Wall clock time and date at job start Mon Mar 30 2020 20:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 11 11 N 1.46896 * 109.46997 * 300.00267 * 9 7 2 12 12 C 1.50701 * 109.47064 * 180.02562 * 9 7 2 13 13 C 1.34983 * 125.88748 * 85.02351 * 12 9 7 14 14 C 1.41044 * 107.46059 * 179.91280 * 13 12 9 15 15 C 1.34312 * 107.33365 * 359.97438 * 14 13 12 16 16 N 1.35990 * 125.89362 * 264.71682 * 12 9 7 17 17 C 1.46754 * 127.14911 * 0.77210 * 16 12 9 18 18 C 1.53215 * 108.83823 * 162.22909 * 17 16 12 19 19 C 1.53121 * 109.61646 * 50.70305 * 18 17 16 20 20 C 1.50970 * 127.44961 * 180.09363 * 15 14 13 21 21 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 22 22 H 1.00907 * 110.99811 * 176.04301 * 11 9 7 23 23 H 1.00900 * 111.00550 * 300.00040 * 11 9 7 24 24 H 1.07998 * 126.27039 * 359.93764 * 13 12 9 25 25 H 1.07999 * 126.32746 * 179.97438 * 14 13 12 26 26 H 1.08997 * 109.72309 * 42.32109 * 17 16 12 27 27 H 1.09001 * 109.51118 * 282.00223 * 17 16 12 28 28 H 1.09002 * 109.44725 * 290.65255 * 18 17 16 29 29 H 1.09008 * 109.44506 * 170.74935 * 18 17 16 30 30 H 1.09001 * 109.51827 * 170.10450 * 19 18 17 31 31 H 1.08995 * 109.55777 * 49.96930 * 19 18 17 32 32 H 1.09002 * 109.72787 * 283.89374 * 20 15 14 33 33 H 1.09001 * 109.72448 * 44.56443 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5568 -0.8903 11 7 0.4070 -2.5772 1.1992 12 6 2.2304 -3.6446 -0.0005 13 6 2.8167 -4.1844 1.0889 14 6 3.6554 -5.2279 0.6450 15 6 3.5488 -5.2852 -0.6927 16 7 2.6714 -4.3165 -1.0975 17 6 2.3070 -4.0650 -2.4967 18 6 3.3441 -4.7326 -3.4057 19 6 3.5329 -6.1926 -2.9845 20 6 4.2508 -6.2386 -1.6294 21 1 -0.4850 0.8400 0.0004 22 1 -0.1570 -3.4139 1.1906 23 1 0.9652 -2.5260 2.0381 24 1 2.6702 -3.8743 2.1130 25 1 4.2695 -5.8632 1.2659 26 1 2.2924 -2.9917 -2.6858 27 1 1.3213 -4.4849 -2.6973 28 1 4.2940 -4.2048 -3.3212 29 1 2.9990 -4.6946 -4.4390 30 1 4.1321 -6.7127 -3.7319 31 1 2.5598 -6.6759 -2.8973 32 1 5.2900 -5.9342 -1.7535 33 1 4.2088 -7.2498 -1.2246 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261270060.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:42 Heat of formation + Delta-G solvation = 16.478515 kcal Electronic energy + Delta-G solvation = -15133.322159 eV Core-core repulsion = 12772.120612 eV Total energy + Delta-G solvation = -2361.201547 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.32498 -37.24096 -35.93004 -33.63034 -33.19174 -29.86325 -28.68191 -27.50142 -25.09267 -23.63084 -22.18975 -20.75026 -19.23041 -18.49703 -17.39975 -16.48533 -16.36887 -15.89831 -15.07198 -15.02837 -14.74727 -14.42881 -14.40733 -14.14069 -13.66011 -13.06650 -12.84332 -12.67790 -12.57499 -12.35788 -11.95302 -11.87669 -11.68946 -11.60200 -11.27119 -10.59159 -9.36222 -9.12281 -8.53224 -8.00213 -6.23989 1.38782 1.40626 1.48888 1.55225 2.20142 2.25100 2.46764 3.21124 3.70558 3.82320 3.91395 4.05616 4.36720 4.40700 4.45256 4.54876 4.67778 4.75767 4.83979 4.89814 4.91406 5.04164 5.09206 5.18837 5.32440 5.51480 5.65828 5.74052 6.06689 6.33878 6.48970 6.66503 6.73409 7.02965 7.20436 7.48524 9.01178 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.034602 B = 0.008770 C = 0.008069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.006594 B = 3191.848038 C = 3469.137543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.037 3.963 3 Si 0.949 3.051 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.037 0.963 9 C 0.292 3.708 10 H 0.007 0.993 11 N -0.809 5.809 12 C 0.009 3.991 13 C -0.239 4.239 14 C -0.218 4.218 15 C -0.007 4.007 16 N -0.446 5.446 17 C 0.097 3.903 18 C -0.124 4.124 19 C -0.117 4.117 20 C -0.045 4.045 21 H 0.257 0.743 22 H 0.310 0.690 23 H 0.324 0.676 24 H 0.119 0.881 25 H 0.146 0.854 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.016 -11.721 -6.383 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.167 4.167 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.055 0.945 9 C 0.181 3.819 10 H 0.025 0.975 11 N -0.335 5.335 12 C -0.106 4.106 13 C -0.263 4.263 14 C -0.242 4.242 15 C -0.118 4.118 16 N -0.123 5.123 17 C -0.024 4.024 18 C -0.161 4.161 19 C -0.154 4.154 20 C -0.082 4.082 21 H 0.066 0.934 22 H 0.121 0.879 23 H 0.137 0.863 24 H 0.137 0.863 25 H 0.164 0.836 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.371 -10.849 -7.017 14.406 hybrid contribution 0.610 0.436 0.676 1.009 sum 6.981 -10.413 -6.342 14.049 Atomic orbital electron populations 1.70215 1.06920 1.26557 1.47678 1.25661 0.95470 1.01689 0.93839 0.85732 0.78656 0.79937 0.78222 1.19930 1.20571 1.20048 1.21006 0.91619 0.91043 1.54230 0.94507 1.17285 0.86620 0.88026 0.89968 0.97524 1.59155 1.27664 1.42522 1.04115 1.22252 1.03434 0.98398 0.86561 1.20638 1.05606 1.02758 0.97305 1.20633 1.06289 1.03310 0.93968 1.20931 0.99364 0.96649 0.94830 1.44312 1.35082 1.26574 1.06292 1.22027 1.00063 1.01552 0.78722 1.21856 0.98094 0.96652 0.99501 1.21623 1.01496 0.95445 0.96855 1.20397 0.98256 0.96914 0.92660 0.93350 0.87914 0.86342 0.86288 0.83625 0.91427 0.90611 0.91548 0.87326 0.87793 0.91891 0.89698 0.88480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.14 12.77 21.45 0.27 -51.86 16 2 C 0.04 2.13 5.39 84.65 0.46 2.58 16 3 Si 0.95 44.83 29.54 68.60 2.03 46.85 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 7 C -0.54 -31.10 8.71 25.60 0.22 -30.88 16 8 H 0.04 2.19 7.74 -2.91 -0.02 2.16 16 9 C 0.29 15.42 2.90 43.43 0.13 15.54 16 10 H 0.01 0.40 7.81 -2.39 -0.02 0.38 16 11 N -0.81 -40.53 8.39 -174.95 -1.47 -41.99 16 12 C 0.01 0.41 5.89 41.17 0.24 0.65 16 13 C -0.24 -10.45 10.17 22.21 0.23 -10.22 16 14 C -0.22 -8.14 10.80 22.06 0.24 -7.91 16 15 C -0.01 -0.24 6.55 40.97 0.27 0.03 16 16 N -0.45 -17.74 3.15 -494.46 -1.56 -19.30 16 17 C 0.10 3.26 6.44 86.40 0.56 3.81 16 18 C -0.12 -2.85 5.92 30.71 0.18 -2.67 16 19 C -0.12 -2.27 5.96 30.77 0.18 -2.09 16 20 C -0.04 -1.04 6.28 30.07 0.19 -0.85 16 21 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 22 H 0.31 14.08 9.06 -89.69 -0.81 13.27 16 23 H 0.32 15.75 8.02 -89.69 -0.72 15.03 16 24 H 0.12 5.11 7.46 -2.91 -0.02 5.09 16 25 H 0.15 4.57 8.06 -2.91 -0.02 4.54 16 26 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.07 1.61 8.11 -2.39 -0.02 1.59 16 29 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.28 8.12 -2.39 -0.02 1.26 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -67.41 271.72 1.74 -65.67 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: -0.42 Total: 32.62 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: 2.89 Total: -31.98 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -2.75 Total: -113.16 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -67.41 1.74 -65.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270060.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.146 kcal (2) G-P(sol) polarization free energy of solvation -67.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds