Wall clock time and date at job start Mon Mar 30 2020 20:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99728 * 2 1 4 4 H 1.48509 * 109.47094 * 269.99501 * 3 2 1 5 5 H 1.48500 * 109.47512 * 29.99483 * 3 2 1 6 6 H 1.48503 * 109.47389 * 149.99938 * 3 2 1 7 7 C 1.37871 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00251 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00010 * 180.02562 * 7 2 1 10 10 H 1.08995 * 109.46974 * 59.99996 * 9 7 2 11 11 N 1.46909 * 109.47080 * 300.00348 * 9 7 2 12 12 C 1.50700 * 109.47645 * 180.02562 * 9 7 2 13 13 C 1.41039 * 126.26213 * 80.03627 * 12 9 7 14 14 C 1.34327 * 107.32930 * 179.97438 * 13 12 9 15 15 N 1.36829 * 108.37285 * 359.80689 * 14 13 12 16 16 C 1.34976 * 126.26884 * 260.00790 * 12 9 7 17 17 C 1.46745 * 124.23631 * 180.13961 * 15 14 13 18 18 C 1.53212 * 108.78454 * 342.85448 * 17 15 14 19 19 C 1.53127 * 109.61103 * 50.89653 * 18 17 15 20 20 C 1.50964 * 127.44619 * 180.12572 * 14 13 12 21 21 H 0.97003 * 120.00002 * 0.02562 * 1 2 3 22 22 H 1.00899 * 110.99638 * 176.04358 * 11 9 7 23 23 H 1.00896 * 110.99322 * 299.99791 * 11 9 7 24 24 H 1.07993 * 126.33653 * 359.91897 * 13 12 9 25 25 H 1.08002 * 125.88851 * 359.97438 * 16 12 9 26 26 H 1.08997 * 109.59105 * 102.64663 * 17 15 14 27 27 H 1.09007 * 109.58204 * 223.06768 * 17 15 14 28 28 H 1.09003 * 109.44950 * 170.93630 * 18 17 15 29 29 H 1.08995 * 109.44772 * 290.85466 * 18 17 15 30 30 H 1.08998 * 109.51553 * 49.95279 * 19 18 17 31 31 H 1.09001 * 109.51021 * 170.11053 * 19 18 17 32 32 H 1.08998 * 109.72865 * 283.83080 * 20 14 13 33 33 H 1.09000 * 109.73078 * 44.51445 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 1 3.8744 -0.6800 0.8911 11 7 4.0017 -0.5017 -1.1983 12 6 4.0139 -2.6148 0.0010 13 6 4.1070 -3.4666 -1.1192 14 6 4.6021 -4.6393 -0.6901 15 7 4.8247 -4.5465 0.6567 16 6 4.4577 -3.3049 1.0728 17 6 5.3673 -5.6329 1.4806 18 6 5.2292 -6.9511 0.7121 19 6 5.8098 -6.7887 -0.6955 20 6 4.8878 -5.8716 -1.5141 21 1 -0.4850 0.8401 -0.0004 22 1 5.0082 -0.4316 -1.1894 23 1 3.6784 -0.9594 -2.0374 24 1 3.8304 -3.2218 -2.1340 25 1 4.5156 -2.9335 2.0853 26 1 6.4194 -5.4413 1.6912 27 1 4.8108 -5.6951 2.4159 28 1 5.7702 -7.7370 1.2393 29 1 4.1756 -7.2211 0.6412 30 1 6.8051 -6.3493 -0.6303 31 1 5.8723 -7.7640 -1.1782 32 1 3.9540 -6.3838 -1.7459 33 1 5.3918 -5.5878 -2.4379 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261298804.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:39 Heat of formation + Delta-G solvation = 15.443069 kcal Electronic energy + Delta-G solvation = -14874.171082 eV Core-core repulsion = 12512.924635 eV Total energy + Delta-G solvation = -2361.246447 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.31020 -37.53339 -35.78568 -33.87416 -33.24809 -30.01307 -28.35390 -27.94307 -25.11121 -23.39868 -22.43719 -20.09618 -19.45187 -18.76535 -17.67947 -16.56677 -16.41322 -15.90621 -15.21642 -15.02095 -14.67710 -14.47878 -14.36515 -14.12869 -13.95752 -13.31415 -12.82266 -12.73693 -12.53402 -12.07653 -11.93675 -11.79421 -11.73622 -11.56296 -11.27615 -10.71051 -9.39532 -9.09917 -8.65851 -8.19826 -6.30891 1.44232 1.51280 1.59688 1.73827 2.18732 2.21878 2.57053 3.15287 3.68736 3.83171 3.87915 4.02844 4.33029 4.35872 4.40707 4.49205 4.61224 4.76616 4.84947 4.87636 4.92645 5.03091 5.03220 5.12740 5.32239 5.46630 5.59936 5.79613 6.15486 6.28883 6.39520 6.62559 6.70638 6.83513 7.09710 7.45177 8.94184 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.053246 B = 0.007090 C = 0.007020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.730166 B = 3948.018917 C = 3987.617007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.020 3.980 3 Si 1.006 2.994 4 H -0.277 1.277 5 H -0.323 1.323 6 H -0.261 1.261 7 C -0.505 4.505 8 H 0.019 0.981 9 C 0.254 3.746 10 H 0.032 0.968 11 N -0.838 5.838 12 C -0.180 4.180 13 C -0.219 4.219 14 C 0.012 3.988 15 N -0.448 5.448 16 C -0.037 4.037 17 C 0.097 3.903 18 C -0.129 4.129 19 C -0.116 4.116 20 C -0.050 4.050 21 H 0.263 0.737 22 H 0.329 0.671 23 H 0.336 0.664 24 H 0.120 0.880 25 H 0.164 0.836 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.114 0.886 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.686 -14.470 0.427 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.178 4.178 3 Si 0.836 3.164 4 H -0.203 1.203 5 H -0.253 1.253 6 H -0.186 1.186 7 C -0.544 4.544 8 H 0.038 0.962 9 C 0.143 3.857 10 H 0.050 0.950 11 N -0.368 5.368 12 C -0.189 4.189 13 C -0.244 4.244 14 C -0.100 4.100 15 N -0.126 5.126 16 C -0.167 4.167 17 C -0.023 4.023 18 C -0.167 4.167 19 C -0.154 4.154 20 C -0.088 4.088 21 H 0.072 0.928 22 H 0.141 0.859 23 H 0.149 0.851 24 H 0.138 0.862 25 H 0.181 0.819 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.132 0.868 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 15.289 -14.039 0.947 20.779 hybrid contribution -0.086 0.209 -0.153 0.273 sum 15.204 -13.830 0.794 20.568 Atomic orbital electron populations 1.70113 1.08586 1.27989 1.52874 1.25929 0.95243 1.03733 0.92850 0.84758 0.77314 0.76276 0.78054 1.20336 1.25288 1.18622 1.21091 0.90775 0.92124 1.50403 0.96234 1.17673 0.92230 0.85839 0.89924 0.95001 1.59126 1.14246 1.57765 1.05649 1.20683 1.05228 0.98875 0.94072 1.20381 1.10762 0.94683 0.98624 1.20714 1.06991 0.97988 0.84333 1.44244 1.49809 1.11204 1.07299 1.21585 1.09487 0.86180 0.99454 1.22238 1.00092 0.85667 0.94329 1.21882 1.02583 0.95594 0.96613 1.21664 0.98343 1.00548 0.94833 1.20451 1.00626 0.90532 0.97159 0.92846 0.85919 0.85096 0.86241 0.81882 0.88964 0.89224 0.86770 0.91964 0.91294 0.88427 0.90314 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.18 13.96 21.45 0.30 -62.88 16 2 C 0.02 1.24 5.47 84.65 0.46 1.70 16 3 Si 1.01 52.00 26.03 68.60 1.79 53.78 16 4 H -0.28 -14.05 7.11 99.48 0.71 -13.35 16 5 H -0.32 -16.60 7.11 99.48 0.71 -15.89 16 6 H -0.26 -12.81 6.54 99.48 0.65 -12.16 16 7 C -0.51 -30.96 9.29 25.60 0.24 -30.72 16 8 H 0.02 1.34 7.98 -2.91 -0.02 1.32 16 9 C 0.25 12.69 2.56 43.42 0.11 12.80 16 10 H 0.03 1.64 7.20 -2.39 -0.02 1.62 16 11 N -0.84 -37.32 6.67 -174.94 -1.17 -38.49 16 12 C -0.18 -8.00 5.05 -19.93 -0.10 -8.10 16 13 C -0.22 -8.87 10.18 22.06 0.22 -8.64 16 14 C 0.01 0.39 6.55 40.97 0.27 0.66 16 15 N -0.45 -14.13 3.15 -508.91 -1.60 -15.73 16 16 C -0.04 -1.44 11.42 83.30 0.95 -0.49 16 17 C 0.10 1.98 6.95 86.40 0.60 2.58 16 18 C -0.13 -2.00 5.91 30.71 0.18 -1.82 16 19 C -0.12 -1.82 5.98 30.86 0.18 -1.64 16 20 C -0.05 -1.13 6.29 30.15 0.19 -0.94 16 21 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 22 H 0.33 12.53 9.06 -89.69 -0.81 11.71 16 23 H 0.34 14.76 8.24 -89.70 -0.74 14.02 16 24 H 0.12 4.79 7.73 -2.91 -0.02 4.76 16 25 H 0.16 5.71 8.06 -2.91 -0.02 5.68 16 26 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 30 H 0.07 1.07 8.12 -2.39 -0.02 1.05 16 31 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -75.84 267.87 2.13 -73.72 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -0.50 Total: 24.22 kcal Atomic # 6 Polarization: -37.93 SS G_CDS: 3.31 Total: -34.61 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -2.47 Total: -117.11 kcal Atomic # 14 Polarization: 52.00 SS G_CDS: 1.79 Total: 53.78 kcal Total: -75.84 2.13 -73.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261298804.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.160 kcal (2) G-P(sol) polarization free energy of solvation -75.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds