Wall clock time and date at job start Mon Mar 30 2020 20:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99932 * 2 1 4 4 H 1.48493 * 109.47153 * 240.00003 * 3 2 1 5 5 H 1.48506 * 109.47083 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47306 * 119.99819 * 3 2 1 7 7 C 1.37870 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00098 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99927 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47353 * 60.00063 * 9 7 2 11 11 N 1.46902 * 109.47265 * 299.99872 * 9 7 2 12 12 C 1.50696 * 109.47160 * 179.97438 * 9 7 2 13 13 C 1.35087 * 126.36856 * 99.97827 * 12 9 7 14 14 N 1.36546 * 108.28134 * 180.02562 * 13 12 9 15 15 H 0.96997 * 125.67342 * 179.97438 * 14 13 12 16 16 C 1.35824 * 108.65309 * 359.94100 * 14 13 12 17 17 C 1.35260 * 108.19134 * 0.11189 * 16 14 13 18 18 C 1.50751 * 124.35299 * 179.79738 * 17 16 14 19 19 C 1.53382 * 108.38108 * 343.61033 * 18 17 16 20 20 C 1.53116 * 109.45186 * 49.74116 * 19 18 17 21 21 C 1.50907 * 127.80603 * 180.37827 * 16 14 13 22 22 H 0.97005 * 119.99983 * 0.02562 * 1 2 3 23 23 H 1.00890 * 110.99870 * 300.00187 * 11 9 7 24 24 H 1.00901 * 110.99759 * 63.95584 * 11 9 7 25 25 H 1.07997 * 125.86016 * 0.04388 * 13 12 9 26 26 H 1.08999 * 109.67888 * 103.32734 * 18 17 16 27 27 H 1.08995 * 109.68414 * 223.84502 * 18 17 16 28 28 H 1.08999 * 109.47780 * 169.74128 * 19 18 17 29 29 H 1.09004 * 109.47064 * 289.75689 * 19 18 17 30 30 H 1.09005 * 109.45901 * 49.87584 * 20 19 18 31 31 H 1.09006 * 109.46230 * 169.83791 * 20 19 18 32 32 H 1.08998 * 109.67960 * 283.06032 * 21 16 14 33 33 H 1.09003 * 109.67564 * 43.60795 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 0.4061 -2.5767 1.1997 12 6 2.2303 -3.6445 0.0005 13 6 2.6076 -4.3758 1.0718 14 7 3.5074 -5.3143 0.6544 15 1 3.9406 -5.9732 1.2192 16 6 3.6942 -5.1722 -0.6834 17 6 2.9202 -4.1489 -1.1115 18 6 2.8510 -3.6748 -2.5409 19 6 4.0602 -4.2396 -3.2968 20 6 4.1665 -5.7448 -3.0369 21 6 4.5894 -5.9874 -1.5841 22 1 -0.4850 0.8401 -0.0004 23 1 0.9637 -2.5251 2.0389 24 1 -0.3013 -1.8572 1.1907 25 1 2.2575 -4.2415 2.0846 26 1 1.9303 -4.0322 -3.0020 27 1 2.8763 -2.5855 -2.5680 28 1 3.9357 -4.0631 -4.3652 29 1 4.9683 -3.7460 -2.9503 30 1 3.1983 -6.2131 -3.2140 31 1 4.9076 -6.1779 -3.7088 32 1 5.6258 -5.6782 -1.4489 33 1 4.4871 -7.0455 -1.3431 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261265423.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:38 Heat of formation + Delta-G solvation = 21.717506 kcal Electronic energy + Delta-G solvation = -15082.215706 eV Core-core repulsion = 12721.241338 eV Total energy + Delta-G solvation = -2360.974367 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.63706 -35.89025 -34.58634 -31.67627 -30.43849 -28.58304 -27.26897 -25.74985 -22.87742 -22.14696 -21.20904 -18.10562 -17.71946 -16.82262 -16.27874 -14.68334 -14.50039 -13.72623 -13.55200 -13.36252 -13.20942 -12.79851 -12.49539 -12.37623 -11.75418 -11.34121 -11.18012 -11.00145 -10.78545 -10.63258 -10.44985 -10.20271 -9.96272 -9.89102 -9.41601 -8.51990 -7.50166 -7.05181 -6.91686 -5.91263 -4.07008 3.03310 3.31812 3.36465 3.39694 3.99192 4.01241 4.47730 5.14387 5.21395 5.26303 5.28718 5.72703 5.81154 5.87299 5.96815 6.13100 6.16193 6.21122 6.36769 6.48634 6.56405 6.72297 6.81688 7.02242 7.19197 7.36234 7.71635 7.90703 8.04616 8.13647 8.37078 8.44175 8.89729 9.14330 9.29861 9.63827 11.04672 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.032323 B = 0.009149 C = 0.008010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.035117 B = 3059.871633 C = 3494.708663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.529 4.529 8 H 0.052 0.948 9 C 0.271 3.729 10 H 0.041 0.959 11 N -0.851 5.851 12 C -0.096 4.096 13 C -0.033 4.033 14 N -0.564 5.564 15 H 0.400 0.600 16 C -0.017 4.017 17 C -0.151 4.151 18 C -0.045 4.045 19 C -0.117 4.117 20 C -0.109 4.109 21 C -0.039 4.039 22 H 0.263 0.737 23 H 0.307 0.693 24 H 0.352 0.648 25 H 0.155 0.845 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.418 -9.696 -2.400 12.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.569 4.569 8 H 0.071 0.929 9 C 0.160 3.840 10 H 0.059 0.941 11 N -0.380 5.380 12 C -0.103 4.103 13 C -0.161 4.161 14 N -0.160 5.160 15 H 0.235 0.765 16 C -0.129 4.129 17 C -0.159 4.159 18 C -0.083 4.083 19 C -0.154 4.154 20 C -0.147 4.147 21 C -0.077 4.077 22 H 0.073 0.927 23 H 0.116 0.884 24 H 0.168 0.832 25 H 0.172 0.828 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.087 -10.388 -2.590 12.839 hybrid contribution 1.080 1.718 0.634 2.126 sum 8.167 -8.671 -1.956 12.071 Atomic orbital electron populations 1.69745 1.05743 1.26876 1.51491 1.25023 0.94878 0.99033 0.94986 0.86662 0.79587 0.83154 0.78586 1.20282 1.21371 1.20489 1.21859 0.93551 0.91288 1.50187 0.92945 1.17338 0.88256 0.87553 0.90818 0.94128 1.59482 1.18507 1.55824 1.04161 1.19807 1.00597 0.98627 0.91238 1.21508 0.99161 0.95701 0.99702 1.41476 1.37406 1.29692 1.07393 0.76524 1.19927 1.06096 1.02921 0.83957 1.19091 1.02401 0.98958 0.95478 1.19958 0.96456 1.00932 0.90917 1.21590 0.99407 0.95000 0.99422 1.21466 1.01250 0.97288 0.94741 1.20005 0.96975 0.97312 0.93442 0.92709 0.88434 0.83224 0.82769 0.92266 0.90440 0.92373 0.92214 0.91799 0.92210 0.91786 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.49 11.54 55.43 0.64 -24.85 16 2 C 0.06 1.72 5.38 -17.82 -0.10 1.62 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.53 -14.73 8.71 -34.44 -0.30 -15.03 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.27 7.08 3.09 -70.02 -0.22 6.87 16 10 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 11 N -0.85 -21.10 8.89 -6.65 -0.06 -21.16 16 12 C -0.10 -2.23 5.22 -104.99 -0.55 -2.77 16 13 C -0.03 -0.66 11.16 -16.57 -0.18 -0.84 16 14 N -0.56 -9.50 6.07 -8.98 -0.05 -9.56 16 15 H 0.40 5.15 8.96 -40.82 -0.37 4.78 16 16 C -0.02 -0.30 7.05 -81.78 -0.58 -0.88 16 17 C -0.15 -3.15 5.93 -104.90 -0.62 -3.78 16 18 C -0.04 -0.85 6.16 -27.66 -0.17 -1.02 16 19 C -0.12 -1.73 5.91 -26.47 -0.16 -1.89 16 20 C -0.11 -1.42 5.89 -26.55 -0.16 -1.58 16 21 C -0.04 -0.53 6.30 -27.66 -0.17 -0.71 16 22 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 23 H 0.31 7.21 8.02 -39.30 -0.32 6.89 16 24 H 0.35 9.31 7.08 -39.29 -0.28 9.03 16 25 H 0.15 2.88 7.37 -52.49 -0.39 2.49 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 30 H 0.06 0.85 8.11 -51.93 -0.42 0.43 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 268.87 15.07 4.05 4.05 Total: -1.00 -29.85 268.87 -8.33 -38.19 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -4.69 Total: 16.77 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -3.20 Total: -20.00 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.53 Total: -55.57 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.85 -8.33 -38.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261265423.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.903 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds