Wall clock time and date at job start Mon Mar 30 2020 20:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 11 11 N 1.46899 * 109.47365 * 59.99653 * 9 7 2 12 12 C 1.50706 * 109.47294 * 179.97438 * 9 7 2 13 13 C 1.41041 * 126.26304 * 279.68631 * 12 9 7 14 14 C 1.34317 * 107.32723 * 179.86281 * 13 12 9 15 15 N 1.36825 * 108.37943 * 0.43972 * 14 13 12 16 16 C 1.34977 * 126.26642 * 99.99131 * 12 9 7 17 17 C 1.46751 * 124.24319 * 179.62375 * 15 14 13 18 18 C 1.53208 * 108.78022 * 342.67674 * 17 15 14 19 19 C 1.53129 * 109.61944 * 50.88754 * 18 17 15 20 20 C 1.50974 * 127.44711 * 180.24554 * 14 13 12 21 21 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 22 22 H 1.00897 * 110.99782 * 60.00208 * 11 9 7 23 23 H 1.00903 * 110.99644 * 183.95724 * 11 9 7 24 24 H 1.07998 * 126.33409 * 0.02562 * 13 12 9 25 25 H 1.07991 * 125.89316 * 359.92538 * 16 12 9 26 26 H 1.09001 * 109.58743 * 102.46035 * 17 15 14 27 27 H 1.08998 * 109.58683 * 222.88725 * 17 15 14 28 28 H 1.08997 * 109.44730 * 290.83912 * 18 17 15 29 29 H 1.09001 * 109.42504 * 170.91321 * 18 17 15 30 30 H 1.09000 * 109.51300 * 170.10908 * 19 18 17 31 31 H 1.08999 * 109.51743 * 49.94606 * 19 18 17 32 32 H 1.09005 * 109.72321 * 284.11532 * 20 14 13 33 33 H 1.08993 * 109.72403 * 44.78575 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8904 11 7 0.4069 -2.5773 -1.1991 12 6 2.2304 -3.6446 0.0005 13 6 2.9180 -4.1543 -1.1205 14 6 3.6902 -5.1657 -0.6903 15 7 3.5005 -5.3104 0.6570 16 6 2.6058 -4.3742 1.0723 17 6 4.1709 -6.3227 1.4812 18 6 4.7350 -7.4117 0.5631 19 6 5.5599 -6.7661 -0.5539 20 6 4.6188 -6.0258 -1.5132 21 1 -0.4850 -0.8401 -0.0004 22 1 0.9652 -2.5260 -2.0380 23 1 -0.1570 -3.4140 -1.1905 24 1 2.8402 -3.7959 -2.1363 25 1 2.2561 -4.2379 2.0849 26 1 4.9837 -5.8590 2.0403 27 1 3.4537 -6.7638 2.1734 28 1 3.9136 -7.9792 0.1259 29 1 5.3705 -8.0812 1.1428 30 1 6.1018 -7.5386 -1.0994 31 1 6.2684 -6.0595 -0.1215 32 1 4.0387 -6.7469 -2.0891 33 1 5.2006 -5.3979 -2.1879 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261298803.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:37 Heat of formation + Delta-G solvation = 34.977599 kcal Electronic energy + Delta-G solvation = -14871.529851 eV Core-core repulsion = 12511.130484 eV Total energy + Delta-G solvation = -2360.399367 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.94352 -36.21989 -34.23425 -32.27019 -30.94479 -28.50665 -26.99325 -25.38250 -23.74966 -21.73500 -21.41035 -18.74744 -18.15861 -16.64435 -16.18941 -15.36490 -14.30318 -14.14130 -14.00021 -13.54460 -13.50616 -13.17489 -12.95781 -12.55577 -11.98639 -11.47999 -11.30211 -11.12573 -10.99064 -10.89726 -10.72260 -10.60101 -10.00029 -9.87394 -8.64054 -8.14977 -7.69459 -7.29824 -7.05624 -5.97948 -3.78305 2.84436 3.41391 3.56834 3.59579 3.77901 3.84892 4.53099 4.61879 4.72770 4.76227 5.05631 5.26238 5.35155 5.50166 5.59068 5.65029 5.71217 5.77720 5.82111 5.98565 6.11273 6.30178 6.35583 6.53965 6.92196 7.08182 7.48335 7.80263 7.94215 8.04973 8.28984 8.57609 8.91800 9.03411 9.28718 10.04179 11.40969 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.044757 B = 0.007042 C = 0.006869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.447399 B = 3975.013844 C = 4075.593883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.034 3.966 3 Si 1.062 2.938 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.598 4.598 8 H 0.042 0.958 9 C 0.266 3.734 10 H 0.027 0.973 11 N -0.827 5.827 12 C -0.140 4.140 13 C -0.185 4.185 14 C -0.003 4.003 15 N -0.455 5.455 16 C -0.035 4.035 17 C 0.109 3.891 18 C -0.131 4.131 19 C -0.123 4.123 20 C -0.046 4.046 21 H 0.289 0.711 22 H 0.324 0.676 23 H 0.298 0.702 24 H 0.124 0.876 25 H 0.151 0.849 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.464 -14.856 0.337 17.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.175 4.175 3 Si 0.892 3.108 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.637 4.637 8 H 0.061 0.939 9 C 0.156 3.844 10 H 0.045 0.955 11 N -0.353 5.353 12 C -0.149 4.149 13 C -0.210 4.210 14 C -0.113 4.113 15 N -0.134 5.134 16 C -0.163 4.163 17 C -0.013 4.013 18 C -0.168 4.168 19 C -0.160 4.160 20 C -0.084 4.084 21 H 0.101 0.899 22 H 0.136 0.864 23 H 0.108 0.892 24 H 0.142 0.858 25 H 0.168 0.832 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.057 -12.774 0.861 15.683 hybrid contribution 0.897 -2.529 -0.086 2.685 sum 9.955 -15.303 0.775 18.272 Atomic orbital electron populations 1.70537 1.06790 1.32644 1.43388 1.25578 0.96685 1.01675 0.93561 0.83677 0.74888 0.76052 0.76158 1.21042 1.21813 1.21928 1.21736 0.93333 0.90802 1.57841 0.93919 1.17695 0.87381 0.89904 0.89379 0.95497 1.59511 1.28541 1.41750 1.05496 1.21163 1.02622 0.99268 0.91807 1.20302 1.02430 0.99336 0.98963 1.20104 1.04941 1.02525 0.83758 1.43931 1.35523 1.27010 1.06929 1.21452 0.99765 0.95465 0.99575 1.21772 0.97072 0.88917 0.93544 1.21816 1.00325 0.97245 0.97458 1.21612 0.97924 0.99732 0.96758 1.20206 0.95147 0.96884 0.96139 0.89882 0.86399 0.89210 0.85794 0.83193 0.91045 0.90301 0.91080 0.90299 0.91217 0.91578 0.91064 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.27 13.51 55.43 0.75 -27.52 16 2 C 0.03 1.01 5.39 -17.82 -0.10 0.91 16 3 Si 1.06 26.48 29.90 -169.99 -5.08 21.40 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.60 -17.69 8.71 -34.44 -0.30 -17.99 16 8 H 0.04 1.30 7.74 -52.48 -0.41 0.89 16 9 C 0.27 7.03 2.68 -70.01 -0.19 6.84 16 10 H 0.03 0.77 8.01 -51.93 -0.42 0.36 16 11 N -0.83 -20.38 7.70 -6.65 -0.05 -20.43 16 12 C -0.14 -3.23 5.06 -104.72 -0.53 -3.76 16 13 C -0.18 -3.85 10.18 -39.90 -0.41 -4.26 16 14 C 0.00 -0.06 6.55 -81.61 -0.53 -0.59 16 15 N -0.45 -7.84 3.15 -112.21 -0.35 -8.19 16 16 C -0.04 -0.72 11.42 -16.86 -0.19 -0.91 16 17 C 0.11 1.34 6.96 -3.80 -0.03 1.31 16 18 C -0.13 -1.29 5.92 -26.56 -0.16 -1.45 16 19 C -0.12 -1.28 5.96 -26.45 -0.16 -1.44 16 20 C -0.05 -0.60 6.28 -27.53 -0.17 -0.77 16 21 H 0.29 9.10 6.39 -40.82 -0.26 8.84 16 22 H 0.32 7.81 8.23 -39.29 -0.32 7.49 16 23 H 0.30 6.58 9.06 -39.29 -0.36 6.23 16 24 H 0.12 2.52 7.72 -52.49 -0.41 2.12 16 25 H 0.15 2.84 8.06 -52.49 -0.42 2.42 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.73 8.11 -51.93 -0.42 0.30 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 270.97 15.07 4.08 4.08 Total: -1.00 -33.39 270.97 -8.18 -41.57 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -4.77 Total: 11.19 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -2.76 Total: -22.10 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.34 Total: -56.15 kcal Atomic # 14 Polarization: 26.48 SS G_CDS: -5.08 Total: 21.40 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.39 -8.18 -41.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261298803.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.550 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds