Wall clock time and date at job start Mon Mar 30 2020 20:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47069 * 304.99600 * 4 3 2 6 6 C 1.50703 * 109.46801 * 184.99876 * 4 3 2 7 7 H 1.08000 * 120.00226 * 239.99505 * 6 4 3 8 8 C 1.37876 * 119.99741 * 60.00200 * 6 4 3 9 9 N 1.31511 * 120.00557 * 359.97438 * 8 6 4 10 10 Si 1.86802 * 119.99840 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47337 * 59.99624 * 10 8 6 12 12 H 1.48502 * 109.47220 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47168 * 299.99658 * 10 8 6 14 14 C 1.50697 * 109.47204 * 65.00067 * 4 3 2 15 15 C 1.38285 * 119.97247 * 59.99882 * 14 4 3 16 16 C 1.38248 * 120.10774 * 179.97438 * 15 14 4 17 17 C 1.38166 * 120.05964 * 359.95389 * 16 15 14 18 18 C 1.38712 * 119.94034 * 0.02562 * 17 16 15 19 19 O 1.35898 * 120.05489 * 180.02562 * 18 17 16 20 20 C 1.38119 * 119.96759 * 239.71808 * 14 4 3 21 21 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 22 22 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 23 23 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 25 25 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 26 26 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 27 27 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 28 28 H 0.96999 * 120.00539 * 180.02562 * 9 8 6 29 29 H 1.07995 * 119.94644 * 359.97438 * 15 14 4 30 30 H 1.08003 * 119.97081 * 179.97438 * 16 15 14 31 31 H 1.08000 * 120.02876 * 180.02562 * 17 16 15 32 32 H 0.96701 * 114.00003 * 89.99881 * 19 18 17 33 33 H 1.08005 * 120.03407 * 0.02562 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9336 0.8528 0.8410 6 6 4.0724 2.8577 0.1232 7 1 4.6931 3.2803 -0.6531 8 6 3.7398 3.6132 1.2276 9 7 2.9837 3.0988 2.1727 10 14 4.3632 5.3674 1.3814 11 1 3.8683 6.1709 0.2348 12 1 3.8681 5.9591 2.6503 13 1 5.8482 5.3668 1.3812 14 6 4.0718 0.8421 -1.2886 15 6 3.7369 1.4228 -2.4981 16 6 4.1961 0.8748 -3.6813 17 6 4.9918 -0.2545 -3.6581 18 6 5.3295 -0.8386 -2.4461 19 8 6.1125 -1.9491 -2.4205 20 6 4.8705 -0.2844 -1.2597 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5139 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 2.7494 3.6304 2.9495 29 1 3.1156 2.3060 -2.5184 30 1 3.9328 1.3300 -4.6247 31 1 5.3506 -0.6819 -4.5827 32 1 7.0596 -1.7614 -2.3684 33 1 5.1352 -0.7352 -0.3146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261277878.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:57 Heat of formation + Delta-G solvation = -44.596607 kcal Electronic energy + Delta-G solvation = -14823.332697 eV Core-core repulsion = 12427.189983 eV Total energy + Delta-G solvation = -2396.142714 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.21864 -36.77130 -34.80230 -32.47347 -31.03078 -29.31919 -27.60937 -25.12915 -22.69338 -21.96802 -20.81441 -19.45295 -17.37884 -16.18740 -15.82648 -15.01292 -14.75184 -14.42229 -14.12420 -13.23166 -12.93521 -12.76651 -12.46774 -11.75652 -11.48520 -11.29266 -11.16294 -11.00824 -10.76901 -10.71350 -10.35591 -10.23354 -9.93222 -9.62378 -9.27210 -9.00870 -8.37064 -8.13848 -7.77539 -6.03569 -4.10935 1.89369 2.05175 3.29183 3.34134 3.36875 4.26314 4.43942 4.72112 5.25564 5.48179 5.53728 5.84913 5.86400 5.96303 6.04616 6.05897 6.24825 6.39697 6.57316 6.59310 6.67211 6.79688 6.91994 6.99595 7.06255 7.13087 7.28799 7.42203 7.50288 7.72373 7.95971 8.05992 8.10154 8.37037 8.91258 9.53380 11.01196 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.022819 B = 0.009810 C = 0.007947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.778783 B = 2853.636929 C = 3522.293465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C -0.106 4.106 4 C 0.076 3.924 5 H 0.035 0.965 6 C -0.509 4.509 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.887 5.887 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C -0.011 4.011 15 C -0.119 4.119 16 C -0.112 4.112 17 C -0.175 4.175 18 C 0.092 3.908 19 O -0.506 6.506 20 C -0.155 4.155 21 H 0.051 0.949 22 H 0.045 0.955 23 H 0.038 0.962 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.097 0.903 27 H 0.034 0.966 28 H 0.262 0.738 29 H 0.124 0.876 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.382 0.618 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.214 -4.601 -6.895 8.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.143 4.143 4 C 0.058 3.942 5 H 0.053 0.947 6 C -0.548 4.548 7 H 0.075 0.925 8 C -0.138 4.138 9 N -0.526 5.526 10 Si 0.720 3.280 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.203 1.203 14 C -0.011 4.011 15 C -0.137 4.137 16 C -0.130 4.130 17 C -0.193 4.193 18 C 0.048 3.952 19 O -0.315 6.315 20 C -0.173 4.173 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.116 0.884 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.142 0.858 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.236 0.764 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.587 -4.851 -6.742 8.326 hybrid contribution 0.844 1.153 0.122 1.434 sum 1.431 -3.698 -6.620 7.716 Atomic orbital electron populations 1.21744 0.97507 0.99853 1.01205 1.21624 0.94338 0.99939 1.00330 1.21679 0.96900 0.93138 1.02621 1.17956 0.92482 0.95529 0.88270 0.94694 1.21068 1.31367 0.96885 1.05431 0.92501 1.24947 0.95020 0.98210 0.95646 1.69861 1.36416 1.36841 1.09437 0.86655 0.79243 0.84781 0.77331 1.20237 1.21277 1.20296 1.20553 0.91778 0.91325 0.97419 1.21124 1.00685 1.00303 0.91629 1.20955 0.98171 0.95811 0.98103 1.21110 1.03558 0.97757 0.96896 1.18476 0.96387 0.87628 0.92663 1.84791 1.20683 1.29574 1.96473 1.21403 1.01599 0.97158 0.97173 0.93018 0.93566 0.94254 0.93718 0.93066 0.88438 0.94672 0.92836 0.85827 0.86726 0.86802 0.76398 0.86235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.91 37.15 0.37 -2.13 16 2 C -0.12 -2.48 5.75 -26.74 -0.15 -2.64 16 3 C -0.11 -2.42 4.42 -26.73 -0.12 -2.53 16 4 C 0.08 1.84 1.95 -92.92 -0.18 1.66 16 5 H 0.03 0.92 7.87 -51.93 -0.41 0.51 16 6 C -0.51 -13.48 8.24 -34.44 -0.28 -13.76 16 7 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 8 C 0.06 1.70 5.29 -17.82 -0.09 1.60 16 9 N -0.89 -24.48 11.29 55.43 0.63 -23.85 16 10 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 C -0.01 -0.23 3.71 -104.65 -0.39 -0.61 16 15 C -0.12 -2.34 8.65 -39.56 -0.34 -2.68 16 16 C -0.11 -1.90 10.04 -39.60 -0.40 -2.29 16 17 C -0.17 -2.89 9.99 -39.43 -0.39 -3.29 16 18 C 0.09 1.63 6.71 -39.21 -0.26 1.37 16 19 O -0.51 -7.81 13.50 -19.42 -0.26 -8.08 16 20 C -0.15 -3.06 9.61 -39.43 -0.38 -3.44 16 21 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.04 0.88 7.38 -51.93 -0.38 0.50 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.10 2.50 5.95 -51.93 -0.31 2.19 16 27 H 0.03 0.79 7.22 -51.93 -0.37 0.41 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.12 2.43 7.54 -52.49 -0.40 2.04 16 30 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 31 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.38 3.99 9.06 45.56 0.41 4.40 16 33 H 0.12 2.32 7.94 -52.48 -0.42 1.90 16 LS Contribution 277.49 15.07 4.18 4.18 Total: -1.00 -28.38 277.49 -7.05 -35.43 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -3.95 Total: 5.29 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: -2.63 Total: -28.76 kcal Atomic # 7 Polarization: -24.48 SS G_CDS: 0.63 Total: -23.85 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.26 Total: -8.08 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.38 -7.05 -35.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261277878.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.171 kcal (2) G-P(sol) polarization free energy of solvation -28.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds