Wall clock time and date at job start Mon Mar 30 2020 20:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47997 * 2 1 4 4 C 1.53117 * 109.47972 * 239.97371 * 2 1 3 5 5 C 1.53338 * 109.52576 * 170.03243 * 4 2 1 6 6 C 1.50894 * 108.44255 * 50.06685 * 5 4 2 7 7 O 1.33828 * 127.80828 * 163.23124 * 6 5 4 8 8 C 1.34518 * 109.41939 * 180.02562 * 7 6 5 9 9 C 1.50700 * 125.76157 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47332 * 269.98399 * 9 8 7 11 11 H 1.07997 * 120.00391 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00009 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00193 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00077 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47486 * 89.99836 * 14 12 10 16 16 H 1.48501 * 109.47014 * 209.99861 * 14 12 10 17 17 H 1.48502 * 109.47066 * 329.99486 * 14 12 10 18 18 C 1.34770 * 108.48285 * 359.96425 * 8 7 6 19 19 C 1.34894 * 123.89451 * 343.21831 * 6 5 4 20 20 C 1.50646 * 124.55495 * 359.90914 * 19 6 5 21 21 H 1.08999 * 109.46962 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46962 * 300.02039 * 1 2 3 23 23 H 1.08991 * 109.47217 * 60.02675 * 1 2 3 24 24 H 1.09002 * 109.46219 * 290.04598 * 4 2 1 25 25 H 1.09004 * 109.46065 * 50.01937 * 4 2 1 26 26 H 1.09005 * 109.67387 * 169.79242 * 5 4 2 27 27 H 1.09006 * 109.67173 * 290.32328 * 5 4 2 28 28 H 1.09008 * 109.46968 * 29.97855 * 9 8 7 29 29 H 1.09000 * 109.47572 * 149.97731 * 9 8 7 30 30 H 0.96997 * 120.00181 * 180.02562 * 13 12 10 31 31 H 1.08003 * 126.67630 * 179.97438 * 18 8 7 32 32 H 1.08998 * 109.67926 * 223.88249 * 20 19 6 33 33 H 1.09003 * 109.70925 * 103.35070 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2498 5 6 3.5534 -0.5100 -1.3823 6 6 4.1999 -0.8432 -0.0602 7 8 5.4924 -1.0919 0.1815 8 6 5.6615 -1.3471 1.4913 9 6 6.9702 -1.6739 2.1632 10 6 7.1847 -3.1654 2.1467 11 1 6.4470 -3.8122 1.6953 12 6 8.3229 -3.7045 2.7079 13 7 9.2217 -2.9170 3.2573 14 14 8.5885 -5.5534 2.6881 15 1 9.3169 -5.9358 1.4518 16 1 9.3861 -5.9517 3.8758 17 1 7.2735 -6.2427 2.7212 18 6 4.4629 -1.2610 2.1016 19 6 3.5255 -0.9374 1.1043 20 6 2.0417 -0.7235 1.2522 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5142 0.8898 23 1 -0.3633 0.5134 -0.8901 24 1 1.8296 -1.7884 -1.1648 25 1 1.5391 -0.3220 -2.1310 26 1 3.9492 -1.1643 -2.1592 27 1 3.7570 0.5297 -1.6387 28 1 7.7848 -1.1838 1.6297 29 1 6.9473 -1.3215 3.1944 30 1 10.0226 -3.2962 3.6518 31 1 4.2614 -1.4120 3.1518 32 1 1.8448 -0.1144 2.1343 33 1 1.5396 -1.6859 1.3511 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261259946.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:33 Heat of formation + Delta-G solvation = -37.928446 kcal Electronic energy + Delta-G solvation = -14581.312453 eV Core-core repulsion = 12185.458892 eV Total energy + Delta-G solvation = -2395.853561 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.54362 -38.58720 -35.62678 -33.94282 -32.75893 -31.80420 -28.70185 -27.10843 -25.36450 -23.45962 -22.10235 -21.72312 -19.52830 -18.70017 -17.54489 -16.97922 -16.53560 -15.76449 -15.13138 -14.72705 -14.59464 -14.33396 -14.03396 -13.80847 -13.55574 -13.44486 -13.21641 -12.78777 -12.72744 -12.56456 -12.33232 -11.93866 -11.70565 -11.65190 -11.44670 -11.21925 -10.68860 -10.35686 -8.94624 -8.27032 -6.44182 0.92305 1.37562 1.39298 1.50996 1.76325 2.13007 2.37788 3.02388 3.74747 3.83876 3.91700 4.04528 4.28302 4.36328 4.54293 4.56828 4.61162 4.80266 4.87597 4.90626 4.97571 5.03292 5.06689 5.11317 5.16663 5.27969 5.33629 5.43894 5.52219 5.56673 5.61207 5.86015 6.01628 6.46192 6.63752 7.24668 8.80669 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.051905 B = 0.005967 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.317066 B = 4691.316801 C = 4709.187807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.071 0.929 4 C -0.103 4.103 5 C -0.032 4.032 6 C -0.059 4.059 7 O -0.196 6.196 8 C 0.007 3.993 9 C 0.096 3.904 10 C -0.541 4.541 11 H 0.051 0.949 12 C 0.010 3.990 13 N -0.926 5.926 14 Si 0.973 3.027 15 H -0.270 1.270 16 H -0.272 1.272 17 H -0.267 1.267 18 C -0.236 4.236 19 C -0.184 4.184 20 C -0.040 4.040 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.010 0.990 29 H 0.037 0.963 30 H 0.270 0.730 31 H 0.144 0.856 32 H 0.075 0.925 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.573 4.875 -7.787 18.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.090 0.910 4 C -0.141 4.141 5 C -0.069 4.069 6 C -0.108 4.108 7 O -0.094 6.094 8 C -0.043 4.043 9 C 0.059 3.941 10 C -0.579 4.579 11 H 0.069 0.931 12 C -0.189 4.189 13 N -0.565 5.565 14 Si 0.796 3.204 15 H -0.195 1.195 16 H -0.197 1.197 17 H -0.191 1.191 18 C -0.255 4.255 19 C -0.186 4.186 20 C -0.077 4.077 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.090 0.910 24 H 0.081 0.919 25 H 0.124 0.876 26 H 0.104 0.896 27 H 0.114 0.886 28 H 0.028 0.972 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.161 0.839 32 H 0.094 0.906 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.197 4.887 -7.911 18.676 hybrid contribution 0.886 -0.855 0.621 1.379 sum -15.311 4.032 -7.289 17.431 Atomic orbital electron populations 1.21776 0.92833 1.02399 1.02690 1.21223 0.97001 0.99268 0.93402 0.91034 1.21668 0.91793 1.01375 0.99230 1.20365 0.95263 1.02912 0.88314 1.23134 0.80642 1.07443 0.99567 1.83837 1.29044 1.68952 1.27531 1.23334 0.99215 1.01466 0.80298 1.17665 0.85968 0.96599 0.93834 1.21271 1.05942 0.91680 1.39011 0.93060 1.25928 0.94979 1.03897 0.94075 1.70054 1.10530 1.37388 1.38488 0.85329 0.78505 0.78276 0.78243 1.19530 1.19721 1.19143 1.21329 0.92021 1.11140 1.00986 1.20484 0.98340 1.07739 0.91992 1.20200 0.87181 1.00956 0.99376 0.92329 0.92211 0.90975 0.91852 0.87579 0.89643 0.88629 0.97193 0.94488 0.92071 0.83864 0.90609 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.17 71.98 0.66 -1.31 16 2 C -0.09 -1.79 2.70 -10.62 -0.03 -1.82 16 3 H 0.07 1.44 8.12 -2.39 -0.02 1.42 16 4 C -0.10 -1.98 5.20 30.75 0.16 -1.82 16 5 C -0.03 -0.80 6.30 30.02 0.19 -0.61 16 6 C -0.06 -2.21 7.22 24.98 0.18 -2.03 16 7 O -0.20 -9.35 10.64 -0.09 0.00 -9.35 16 8 C 0.01 0.34 6.52 24.89 0.16 0.50 16 9 C 0.10 5.50 5.51 29.10 0.16 5.66 16 10 C -0.54 -32.47 9.09 25.60 0.23 -32.23 16 11 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 12 C 0.01 0.60 5.46 84.65 0.46 1.06 16 13 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 14 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 18 C -0.24 -10.48 10.79 22.06 0.24 -10.24 16 19 C -0.18 -6.84 5.95 -20.06 -0.12 -6.96 16 20 C -0.04 -1.06 5.59 29.97 0.17 -0.89 16 21 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 22 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 23 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.06 1.29 8.11 -2.39 -0.02 1.27 16 25 H 0.11 1.36 8.11 -2.39 -0.02 1.34 16 26 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 27 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 28 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 31 H 0.14 6.02 8.06 -2.91 -0.02 6.00 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 1.89 8.12 -2.39 -0.02 1.87 16 Total: -1.00 -68.24 276.00 5.85 -62.40 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 1.07 Total: 6.48 kcal Atomic # 6 Polarization: -53.16 SS G_CDS: 2.46 Total: -50.69 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.28 Total: -55.79 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.00 Total: -9.35 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -68.24 5.85 -62.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259946.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.469 kcal (2) G-P(sol) polarization free energy of solvation -68.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds