Wall clock time and date at job start Mon Mar 30 2020 20:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.40172 * 125.88909 * 124.71672 * 10 9 7 12 12 C 1.34782 * 107.54039 * 179.88873 * 11 10 9 13 13 N 1.34153 * 108.15773 * 0.34523 * 12 11 10 14 14 N 1.31168 * 125.88831 * 305.02356 * 10 9 7 15 15 C 1.47737 * 124.72896 * 179.84152 * 13 12 11 16 16 C 1.53515 * 107.18752 * 294.21695 * 15 13 12 17 17 C 1.50867 * 111.24341 * 80.59577 * 16 15 13 18 18 C 1.51007 * 116.42931 * 287.44529 * 17 16 15 19 19 C 1.51947 * 127.16505 * 180.02562 * 12 11 10 20 20 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.07996 * 126.23159 * 0.02562 * 11 10 9 24 24 H 1.09002 * 109.91833 * 53.63742 * 15 13 12 25 25 H 1.08998 * 109.91638 * 174.80044 * 15 13 12 26 26 H 1.09001 * 109.12159 * 320.14584 * 16 15 13 27 27 H 1.08997 * 109.07729 * 201.02198 * 16 15 13 28 28 H 1.09004 * 108.06265 * 165.69879 * 17 16 15 29 29 H 1.09001 * 108.03392 * 49.17632 * 17 16 15 30 30 H 1.08990 * 109.18762 * 311.82042 * 18 17 16 31 31 H 1.09004 * 109.18809 * 192.55635 * 18 17 16 32 32 H 1.09007 * 109.94814 * 5.15826 * 19 12 11 33 33 H 1.08991 * 109.95451 * 126.42272 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0137 -2.6151 -0.0001 11 6 4.8977 -3.1740 -0.9333 12 6 5.0980 -4.4601 -0.5833 13 7 4.3710 -4.7125 0.5155 14 7 3.6946 -3.5435 0.8698 15 6 4.3180 -6.0161 1.2086 16 6 3.6509 -7.0126 0.2502 17 6 4.6332 -7.5300 -0.7713 18 6 5.0504 -6.5622 -1.8529 19 6 5.9789 -5.4771 -1.2895 20 1 -0.4850 0.8401 -0.0004 21 1 3.8751 -0.6798 -0.8895 22 1 3.8745 -0.6810 0.8905 23 1 5.3397 -2.6661 -1.7776 24 1 5.3274 -6.3506 1.4482 25 1 3.7288 -5.9277 2.1213 26 1 2.8281 -6.5166 -0.2648 27 1 3.2583 -7.8514 0.8250 28 1 4.1927 -8.4038 -1.2514 29 1 5.5301 -7.8538 -0.2432 30 1 4.1624 -6.0904 -2.2734 31 1 5.5722 -7.1073 -2.6395 32 1 6.5240 -4.9964 -2.1020 33 1 6.6792 -5.9186 -0.5806 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261244818.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:30 Heat of formation + Delta-G solvation = 34.563854 kcal Electronic energy + Delta-G solvation = -14787.880767 eV Core-core repulsion = 12427.463459 eV Total energy + Delta-G solvation = -2360.417308 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.30520 -37.87677 -35.32770 -34.13021 -33.09673 -30.69190 -29.57069 -26.76496 -25.23094 -23.92926 -21.42704 -21.01815 -19.72942 -18.90469 -17.82454 -16.43426 -16.11845 -15.68779 -15.25486 -15.08792 -14.86712 -14.51206 -14.07051 -13.83967 -13.69520 -13.31151 -12.94136 -12.54104 -12.46069 -12.14385 -11.98709 -11.76055 -11.66277 -11.60254 -11.47347 -11.12070 -10.77322 -9.77256 -9.29681 -8.29053 -6.34126 1.13696 1.37099 1.40642 1.53067 1.79761 2.01395 2.37351 3.04972 3.59904 3.71843 3.76563 3.92570 4.15262 4.21000 4.34284 4.47686 4.50474 4.68893 4.82080 4.83880 4.91743 4.97665 5.05456 5.12195 5.19337 5.22245 5.24327 5.41559 5.46232 5.60336 5.85605 6.27808 6.37943 6.69408 7.08332 7.27641 8.88691 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.048363 B = 0.006832 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.818548 B = 4097.092579 C = 4313.246119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.959 3.041 4 H -0.257 1.257 5 H -0.281 1.281 6 H -0.246 1.246 7 C -0.518 4.518 8 H 0.017 0.983 9 C 0.062 3.938 10 C 0.081 3.919 11 C -0.304 4.304 12 C 0.087 3.913 13 N -0.378 5.378 14 N -0.345 5.345 15 C 0.124 3.876 16 C -0.133 4.133 17 C -0.120 4.120 18 C -0.118 4.118 19 C -0.047 4.047 20 H 0.268 0.732 21 H 0.049 0.951 22 H 0.032 0.968 23 H 0.156 0.844 24 H 0.120 0.880 25 H 0.089 0.911 26 H 0.032 0.968 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.035 0.965 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.831 -15.279 -2.595 22.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.193 4.193 3 Si 0.781 3.219 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.170 1.170 7 C -0.557 4.557 8 H 0.036 0.964 9 C 0.023 3.977 10 C -0.084 4.084 11 C -0.333 4.333 12 C -0.043 4.043 13 N -0.160 5.160 14 N -0.168 5.168 15 C 0.005 3.995 16 C -0.171 4.171 17 C -0.158 4.158 18 C -0.156 4.156 19 C -0.085 4.085 20 H 0.077 0.923 21 H 0.067 0.933 22 H 0.050 0.950 23 H 0.173 0.827 24 H 0.138 0.862 25 H 0.107 0.893 26 H 0.051 0.949 27 H 0.126 0.874 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.054 0.946 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 14.980 -15.618 -1.447 21.689 hybrid contribution -0.352 1.214 -0.521 1.367 sum 14.629 -14.404 -1.968 20.624 Atomic orbital electron populations 1.70079 1.08467 1.28334 1.52495 1.26073 0.95774 1.03686 0.93779 0.85532 0.79314 0.77314 0.79739 1.18152 1.20618 1.16969 1.21111 0.90852 0.92898 1.50810 0.96423 1.18060 0.94265 0.87591 0.97778 1.22762 0.95332 0.96583 0.93706 1.21338 1.10095 0.95595 1.06290 1.21704 0.96455 0.96104 0.90009 1.49124 1.34802 1.09856 1.22231 1.77399 1.20538 0.92766 1.26067 1.22526 1.04054 0.77001 0.95912 1.21695 0.98650 0.98834 0.97933 1.20825 0.99850 0.98808 0.96283 1.21326 0.98858 0.96363 0.99021 1.20896 0.95154 0.92712 0.99769 0.92310 0.93308 0.94989 0.82651 0.86187 0.89279 0.94864 0.87369 0.90369 0.89388 0.94634 0.87926 0.87571 0.87816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.13 13.96 21.45 0.30 -62.83 16 2 C 0.00 0.19 5.47 84.66 0.46 0.66 16 3 Si 0.96 46.04 27.47 68.60 1.88 47.92 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 7 C -0.52 -33.11 9.62 25.60 0.25 -32.86 16 8 H 0.02 1.27 7.98 -2.91 -0.02 1.25 16 9 C 0.06 3.31 4.62 29.10 0.13 3.44 16 10 C 0.08 4.02 6.45 43.13 0.28 4.30 16 11 C -0.30 -12.15 10.69 21.95 0.23 -11.91 16 12 C 0.09 2.85 5.88 41.81 0.25 3.10 16 13 N -0.38 -13.87 3.64 -330.75 -1.20 -15.08 16 14 N -0.35 -17.13 12.60 -47.04 -0.59 -17.72 16 15 C 0.12 3.09 6.77 86.32 0.58 3.67 16 16 C -0.13 -2.76 5.68 30.07 0.17 -2.59 16 17 C -0.12 -1.79 5.09 29.25 0.15 -1.64 16 18 C -0.12 -2.06 5.63 30.12 0.17 -1.89 16 19 C -0.05 -0.90 5.95 30.42 0.18 -0.72 16 20 H 0.27 16.34 8.31 -92.71 -0.77 15.57 16 21 H 0.05 2.39 7.55 -2.39 -0.02 2.37 16 22 H 0.03 1.69 7.20 -2.39 -0.02 1.67 16 23 H 0.16 5.37 8.06 -2.91 -0.02 5.34 16 24 H 0.12 2.05 7.87 -2.39 -0.02 2.03 16 25 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.03 0.97 8.08 -2.39 -0.02 0.95 16 27 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.09 0.87 7.68 -2.39 -0.02 0.85 16 30 H 0.03 0.86 7.91 -2.39 -0.02 0.85 16 31 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.11 1.70 8.14 -2.38 -0.02 1.69 16 33 H 0.10 1.47 7.89 -2.39 -0.02 1.45 16 Total: -1.00 -81.94 269.52 4.27 -77.67 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: 1.02 Total: 6.48 kcal Atomic # 6 Polarization: -39.31 SS G_CDS: 2.86 Total: -36.45 kcal Atomic # 7 Polarization: -94.12 SS G_CDS: -1.50 Total: -95.62 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.88 Total: 47.92 kcal Total: -81.94 4.27 -77.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244818.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.237 kcal (2) G-P(sol) polarization free energy of solvation -81.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds