Wall clock time and date at job start Mon Mar 30 2020 20:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 11 11 N 1.46896 * 109.46997 * 300.00267 * 9 7 2 12 12 C 1.50701 * 109.47064 * 180.02562 * 9 7 2 13 13 C 1.34983 * 125.88748 * 85.02351 * 12 9 7 14 14 C 1.41044 * 107.46059 * 179.91280 * 13 12 9 15 15 C 1.34312 * 107.33365 * 359.97438 * 14 13 12 16 16 N 1.35990 * 125.89362 * 264.71682 * 12 9 7 17 17 C 1.46754 * 127.14911 * 0.77210 * 16 12 9 18 18 C 1.53215 * 108.83823 * 162.22909 * 17 16 12 19 19 C 1.53121 * 109.61646 * 50.70305 * 18 17 16 20 20 C 1.50970 * 127.44961 * 180.09363 * 15 14 13 21 21 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 22 22 H 1.00907 * 110.99811 * 176.04301 * 11 9 7 23 23 H 1.00900 * 111.00550 * 300.00040 * 11 9 7 24 24 H 1.07998 * 126.27039 * 359.93764 * 13 12 9 25 25 H 1.07999 * 126.32746 * 179.97438 * 14 13 12 26 26 H 1.08997 * 109.72309 * 42.32109 * 17 16 12 27 27 H 1.09001 * 109.51118 * 282.00223 * 17 16 12 28 28 H 1.09002 * 109.44725 * 290.65255 * 18 17 16 29 29 H 1.09008 * 109.44506 * 170.74935 * 18 17 16 30 30 H 1.09001 * 109.51827 * 170.10450 * 19 18 17 31 31 H 1.08995 * 109.55777 * 49.96930 * 19 18 17 32 32 H 1.09002 * 109.72787 * 283.89374 * 20 15 14 33 33 H 1.09001 * 109.72448 * 44.56443 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5568 -0.8903 11 7 0.4070 -2.5772 1.1992 12 6 2.2304 -3.6446 -0.0005 13 6 2.8167 -4.1844 1.0889 14 6 3.6554 -5.2279 0.6450 15 6 3.5488 -5.2852 -0.6927 16 7 2.6714 -4.3165 -1.0975 17 6 2.3070 -4.0650 -2.4967 18 6 3.3441 -4.7326 -3.4057 19 6 3.5329 -6.1926 -2.9845 20 6 4.2508 -6.2386 -1.6294 21 1 -0.4850 0.8400 0.0004 22 1 -0.1570 -3.4139 1.1906 23 1 0.9652 -2.5260 2.0381 24 1 2.6702 -3.8743 2.1130 25 1 4.2695 -5.8632 1.2659 26 1 2.2924 -2.9917 -2.6858 27 1 1.3213 -4.4849 -2.6973 28 1 4.2940 -4.2048 -3.3212 29 1 2.9990 -4.6946 -4.4390 30 1 4.1321 -6.7127 -3.7319 31 1 2.5598 -6.6759 -2.8973 32 1 5.2900 -5.9342 -1.7535 33 1 4.2088 -7.2498 -1.2246 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261270060.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:42 Heat of formation + Delta-G solvation = 36.345839 kcal Electronic energy + Delta-G solvation = -15132.460647 eV Core-core repulsion = 12772.120612 eV Total energy + Delta-G solvation = -2360.340035 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.82700 -35.88240 -34.11848 -32.09107 -31.31222 -28.46963 -26.96971 -25.67281 -23.65824 -21.92754 -20.91763 -19.16243 -17.84939 -16.38317 -15.77860 -15.02626 -14.45070 -14.07467 -13.94747 -13.81548 -13.33815 -13.01463 -12.81460 -12.33438 -11.91041 -11.49908 -11.15714 -10.97295 -10.89101 -10.76160 -10.70117 -10.61531 -10.48419 -9.79288 -9.17227 -8.42459 -7.81034 -7.24464 -6.86220 -5.86623 -4.01436 3.04939 3.33518 3.41032 3.45427 3.68094 3.84944 4.50819 4.80443 4.87908 4.94399 5.25068 5.37969 5.55002 5.64923 5.79795 5.84691 5.94991 5.97720 6.07544 6.19867 6.29051 6.30409 6.38573 6.45705 7.00508 7.11504 7.37896 7.88217 7.93397 8.07626 8.19751 8.29458 8.68250 9.05268 9.16632 9.67173 11.17193 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.034602 B = 0.008770 C = 0.008069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.006594 B = 3191.848038 C = 3469.137543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.083 3.917 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.053 0.947 9 C 0.282 3.718 10 H 0.038 0.962 11 N -0.801 5.801 12 C 0.047 3.953 13 C -0.231 4.231 14 C -0.196 4.196 15 C -0.020 4.020 16 N -0.439 5.439 17 C 0.107 3.893 18 C -0.131 4.131 19 C -0.122 4.122 20 C -0.043 4.043 21 H 0.256 0.744 22 H 0.298 0.702 23 H 0.322 0.678 24 H 0.123 0.877 25 H 0.121 0.879 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.461 -10.429 -5.251 12.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.124 4.124 3 Si 0.712 3.288 4 H -0.209 1.209 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.071 0.929 9 C 0.171 3.829 10 H 0.056 0.944 11 N -0.326 5.326 12 C -0.068 4.068 13 C -0.255 4.255 14 C -0.221 4.221 15 C -0.130 4.130 16 N -0.116 5.116 17 C -0.015 4.015 18 C -0.169 4.169 19 C -0.160 4.160 20 C -0.081 4.081 21 H 0.066 0.934 22 H 0.108 0.892 23 H 0.134 0.866 24 H 0.141 0.859 25 H 0.139 0.861 26 H 0.112 0.888 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.814 -9.551 -5.873 12.202 hybrid contribution 1.090 0.094 0.331 1.143 sum 5.905 -9.456 -5.542 12.450 Atomic orbital electron populations 1.70105 1.05645 1.25706 1.46869 1.24954 0.94644 0.98524 0.94252 0.86744 0.80121 0.83999 0.77917 1.20877 1.21193 1.19954 1.20827 0.92275 0.89331 1.54157 0.92865 1.17716 0.86610 0.87549 0.90992 0.94418 1.59311 1.27332 1.41602 1.04309 1.22731 1.01864 0.97442 0.84759 1.20458 1.05277 1.02076 0.97659 1.20303 1.05706 1.03153 0.92925 1.20068 1.01320 0.97521 0.94094 1.44078 1.35129 1.26621 1.05816 1.21803 0.98017 1.02452 0.79213 1.21831 0.99801 0.96216 0.99039 1.21605 1.01052 0.96310 0.96983 1.20162 0.98002 0.97183 0.92779 0.93442 0.89160 0.86628 0.85889 0.86142 0.88787 0.91124 0.91061 0.90298 0.91452 0.91740 0.91245 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.70 12.77 55.43 0.71 -24.00 16 2 C 0.08 2.32 5.39 -17.82 -0.10 2.23 16 3 Si 0.88 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.53 -14.70 8.71 -34.44 -0.30 -15.00 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.28 7.16 2.90 -70.02 -0.20 6.95 16 10 H 0.04 1.03 7.81 -51.93 -0.41 0.63 16 11 N -0.80 -19.39 8.39 -6.65 -0.06 -19.45 16 12 C 0.05 1.07 5.89 -81.90 -0.48 0.59 16 13 C -0.23 -4.99 10.17 -39.68 -0.40 -5.40 16 14 C -0.20 -3.78 10.80 -39.90 -0.43 -4.21 16 15 C -0.02 -0.37 6.55 -81.62 -0.53 -0.91 16 16 N -0.44 -8.76 3.15 -107.64 -0.34 -9.10 16 17 C 0.11 1.79 6.44 -3.79 -0.02 1.77 16 18 C -0.13 -1.69 5.92 -26.56 -0.16 -1.85 16 19 C -0.12 -1.44 5.96 -26.45 -0.16 -1.60 16 20 C -0.04 -0.59 6.28 -27.53 -0.17 -0.76 16 21 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 22 H 0.30 6.55 9.06 -39.29 -0.36 6.19 16 23 H 0.32 7.54 8.02 -39.29 -0.32 7.23 16 24 H 0.12 2.57 7.46 -52.49 -0.39 2.18 16 25 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 26 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 29 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 271.72 15.07 4.09 4.09 Total: -1.00 -30.77 271.72 -8.39 -39.16 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -4.81 Total: 10.95 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -2.96 Total: -18.18 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.31 Total: -52.54 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.77 -8.39 -39.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270060.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.508 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds