Wall clock time and date at job start Mon Mar 30 2020 20:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99475 * 2 1 4 4 H 1.48503 * 109.46825 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47146 * 300.00153 * 3 2 1 6 6 H 1.48494 * 109.47039 * 60.00103 * 3 2 1 7 7 C 1.37872 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99632 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00151 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46403 * 60.00465 * 9 7 2 11 11 C 1.50694 * 109.47373 * 300.00522 * 9 7 2 12 12 C 1.39876 * 126.03821 * 299.97662 * 11 9 7 13 13 N 1.30834 * 108.20073 * 180.28579 * 12 11 9 14 14 N 1.40084 * 108.20770 * 359.58566 * 13 12 11 15 15 H 0.97005 * 126.03823 * 180.17723 * 14 13 12 16 16 C 1.34947 * 107.92204 * 0.41501 * 14 13 12 17 17 C 1.52993 * 109.47057 * 180.02562 * 9 7 2 18 18 C 1.54276 * 110.03575 * 297.90831 * 17 9 7 19 19 C 1.54957 * 104.16293 * 217.14097 * 18 17 9 20 20 C 1.54892 * 102.77913 * 37.88297 * 19 18 17 21 21 C 1.53878 * 110.03188 * 180.69436 * 17 9 7 22 22 H 0.96998 * 120.00416 * 359.97438 * 1 2 3 23 23 H 1.08002 * 125.89548 * 0.02562 * 12 11 9 24 24 H 1.08009 * 126.12504 * 179.78630 * 16 14 13 25 25 H 1.08997 * 110.01929 * 59.30282 * 17 9 7 26 26 H 1.09002 * 110.48308 * 335.78626 * 18 17 9 27 27 H 1.08998 * 110.48155 * 98.42852 * 18 17 9 28 28 H 1.09002 * 110.71800 * 279.57372 * 19 18 17 29 29 H 1.08995 * 110.92785 * 156.29540 * 19 18 17 30 30 H 1.09003 * 110.48608 * 203.40727 * 20 19 18 31 31 H 1.09000 * 110.59306 * 80.82189 * 20 19 18 32 32 H 1.09004 * 110.03156 * 238.57026 * 21 17 9 33 33 H 1.09000 * 110.03161 * 359.95196 * 21 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1938 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6243 -2.5567 -0.8904 11 6 0.3852 -2.5793 1.2301 12 6 0.8321 -2.5389 2.5549 13 7 -0.2089 -2.6412 3.3407 14 7 -1.3539 -2.7405 2.5397 15 1 -2.2667 -2.8248 2.8569 16 6 -0.9621 -2.7035 1.2489 17 6 2.2455 -3.6619 -0.0005 18 6 3.1046 -3.6228 -1.2814 19 6 3.2918 -5.1141 -1.6581 20 6 1.9145 -5.7311 -1.3094 21 6 1.4894 -5.0020 -0.0181 22 1 -0.4851 0.8400 0.0004 23 1 1.8596 -2.4442 2.8740 24 1 -1.6082 -2.7620 0.3854 25 1 2.8853 -3.6057 0.8801 26 1 2.5806 -3.0916 -2.0760 27 1 4.0685 -3.1554 -1.0799 28 1 4.0810 -5.5673 -1.0582 29 1 3.5058 -5.2232 -2.7212 30 1 2.0107 -6.8017 -1.1290 31 1 1.1967 -5.5426 -2.1078 32 1 1.7629 -5.5965 0.8537 33 1 0.4141 -4.8239 -0.0257 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261278692.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:07 Heat of formation + Delta-G solvation = 34.463865 kcal Electronic energy + Delta-G solvation = -15286.887188 eV Core-core repulsion = 12926.465545 eV Total energy + Delta-G solvation = -2360.421644 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.65654 -38.96700 -35.21902 -32.71241 -31.68871 -29.70963 -29.01270 -27.32930 -24.11900 -22.54142 -21.37325 -20.71776 -19.97501 -18.60485 -17.59740 -16.61493 -16.14078 -15.62315 -15.01965 -14.88402 -14.29429 -14.07454 -13.93436 -13.56850 -12.98054 -12.88998 -12.71018 -12.20821 -11.93367 -11.71833 -11.63479 -11.39622 -11.30291 -11.06083 -10.80573 -10.73828 -10.35864 -10.11317 -8.78880 -7.89242 -6.02969 1.38903 1.41618 1.45963 1.53729 2.41332 2.46828 2.56013 3.36794 4.02811 4.08128 4.15543 4.36480 4.52281 4.79196 4.82231 4.93786 5.01672 5.05882 5.12339 5.17716 5.23582 5.29127 5.36107 5.50822 5.59850 5.69455 5.74138 5.81294 5.94221 6.15913 6.26324 6.53485 6.84759 7.07626 7.16460 7.62945 9.09366 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.020150 B = 0.013675 C = 0.009099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.241857 B = 2047.099866 C = 3076.450163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.295 1.295 7 C -0.509 4.509 8 H 0.052 0.948 9 C 0.123 3.877 10 H 0.002 0.998 11 C -0.156 4.156 12 C 0.039 3.961 13 N -0.341 5.341 14 N -0.483 5.483 15 H 0.440 0.560 16 C 0.046 3.954 17 C -0.073 4.073 18 C -0.107 4.107 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.113 4.113 22 H 0.250 0.750 23 H 0.170 0.830 24 H 0.167 0.833 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.089 -8.990 -1.234 9.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.176 4.176 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.222 1.222 7 C -0.547 4.547 8 H 0.070 0.930 9 C 0.104 3.896 10 H 0.020 0.980 11 C -0.167 4.167 12 C -0.146 4.146 13 N -0.166 5.166 14 N -0.195 5.195 15 H 0.284 0.716 16 C -0.100 4.100 17 C -0.092 4.092 18 C -0.144 4.144 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.151 4.151 22 H 0.059 0.941 23 H 0.187 0.813 24 H 0.184 0.816 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.564 -8.913 -0.052 8.931 hybrid contribution -0.041 1.594 -0.584 1.698 sum 0.524 -7.320 -0.636 7.366 Atomic orbital electron populations 1.70092 1.06618 1.25835 1.51483 1.25494 0.95390 1.01167 0.95578 0.85922 0.79737 0.81695 0.76734 1.19091 1.21238 1.22166 1.21428 0.92642 0.91401 1.49258 0.93004 1.17182 0.91099 0.91973 0.89380 0.97961 1.20385 0.93266 1.07281 0.95779 1.23624 0.97880 1.00456 0.92620 1.76946 0.92544 1.27371 1.19721 1.45965 1.08428 1.61022 1.04043 0.71565 1.22205 0.96620 1.03529 0.87599 1.21673 0.96247 0.94228 0.97016 1.22252 0.98723 0.96268 0.97193 1.22511 0.97223 0.94856 1.01040 1.22329 0.96927 0.99383 0.96953 1.22133 0.99543 0.95705 0.97686 0.94100 0.81310 0.81593 0.93332 0.93306 0.92965 0.91117 0.90999 0.90671 0.92245 0.92751 0.93307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.35 12.11 21.45 0.26 -50.09 16 2 C 0.02 1.25 5.30 84.65 0.45 1.70 16 3 Si 0.93 43.68 29.54 68.60 2.03 45.70 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 7 C -0.51 -26.45 7.89 25.60 0.20 -26.25 16 8 H 0.05 2.69 7.53 -2.91 -0.02 2.66 16 9 C 0.12 5.74 1.44 -12.29 -0.02 5.72 16 10 H 0.00 0.12 8.09 -2.39 -0.02 0.10 16 11 C -0.16 -7.05 2.60 -20.15 -0.05 -7.10 16 12 C 0.04 1.75 11.56 85.24 0.99 2.73 16 13 N -0.34 -14.59 12.70 -57.02 -0.72 -15.32 16 14 N -0.48 -18.26 7.36 -57.59 -0.42 -18.68 16 15 H 0.44 12.93 8.96 -213.32 -1.91 11.01 16 16 C 0.05 1.91 11.43 83.54 0.95 2.86 16 17 C -0.07 -2.81 2.34 -10.07 -0.02 -2.84 16 18 C -0.11 -3.76 5.60 31.70 0.18 -3.58 16 19 C -0.12 -3.24 6.91 31.91 0.22 -3.02 16 20 C -0.12 -3.24 6.83 31.67 0.22 -3.02 16 21 C -0.11 -3.74 6.03 31.32 0.19 -3.55 16 22 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 23 H 0.17 7.11 8.06 -2.91 -0.02 7.09 16 24 H 0.17 6.39 8.06 -2.91 -0.02 6.36 16 25 H 0.05 1.92 8.06 -2.39 -0.02 1.90 16 26 H 0.05 1.89 7.84 -2.39 -0.02 1.87 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.05 1.73 7.02 -2.39 -0.02 1.71 16 Total: -1.00 -59.84 271.75 3.62 -56.22 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -0.82 Total: 18.51 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 3.30 Total: -36.34 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -0.89 Total: -84.10 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -59.84 3.62 -56.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261278692.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.685 kcal (2) G-P(sol) polarization free energy of solvation -59.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds