Wall clock time and date at job start Mon Mar 30 2020 20:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00183 * 2 1 4 4 H 1.48500 * 109.47231 * 269.99896 * 3 2 1 5 5 H 1.48506 * 109.47161 * 30.00129 * 3 2 1 6 6 H 1.48508 * 109.46998 * 149.99750 * 3 2 1 7 7 C 1.37879 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99830 * 359.97438 * 7 2 1 9 9 C 1.50692 * 119.99924 * 180.02562 * 7 2 1 10 10 C 1.50697 * 109.47027 * 179.97438 * 9 7 2 11 11 C 1.34994 * 125.98471 * 124.97047 * 10 9 7 12 12 N 1.36263 * 106.39347 * 180.10034 * 11 10 9 13 13 C 1.34258 * 107.77174 * 359.81900 * 12 11 10 14 14 N 1.30166 * 108.85049 * 0.23893 * 13 12 11 15 15 C 1.52069 * 124.42353 * 180.44758 * 13 12 11 16 16 C 1.53547 * 107.01575 * 65.16436 * 15 13 12 17 17 C 1.50987 * 111.01278 * 280.71757 * 16 15 13 18 18 C 1.50896 * 116.40810 * 72.31025 * 17 16 15 19 19 C 1.47664 * 127.30392 * 179.69344 * 12 11 10 20 20 H 0.97008 * 119.99909 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47248 * 59.99789 * 9 7 2 22 22 H 1.08997 * 109.47144 * 299.99341 * 9 7 2 23 23 H 1.08000 * 126.79792 * 0.13361 * 11 10 9 24 24 H 1.09002 * 109.94447 * 184.54315 * 15 13 12 25 25 H 1.09006 * 109.94262 * 305.78562 * 15 13 12 26 26 H 1.09001 * 109.16981 * 160.32728 * 16 15 13 27 27 H 1.08998 * 109.17387 * 41.11968 * 16 15 13 28 28 H 1.08998 * 108.06688 * 310.56026 * 17 16 15 29 29 H 1.08998 * 108.06312 * 194.05487 * 17 16 15 30 30 H 1.08997 * 109.13707 * 47.99884 * 18 17 16 31 31 H 1.09006 * 109.13499 * 167.18172 * 18 17 16 32 32 H 1.09001 * 109.90889 * 354.62412 * 19 12 11 33 33 H 1.08997 * 109.97949 * 233.50478 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 0.0000 10 6 4.0137 -2.6150 -0.0001 11 6 4.8687 -3.1539 -0.8950 12 7 5.0477 -4.4523 -0.5221 13 6 4.3100 -4.6679 0.5787 14 7 3.6881 -3.5678 0.8904 15 6 4.2392 -5.9938 1.3200 16 6 5.6378 -6.2630 1.8938 17 6 6.5649 -6.8012 0.8305 18 6 7.0271 -5.8183 -0.2169 19 6 5.8905 -5.4662 -1.1870 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6809 0.8905 22 1 3.8751 -0.6798 -0.8895 23 1 5.3215 -2.6547 -1.7389 24 1 3.5115 -5.9292 2.1289 25 1 3.9604 -6.7908 0.6306 26 1 5.5593 -6.9905 2.7017 27 1 6.0476 -5.3335 2.2890 28 1 6.0574 -7.6218 0.3235 29 1 7.4469 -7.2076 1.3254 30 1 7.3724 -4.9086 0.2743 31 1 7.8524 -6.2563 -0.7785 32 1 6.3030 -5.0587 -2.1100 33 1 5.3000 -6.3559 -1.4057 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261274168.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:51 Heat of formation + Delta-G solvation = 45.765123 kcal Electronic energy + Delta-G solvation = -14797.748031 eV Core-core repulsion = 12437.816447 eV Total energy + Delta-G solvation = -2359.931584 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.67157 -36.93273 -33.61218 -32.96792 -31.23776 -29.40532 -28.18721 -25.28974 -23.60383 -22.38690 -20.59797 -19.38508 -18.92119 -16.73541 -16.49431 -15.28314 -14.63137 -14.36324 -14.15835 -13.90215 -13.69326 -13.13367 -12.61495 -12.37884 -12.03483 -11.78077 -11.72662 -11.40064 -10.94273 -10.86910 -10.84836 -10.44410 -10.19971 -9.90650 -9.16838 -8.97585 -8.77667 -8.39104 -7.37913 -5.87369 -3.82580 2.72096 3.24935 3.40053 3.47342 3.51720 3.99913 4.46701 4.54442 4.57980 4.68984 4.75639 5.07493 5.18995 5.25320 5.37325 5.43871 5.50344 5.56422 5.68621 5.81292 5.88524 5.98580 6.05947 6.21341 6.30439 6.49298 6.91619 7.17535 7.37018 7.60284 7.86511 7.94605 8.74421 9.01901 9.23772 9.73746 11.26675 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.053818 B = 0.006670 C = 0.006339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.149571 B = 4196.671432 C = 4416.256846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.063 3.937 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.494 4.494 8 H 0.075 0.925 9 C 0.058 3.942 10 C 0.059 3.941 11 C -0.092 4.092 12 N -0.460 5.460 13 C 0.186 3.814 14 N -0.470 5.470 15 C -0.028 4.028 16 C -0.118 4.118 17 C -0.120 4.120 18 C -0.134 4.134 19 C 0.108 3.892 20 H 0.261 0.739 21 H 0.029 0.971 22 H 0.023 0.977 23 H 0.166 0.834 24 H 0.095 0.905 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.525 -13.787 -1.019 20.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.137 4.137 3 Si 0.704 3.296 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.533 4.533 8 H 0.093 0.907 9 C 0.020 3.980 10 C -0.070 4.070 11 C -0.221 4.221 12 N -0.146 5.146 13 C -0.076 4.076 14 N -0.189 5.189 15 C -0.067 4.067 16 C -0.156 4.156 17 C -0.158 4.158 18 C -0.172 4.172 19 C -0.015 4.015 20 H 0.071 0.929 21 H 0.047 0.953 22 H 0.041 0.959 23 H 0.183 0.817 24 H 0.114 0.886 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.936 -13.645 -0.437 20.235 hybrid contribution 0.897 0.854 -0.896 1.529 sum 15.833 -12.791 -1.332 20.398 Atomic orbital electron populations 1.69919 1.06195 1.26511 1.52063 1.25002 0.94752 0.98809 0.95149 0.86830 0.80479 0.83974 0.78332 1.20399 1.21415 1.19001 1.20987 0.88593 0.94560 1.49149 0.90722 1.18088 0.97372 0.85952 0.96603 1.21287 0.95989 0.97390 0.92327 1.22318 1.09385 0.84786 1.05657 1.45211 1.36641 1.09732 1.23026 1.23275 0.96477 0.97787 0.90031 1.70239 1.22506 0.98484 1.27716 1.20378 0.97877 0.89570 0.98849 1.21300 0.94583 1.01878 0.97852 1.20808 0.99678 0.98481 0.96801 1.21636 0.97469 1.00766 0.97318 1.22194 0.91848 0.91497 0.95946 0.92945 0.95277 0.95874 0.81713 0.88603 0.90664 0.90980 0.91460 0.92182 0.92039 0.91012 0.90422 0.89190 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.35 13.96 55.43 0.77 -28.58 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.48 27.47 -169.99 -4.67 17.81 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 6 H -0.27 -6.55 6.54 56.52 0.37 -6.18 16 7 C -0.49 -15.26 9.63 -34.44 -0.33 -15.59 16 8 H 0.07 2.56 7.98 -52.49 -0.42 2.14 16 9 C 0.06 1.53 4.61 -29.04 -0.13 1.39 16 10 C 0.06 1.42 6.31 -82.61 -0.52 0.90 16 11 C -0.09 -1.78 11.53 -16.74 -0.19 -1.97 16 12 N -0.46 -7.60 2.74 -112.56 -0.31 -7.91 16 13 C 0.19 3.46 6.93 -155.73 -1.08 2.38 16 14 N -0.47 -11.22 11.25 -6.74 -0.08 -11.30 16 15 C -0.03 -0.37 6.00 -26.92 -0.16 -0.53 16 16 C -0.12 -1.25 5.62 -27.46 -0.15 -1.41 16 17 C -0.12 -1.03 5.09 -28.80 -0.15 -1.18 16 18 C -0.13 -1.22 5.69 -27.51 -0.16 -1.38 16 19 C 0.11 1.17 6.49 -3.13 -0.02 1.15 16 20 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 21 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 22 H 0.02 0.57 7.53 -51.93 -0.39 0.18 16 23 H 0.17 2.69 8.06 -52.49 -0.42 2.27 16 24 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.07 0.86 7.89 -51.93 -0.41 0.45 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.85 7.91 -51.93 -0.41 0.44 16 28 H 0.06 0.45 7.69 -51.93 -0.40 0.05 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.82 8.12 -51.93 -0.42 0.40 16 33 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 LS Contribution 268.76 15.07 4.05 4.05 Total: -1.00 -35.92 268.76 -8.16 -44.08 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -4.93 Total: -3.74 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -3.00 Total: -14.41 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.39 Total: -47.79 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.67 Total: 17.81 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -35.92 -8.16 -44.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261274168.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.844 kcal (2) G-P(sol) polarization free energy of solvation -35.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds