.4038 -1.2514 29 1 5.5301 -7.8538 -0.2432 30 1 4.1624 -6.0904 -2.2734 31 1 5.5722 -7.1073 -2.6395 32 1 6.5240 -4.9964 -2.1020 33 1 6.6792 -5.9186 -0.5806 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261244818.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:31 Heat of formation + Delta-G solvation = 58.018741 kcal Electronic energy + Delta-G solvation = -14786.863687 eV Core-core repulsion = 12427.463459 eV Total energy + Delta-G solvation = -2359.400228 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.85910 -36.80685 -33.33942 -32.87441 -31.38188 -28.99669 -28.13159 -25.50639 -23.67083 -22.30814 -20.53879 -19.50757 -18.21048 -16.74411 -16.44392 -15.21733 -14.44749 -14.24156 -14.07183 -14.02156 -13.41902 -12.83142 -12.70142 -12.22220 -12.08547 -11.86612 -11.66170 -11.30623 -10.93986 -10.83959 -10.69895 -10.57022 -10.26499 -9.95415 -9.52179 -9.23361 -8.47964 -8.16926 -7.79450 -5.95248 -3.92293 2.57361 3.09599 3.36989 3.44032 3.47699 3.69167 4.51747 4.54916 4.61764 4.79037 4.84353 5.12244 5.26642 5.32416 5.37396 5.43881 5.59298 5.64805 5.79624 5.87491 5.94086 6.00532 6.07996 6.23585 6.34370 6.45813 6.76612 7.05528 7.30154 7.54352 7.67624 7.80508 8.60161 8.72490 9.13101 9.64774 11.18384 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.048363 B = 0.006832 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.818548 B = 4097.092579 C = 4313.246119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.504 4.504 8 H 0.075 0.925 9 C 0.055 3.945 10 C 0.117 3.883 11 C -0.275 4.275 12 C 0.067 3.933 13 N -0.382 5.382 14 N -0.289 5.289 15 C 0.138 3.862 16 C -0.139 4.139 17 C -0.119 4.119 18 C -0.119 4.119 19 C -0.051 4.051 20 H 0.262 0.738 21 H 0.032 0.968 22 H 0.035 0.965 23 H 0.138 0.862 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.629 -14.063 -1.951 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.542 4.542 8 H 0.093 0.907 9 C 0.016 3.984 10 C -0.049 4.049 11 C -0.305 4.305 12 C -0.060 4.060 13 N -0.165 5.165 14 N -0.109 5.109 15 C 0.017 3.983 16 C -0.177 4.177 17 C -0.157 4.157 18 C -0.157 4.157 19 C -0.091 4.091 20 H 0.072 0.928 21 H 0.050 0.950 22 H 0.053 0.947 23 H 0.156 0.844 24 H 0.098 0.902 25 H 0.115 0.885 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.775 -14.377 -0.808 18.601 hybrid contribution 0.712 1.044 -0.754 1.471 sum 12.487 -13.333 -1.561 18.334 Atomic orbital electron populations 1.69908 1.06236 1.26733 1.51400 1.24985 0.94771 0.98915 0.94794 0.86815 0.80453 0.83760 0.78552 1.20159 1.21319 1.18896 1.20967 0.88300 0.94749 1.50217 0.90720 1.18245 0.97471 0.85240 0.97411 1.22877 0.93291 0.97124 0.91599 1.21075 1.09546 0.94073 1.05793 1.20858 0.97840 0.95959 0.91383 1.48747 1.36095 1.09852 1.21772 1.77581 1.18334 0.90626 1.24393 1.21981 1.01541 0.78890 0.95905 1.21697 0.99410 0.98949 0.97641 1.20799 0.99205 0.98809 0.96838 1.21298 1.00100 0.96435 0.97862 1.20613 0.95533 0.93842 0.99062 0.92777 0.94971 0.94749 0.84446 0.90178 0.88519 0.90665 0.90194 0.92030 0.92355 0.91284 0.91250 0.89490 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.76 13.96 55.43 0.77 -27.99 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.06 27.47 -169.99 -4.67 17.40 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.50 -15.24 9.62 -34.44 -0.33 -15.57 16 8 H 0.07 2.51 7.98 -52.49 -0.42 2.09 16 9 C 0.06 1.43 4.62 -29.03 -0.13 1.30 16 10 C 0.12 2.81 6.45 -82.15 -0.53 2.28 16 11 C -0.28 -5.49 10.69 -40.08 -0.43 -5.92 16 12 C 0.07 1.15 5.88 -82.19 -0.48 0.66 16 13 N -0.38 -7.04 3.64 -55.89 -0.20 -7.25 16 14 N -0.29 -6.84 12.60 33.78 0.43 -6.42 16 15 C 0.14 1.83 6.77 -3.10 -0.02 1.81 16 16 C -0.14 -1.57 5.68 -27.53 -0.16 -1.73 16 17 C -0.12 -1.13 5.09 -28.80 -0.15 -1.28 16 18 C -0.12 -1.25 5.63 -27.46 -0.15 -1.41 16 19 C -0.05 -0.60 5.95 -26.99 -0.16 -0.76 16 20 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 21 H 0.03 0.78 7.55 -51.93 -0.39 0.39 16 22 H 0.03 0.89 7.20 -51.93 -0.37 0.52 16 23 H 0.14 2.42 8.06 -52.49 -0.42 2.00 16 24 H 0.08 0.85 7.87 -51.93 -0.41 0.44 16 25 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.47 7.68 -51.93 -0.40 0.07 16 30 H 0.07 0.89 7.91 -51.93 -0.41 0.48 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 33 H 0.07 0.74 7.89 -51.93 -0.41 0.33 16 LS Contribution 269.52 15.07 4.06 4.06 Total: -1.00 -34.56 269.52 -7.19 -41.75 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -4.94 Total: -2.83 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -2.64 Total: -18.72 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 1.00 Total: -41.65 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -34.56 -7.19 -41.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244818.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.768 kcal (2) G-P(sol) polarization free energy of solvation -34.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds