Wall clock time and date at job start Mon Mar 30 2020 20:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00183 * 2 1 4 4 H 1.48500 * 109.47231 * 269.99896 * 3 2 1 5 5 H 1.48506 * 109.47161 * 30.00129 * 3 2 1 6 6 H 1.48508 * 109.46998 * 149.99750 * 3 2 1 7 7 C 1.37879 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99830 * 359.97438 * 7 2 1 9 9 C 1.50692 * 119.99924 * 180.02562 * 7 2 1 10 10 C 1.50697 * 109.47027 * 179.97438 * 9 7 2 11 11 C 1.34994 * 125.98471 * 124.97047 * 10 9 7 12 12 N 1.36263 * 106.39347 * 180.10034 * 11 10 9 13 13 C 1.34258 * 107.77174 * 359.81900 * 12 11 10 14 14 N 1.30166 * 108.85049 * 0.23893 * 13 12 11 15 15 C 1.52069 * 124.42353 * 180.44758 * 13 12 11 16 16 C 1.53547 * 107.01575 * 65.16436 * 15 13 12 17 17 C 1.50987 * 111.01278 * 280.71757 * 16 15 13 18 18 C 1.50896 * 116.40810 * 72.31025 * 17 16 15 19 19 C 1.47664 * 127.30392 * 179.69344 * 12 11 10 20 20 H 0.97008 * 119.99909 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47248 * 59.99789 * 9 7 2 22 22 H 1.08997 * 109.47144 * 299.99341 * 9 7 2 23 23 H 1.08000 * 126.79792 * 0.13361 * 11 10 9 24 24 H 1.09002 * 109.94447 * 184.54315 * 15 13 12 25 25 H 1.09006 * 109.94262 * 305.78562 * 15 13 12 26 26 H 1.09001 * 109.16981 * 160.32728 * 16 15 13 27 27 H 1.08998 * 109.17387 * 41.11968 * 16 15 13 28 28 H 1.08998 * 108.06688 * 310.56026 * 17 16 15 29 29 H 1.08998 * 108.06312 * 194.05487 * 17 16 15 30 30 H 1.08997 * 109.13707 * 47.99884 * 18 17 16 31 31 H 1.09006 * 109.13499 * 167.18172 * 18 17 16 32 32 H 1.09001 * 109.90889 * 354.62412 * 19 12 11 33 33 H 1.08997 * 109.97949 * 233.50478 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 0.0000 10 6 4.0137 -2.6150 -0.0001 11 6 4.8687 -3.1539 -0.8950 12 7 5.0477 -4.4523 -0.5221 13 6 4.3100 -4.6679 0.5787 14 7 3.6881 -3.5678 0.8904 15 6 4.2392 -5.9938 1.3200 16 6 5.6378 -6.2630 1.8938 17 6 6.5649 -6.8012 0.8305 18 6 7.0271 -5.8183 -0.2169 19 6 5.8905 -5.4662 -1.1870 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6809 0.8905 22 1 3.8751 -0.6798 -0.8895 23 1 5.3215 -2.6547 -1.7389 24 1 3.5115 -5.9292 2.1289 25 1 3.9604 -6.7908 0.6306 26 1 5.5593 -6.9905 2.7017 27 1 6.0476 -5.3335 2.2890 28 1 6.0574 -7.6218 0.3235 29 1 7.4469 -7.2076 1.3254 30 1 7.3724 -4.9086 0.2743 31 1 7.8524 -6.2563 -0.7785 32 1 6.3030 -5.0587 -2.1100 33 1 5.3000 -6.3559 -1.4057 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261274168.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:51 Heat of formation + Delta-G solvation = 21.670320 kcal Electronic energy + Delta-G solvation = -14798.792860 eV Core-core repulsion = 12437.816447 eV Total energy + Delta-G solvation = -2360.976413 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.09098 -37.90106 -35.29471 -34.59490 -32.92605 -30.91612 -29.62212 -26.69876 -24.64039 -24.32450 -21.38862 -21.03935 -20.24758 -18.82952 -17.92893 -16.37207 -16.29921 -15.63445 -15.36403 -14.98260 -14.96867 -14.82904 -14.24713 -13.72505 -13.59114 -13.31094 -13.03517 -12.55780 -12.41190 -12.22605 -11.90706 -11.70136 -11.62005 -11.54151 -11.48839 -10.76603 -10.56484 -10.26860 -8.94242 -8.24679 -6.27669 1.29324 1.36154 1.40768 1.53256 2.05064 2.37017 2.39721 3.09028 3.50506 3.76854 3.80725 3.86235 4.13621 4.24290 4.40462 4.45452 4.49697 4.61506 4.73754 4.85725 4.91041 5.04886 5.08144 5.14586 5.22210 5.23821 5.37521 5.44384 5.54941 5.64457 5.98749 6.38899 6.53694 6.77251 7.33447 7.48807 8.93488 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.053818 B = 0.006670 C = 0.006339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.149571 B = 4196.671432 C = 4416.256846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.002 4.002 3 Si 0.960 3.040 4 H -0.256 1.256 5 H -0.282 1.282 6 H -0.250 1.250 7 C -0.509 4.509 8 H 0.016 0.984 9 C 0.067 3.933 10 C -0.003 4.003 11 C -0.070 4.070 12 N -0.452 5.452 13 C 0.188 3.812 14 N -0.539 5.539 15 C -0.028 4.028 16 C -0.111 4.111 17 C -0.122 4.122 18 C -0.129 4.129 19 C 0.097 3.903 20 H 0.266 0.734 21 H 0.018 0.982 22 H 0.042 0.958 23 H 0.198 0.802 24 H 0.082 0.918 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.643 -14.873 -2.201 23.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.197 4.197 3 Si 0.782 3.218 4 H -0.181 1.181 5 H -0.208 1.208 6 H -0.174 1.174 7 C -0.547 4.547 8 H 0.034 0.966 9 C 0.029 3.971 10 C -0.132 4.132 11 C -0.203 4.203 12 N -0.135 5.135 13 C -0.076 4.076 14 N -0.259 5.259 15 C -0.067 4.067 16 C -0.149 4.149 17 C -0.159 4.159 18 C -0.166 4.166 19 C -0.023 4.023 20 H 0.075 0.925 21 H 0.036 0.964 22 H 0.061 0.939 23 H 0.215 0.785 24 H 0.101 0.899 25 H 0.120 0.880 26 H 0.114 0.886 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 18.087 -14.776 -1.635 23.412 hybrid contribution -0.114 1.019 -0.523 1.151 sum 17.973 -13.757 -2.158 22.736 Atomic orbital electron populations 1.70096 1.08435 1.28096 1.53201 1.26096 0.95776 1.03650 0.94197 0.85523 0.79172 0.77469 0.79615 1.18096 1.20777 1.17370 1.21163 0.91287 0.92612 1.49634 0.96576 1.17867 0.94010 0.88585 0.96667 1.21142 0.99644 0.97024 0.95358 1.22607 1.07153 0.85829 1.04682 1.45531 1.36067 1.09715 1.22212 1.24053 0.95077 0.98038 0.90409 1.70077 1.25423 1.00569 1.29822 1.20637 0.99713 0.87701 0.98676 1.21277 0.92963 1.01362 0.99300 1.20830 1.00105 0.98681 0.96300 1.21643 0.97611 1.00111 0.97264 1.22753 0.91900 0.90729 0.96927 0.92514 0.96387 0.93934 0.78514 0.89920 0.87956 0.88578 0.94212 0.90132 0.90022 0.93369 0.86909 0.86901 0.87763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -64.39 13.96 21.45 0.30 -64.09 16 2 C 0.00 -0.12 5.47 84.65 0.46 0.34 16 3 Si 0.96 47.03 27.47 68.60 1.88 48.92 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.25 -11.54 6.54 99.48 0.65 -10.89 16 7 C -0.51 -33.08 9.63 25.60 0.25 -32.83 16 8 H 0.02 1.18 7.98 -2.91 -0.02 1.16 16 9 C 0.07 3.62 4.61 29.10 0.13 3.75 16 10 C 0.00 -0.16 6.31 41.42 0.26 0.10 16 11 C -0.07 -2.67 11.53 83.26 0.96 -1.71 16 12 N -0.45 -14.19 2.74 -510.03 -1.40 -15.59 16 13 C 0.19 6.99 6.93 138.91 0.96 7.95 16 14 N -0.54 -26.97 11.25 -175.24 -1.97 -28.94 16 15 C -0.03 -0.73 6.00 30.47 0.18 -0.55 16 16 C -0.11 -2.12 5.62 30.12 0.17 -1.95 16 17 C -0.12 -1.58 5.09 29.25 0.15 -1.43 16 18 C -0.13 -1.82 5.69 30.09 0.17 -1.65 16 19 C 0.10 1.72 6.49 86.33 0.56 2.28 16 20 H 0.27 16.50 8.31 -92.70 -0.77 15.73 16 21 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 22 H 0.04 2.08 7.53 -2.39 -0.02 2.07 16 23 H 0.20 5.92 8.06 -2.91 -0.02 5.90 16 24 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.10 2.06 7.89 -2.38 -0.02 2.05 16 26 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.04 0.98 7.91 -2.39 -0.02 0.96 16 28 H 0.08 0.78 7.69 -2.39 -0.02 0.76 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.94 8.08 -2.39 -0.02 0.92 16 31 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.11 1.53 8.12 -2.39 -0.02 1.51 16 33 H 0.10 1.50 7.87 -2.39 -0.02 1.48 16 Total: -1.00 -85.23 268.76 4.10 -81.14 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: 1.02 Total: 4.24 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 4.26 Total: -25.68 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -3.07 Total: -108.62 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.88 Total: 48.92 kcal Total: -85.23 4.10 -81.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261274168.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.809 kcal (2) G-P(sol) polarization free energy of solvation -85.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds