Wall clock time and date at job start Mon Mar 30 2020 20:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47069 * 304.99600 * 4 3 2 6 6 C 1.50703 * 109.46801 * 184.99876 * 4 3 2 7 7 H 1.08000 * 120.00226 * 239.99505 * 6 4 3 8 8 C 1.37876 * 119.99741 * 60.00200 * 6 4 3 9 9 N 1.31511 * 120.00557 * 359.97438 * 8 6 4 10 10 Si 1.86802 * 119.99840 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47337 * 59.99624 * 10 8 6 12 12 H 1.48502 * 109.47220 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47168 * 299.99658 * 10 8 6 14 14 C 1.50697 * 109.47204 * 65.00067 * 4 3 2 15 15 C 1.38285 * 119.97247 * 59.99882 * 14 4 3 16 16 C 1.38248 * 120.10774 * 179.97438 * 15 14 4 17 17 C 1.38166 * 120.05964 * 359.95389 * 16 15 14 18 18 C 1.38712 * 119.94034 * 0.02562 * 17 16 15 19 19 O 1.35898 * 120.05489 * 180.02562 * 18 17 16 20 20 C 1.38119 * 119.96759 * 239.71808 * 14 4 3 21 21 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 22 22 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 23 23 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 25 25 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 26 26 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 27 27 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 28 28 H 0.96999 * 120.00539 * 180.02562 * 9 8 6 29 29 H 1.07995 * 119.94644 * 359.97438 * 15 14 4 30 30 H 1.08003 * 119.97081 * 179.97438 * 16 15 14 31 31 H 1.08000 * 120.02876 * 180.02562 * 17 16 15 32 32 H 0.96701 * 114.00003 * 89.99881 * 19 18 17 33 33 H 1.08005 * 120.03407 * 0.02562 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9336 0.8528 0.8410 6 6 4.0724 2.8577 0.1232 7 1 4.6931 3.2803 -0.6531 8 6 3.7398 3.6132 1.2276 9 7 2.9837 3.0988 2.1727 10 14 4.3632 5.3674 1.3814 11 1 3.8683 6.1709 0.2348 12 1 3.8681 5.9591 2.6503 13 1 5.8482 5.3668 1.3812 14 6 4.0718 0.8421 -1.2886 15 6 3.7369 1.4228 -2.4981 16 6 4.1961 0.8748 -3.6813 17 6 4.9918 -0.2545 -3.6581 18 6 5.3295 -0.8386 -2.4461 19 8 6.1125 -1.9491 -2.4205 20 6 4.8705 -0.2844 -1.2597 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5139 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 2.7494 3.6304 2.9495 29 1 3.1156 2.3060 -2.5184 30 1 3.9328 1.3300 -4.6247 31 1 5.3506 -0.6819 -4.5827 32 1 7.0596 -1.7614 -2.3684 33 1 5.1352 -0.7352 -0.3146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261277878.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:56 Heat of formation + Delta-G solvation = -61.124852 kcal Electronic energy + Delta-G solvation = -14824.049415 eV Core-core repulsion = 12427.189983 eV Total energy + Delta-G solvation = -2396.859433 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.64872 -38.23592 -36.39806 -34.34513 -32.63917 -30.78940 -29.22352 -27.00123 -24.35191 -23.38929 -22.40295 -21.09888 -18.87477 -18.10315 -17.26727 -16.62450 -16.41434 -15.88956 -15.71227 -14.65976 -14.57845 -14.48015 -14.02374 -13.34619 -12.95051 -12.89428 -12.87697 -12.73430 -12.47618 -12.35977 -12.00799 -11.87942 -11.65888 -11.37925 -10.95240 -10.85827 -10.39912 -9.59494 -9.27280 -8.07680 -6.22102 0.48009 0.61475 1.42639 1.42907 1.50774 2.42990 2.91151 3.18343 3.42749 4.11967 4.19155 4.31009 4.33908 4.45251 4.54188 4.64382 4.78441 4.87518 5.08225 5.09758 5.17049 5.25562 5.28254 5.35574 5.55504 5.58599 5.62854 5.66260 5.76734 6.01877 6.13895 6.19846 6.39651 6.85881 6.93222 7.45024 8.95470 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.022819 B = 0.009810 C = 0.007947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.778783 B = 2853.636929 C = 3522.293465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C -0.096 4.096 4 C 0.077 3.923 5 H -0.002 1.002 6 C -0.523 4.523 7 H 0.051 0.949 8 C 0.016 3.984 9 N -0.913 5.913 10 Si 0.952 3.048 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.274 1.274 14 C -0.032 4.032 15 C -0.136 4.136 16 C -0.100 4.100 17 C -0.166 4.166 18 C 0.100 3.900 19 O -0.509 6.509 20 C -0.175 4.175 21 H 0.046 0.954 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.047 0.953 25 H 0.039 0.961 26 H 0.067 0.933 27 H 0.034 0.966 28 H 0.261 0.739 29 H 0.115 0.885 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.406 0.594 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.593 -4.936 -9.087 10.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.154 4.154 3 C -0.134 4.134 4 C 0.059 3.941 5 H 0.016 0.984 6 C -0.561 4.561 7 H 0.070 0.930 8 C -0.183 4.183 9 N -0.552 5.552 10 Si 0.777 3.223 11 H -0.195 1.195 12 H -0.210 1.210 13 H -0.200 1.200 14 C -0.032 4.032 15 C -0.154 4.154 16 C -0.118 4.118 17 C -0.185 4.185 18 C 0.056 3.944 19 O -0.322 6.322 20 C -0.194 4.194 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.133 0.867 30 H 0.169 0.831 31 H 0.167 0.833 32 H 0.264 0.736 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.987 -5.191 -8.941 10.385 hybrid contribution 0.805 1.171 0.760 1.612 sum 1.792 -4.020 -8.181 9.289 Atomic orbital electron populations 1.21690 0.95016 1.01591 1.01439 1.21501 0.96485 0.97608 0.99841 1.21485 0.96233 0.94822 1.00886 1.17792 0.93251 0.94134 0.88928 0.98374 1.21365 1.31229 0.98215 1.05335 0.93045 1.25683 0.95272 1.01880 0.95434 1.70001 1.37355 1.38081 1.09795 0.85712 0.78677 0.80445 0.77438 1.19474 1.20964 1.19988 1.20272 0.93652 0.92630 0.96652 1.21121 1.01624 1.00527 0.92164 1.21289 0.96689 0.95446 0.98328 1.21480 1.02314 0.97065 0.97612 1.18492 0.96098 0.87519 0.92264 1.84727 1.22456 1.28650 1.96331 1.21399 1.02469 0.97476 0.98027 0.93515 0.92622 0.91742 0.93413 0.94254 0.91493 0.94738 0.92953 0.86714 0.83120 0.83334 0.73582 0.87286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.67 9.91 71.98 0.71 -3.96 16 2 C -0.12 -4.72 5.75 30.59 0.18 -4.54 16 3 C -0.10 -4.57 4.42 30.59 0.14 -4.44 16 4 C 0.08 3.91 1.95 -12.29 -0.02 3.89 16 5 H 0.00 -0.11 7.87 -2.39 -0.02 -0.13 16 6 C -0.52 -28.60 8.24 25.60 0.21 -28.39 16 7 H 0.05 2.79 7.60 -2.91 -0.02 2.77 16 8 C 0.02 0.89 5.29 84.65 0.45 1.34 16 9 N -0.91 -52.14 11.29 21.45 0.24 -51.90 16 10 Si 0.95 43.26 29.54 68.60 2.03 45.28 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 14 C -0.03 -1.38 3.71 -19.88 -0.07 -1.45 16 15 C -0.14 -5.24 8.65 22.28 0.19 -5.05 16 16 C -0.10 -3.05 10.04 22.25 0.22 -2.83 16 17 C -0.17 -4.88 9.99 22.37 0.22 -4.65 16 18 C 0.10 3.34 6.71 22.51 0.15 3.49 16 19 O -0.51 -14.29 13.50 -92.40 -1.25 -15.54 16 20 C -0.18 -6.95 9.61 22.37 0.21 -6.74 16 21 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.05 1.88 7.38 -2.39 -0.02 1.87 16 25 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.07 3.59 5.95 -2.39 -0.01 3.57 16 27 H 0.03 1.59 7.22 -2.39 -0.02 1.57 16 28 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.11 4.52 7.54 -2.91 -0.02 4.50 16 30 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 31 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 32 H 0.41 7.23 9.06 -74.06 -0.67 6.56 16 33 H 0.11 4.41 7.94 -2.91 -0.02 4.38 16 Total: -1.00 -62.08 277.49 4.03 -58.05 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.42 Total: 17.42 kcal Atomic # 6 Polarization: -55.92 SS G_CDS: 2.59 Total: -53.33 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.24 Total: -51.90 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -1.25 Total: -15.54 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -62.08 4.03 -58.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261277878.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.072 kcal (2) G-P(sol) polarization free energy of solvation -62.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds