Wall clock time and date at job start Mon Mar 30 2020 20:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 H 1.09003 * 109.46975 * 305.67604 * 3 2 1 5 5 C 1.50698 * 109.47181 * 185.67427 * 3 2 1 6 6 H 1.07998 * 120.00126 * 245.59002 * 5 3 2 7 7 C 1.37884 * 120.00024 * 65.59525 * 5 3 2 8 8 N 1.31510 * 119.99827 * 197.00231 * 7 5 3 9 9 Si 1.86799 * 119.99614 * 17.00001 * 7 5 3 10 10 H 1.48507 * 109.46853 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.47252 * 299.99947 * 9 7 5 12 12 H 1.48502 * 109.47412 * 60.00231 * 9 7 5 13 13 C 1.50702 * 109.47048 * 65.67541 * 3 2 1 14 14 C 1.38162 * 120.02804 * 60.00368 * 13 3 2 15 15 C 1.38244 * 120.05616 * 180.02562 * 14 13 3 16 16 C 1.38283 * 120.10975 * 359.97182 * 15 14 13 17 17 C 1.50707 * 119.97220 * 180.02562 * 16 15 14 18 18 C 1.38118 * 120.06012 * 0.02562 * 16 15 14 19 19 C 1.38709 * 120.02558 * 239.72370 * 13 3 2 20 20 O 1.35902 * 120.05949 * 0.02562 * 19 13 3 21 21 H 1.09005 * 109.47402 * 60.00372 * 1 2 3 22 22 H 1.09006 * 109.46908 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47632 * 300.00255 * 1 2 3 24 24 H 1.09000 * 109.47676 * 240.00300 * 2 1 3 25 25 H 1.09005 * 109.47402 * 119.99627 * 2 1 3 26 26 H 0.96993 * 120.00372 * 354.53619 * 8 7 5 27 27 H 1.08000 * 119.97417 * 359.96913 * 14 13 3 28 28 H 1.08000 * 119.94429 * 180.02562 * 15 14 13 29 29 H 1.09003 * 109.46597 * 90.00216 * 17 16 15 30 30 H 1.08996 * 109.47029 * 210.00316 * 17 16 15 31 31 H 1.09003 * 109.47105 * 330.00399 * 17 16 15 32 32 H 1.07998 * 120.03519 * 179.97438 * 18 16 15 33 33 H 0.96703 * 113.99700 * 89.99874 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5959 1.9848 -0.8348 5 6 3.5403 1.4449 -0.1405 6 1 4.1580 1.8040 0.6694 7 6 4.1246 0.9887 -1.3031 8 7 5.4013 0.6735 -1.3176 9 14 3.1027 0.8183 -2.8574 10 1 3.9590 0.3114 -3.9598 11 1 1.9905 -0.1358 -2.6165 12 1 2.5460 2.1432 -3.2316 13 6 1.6556 2.1112 1.2947 14 6 2.1039 1.5991 2.4971 15 6 1.7513 2.2117 3.6851 16 6 0.9497 3.3385 3.6734 17 6 0.5676 4.0042 4.9703 18 6 0.4989 3.8544 2.4741 19 6 0.8562 3.2447 1.2799 20 8 0.4182 3.7534 0.0982 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.9500 0.8362 -0.5345 27 1 2.7296 0.7189 2.5089 28 1 2.1031 1.8101 4.6239 29 1 1.3119 4.7591 5.2242 30 1 -0.4080 4.4779 4.8619 31 1 0.5228 3.2571 5.7628 32 1 -0.1274 4.7342 2.4654 33 1 -0.4297 3.3926 -0.1951 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261300314.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:44 Heat of formation + Delta-G solvation = -41.948972 kcal Electronic energy + Delta-G solvation = -15076.239595 eV Core-core repulsion = 12680.211691 eV Total energy + Delta-G solvation = -2396.027904 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.50946 -36.32118 -35.35708 -32.13920 -31.31990 -29.35162 -28.13232 -25.61227 -22.36320 -22.24153 -21.30124 -19.26982 -17.55638 -17.24807 -15.61693 -15.18380 -14.55975 -14.08994 -13.50711 -13.37597 -13.16800 -13.01676 -12.53220 -12.40404 -11.98911 -11.84340 -11.29596 -11.09872 -10.90419 -10.78654 -10.46684 -10.40835 -9.80838 -9.71805 -9.36757 -8.85909 -8.22792 -8.20081 -7.73879 -6.40598 -4.02868 1.81622 1.93447 3.39775 3.47573 3.63575 4.19344 4.51545 4.74000 5.21995 5.26177 5.33175 5.54133 5.66033 5.73623 5.81687 5.93156 5.94333 6.00439 6.13239 6.21373 6.43454 6.49863 6.59687 6.76940 6.89364 6.92915 7.00459 7.09779 7.27180 7.45313 7.61864 8.11333 8.23285 8.41149 8.93576 9.64225 10.97365 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.034310 B = 0.009443 C = 0.008912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.903042 B = 2964.475773 C = 3141.011066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.052 3.948 4 H 0.037 0.963 5 C -0.588 4.588 6 H 0.056 0.944 7 C 0.031 3.969 8 N -0.908 5.908 9 Si 1.044 2.956 10 H -0.287 1.287 11 H -0.273 1.273 12 H -0.282 1.282 13 C -0.047 4.047 14 C -0.095 4.095 15 C -0.132 4.132 16 C -0.104 4.104 17 C -0.105 4.105 18 C -0.149 4.149 19 C 0.090 3.910 20 O -0.492 6.492 21 H 0.045 0.955 22 H 0.041 0.959 23 H 0.044 0.956 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.267 0.733 27 H 0.125 0.875 28 H 0.114 0.886 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.116 0.884 33 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.797 2.466 7.369 14.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C 0.033 3.967 4 H 0.055 0.945 5 C -0.625 4.625 6 H 0.074 0.926 7 C -0.174 4.174 8 N -0.542 5.542 9 Si 0.873 3.127 10 H -0.213 1.213 11 H -0.199 1.199 12 H -0.208 1.208 13 C -0.048 4.048 14 C -0.113 4.113 15 C -0.150 4.150 16 C -0.104 4.104 17 C -0.162 4.162 18 C -0.168 4.168 19 C 0.046 3.954 20 O -0.300 6.300 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.143 0.857 28 H 0.132 0.868 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.135 0.865 33 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -11.195 2.280 5.818 12.821 hybrid contribution -0.359 0.372 1.598 1.680 sum -11.554 2.652 7.416 13.983 Atomic orbital electron populations 1.21883 0.98499 1.00063 1.00519 1.22079 0.92657 0.99622 1.01914 1.18152 0.97627 0.90860 0.90108 0.94468 1.21945 0.89411 1.47799 1.03390 0.92558 1.25761 0.97627 0.92746 1.01268 1.70859 1.07407 1.41673 1.34275 0.84064 0.75469 0.77235 0.75955 1.21326 1.19894 1.20804 1.20600 0.93812 0.93092 0.97264 1.20963 0.98790 1.00335 0.91221 1.20972 0.99567 0.96477 0.97991 1.19540 0.99709 0.96715 0.94440 1.20686 1.01035 1.00051 0.94424 1.21107 1.02977 1.01017 0.91652 1.18372 0.98536 0.93950 0.84572 1.84867 1.41633 1.66871 1.36662 0.93625 0.94031 0.93701 0.91713 0.92918 0.92316 0.85722 0.86828 0.91780 0.92159 0.92002 0.86550 0.76837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.73 37.15 0.36 -2.28 16 2 C -0.12 -2.67 4.97 -26.73 -0.13 -2.81 16 3 C 0.05 1.22 1.49 -92.92 -0.14 1.08 16 4 H 0.04 0.90 5.66 -51.93 -0.29 0.61 16 5 C -0.59 -16.62 8.54 -34.44 -0.29 -16.91 16 6 H 0.06 1.73 7.77 -52.49 -0.41 1.33 16 7 C 0.03 0.89 5.31 -17.82 -0.09 0.79 16 8 N -0.91 -28.07 13.69 55.43 0.76 -27.31 16 9 Si 1.04 25.44 26.28 -169.99 -4.47 20.97 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.27 -6.03 5.71 56.52 0.32 -5.71 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C -0.05 -1.01 3.77 -104.47 -0.39 -1.40 16 14 C -0.09 -1.89 8.59 -39.61 -0.34 -2.23 16 15 C -0.13 -2.24 9.70 -39.56 -0.38 -2.62 16 16 C -0.10 -1.65 5.88 -104.65 -0.62 -2.26 16 17 C -0.11 -1.24 10.01 36.01 0.36 -0.88 16 18 C -0.15 -2.52 9.64 -39.43 -0.38 -2.91 16 19 C 0.09 1.75 6.68 -39.21 -0.26 1.49 16 20 O -0.49 -9.09 12.27 -19.43 -0.24 -9.32 16 21 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.04 0.74 7.40 -51.93 -0.38 0.36 16 24 H 0.06 1.47 4.81 -51.93 -0.25 1.22 16 25 H 0.05 1.12 7.21 -51.93 -0.37 0.74 16 26 H 0.27 8.23 8.73 -40.82 -0.36 7.88 16 27 H 0.12 2.54 7.54 -52.49 -0.40 2.15 16 28 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 31 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 32 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 33 H 0.38 5.03 9.06 45.56 0.41 5.45 16 LS Contribution 271.38 15.07 4.09 4.09 Total: -1.00 -31.63 271.38 -6.05 -37.67 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -3.88 Total: 4.85 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: -2.31 Total: -30.94 kcal Atomic # 7 Polarization: -28.07 SS G_CDS: 0.76 Total: -27.31 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -0.24 Total: -9.32 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -4.47 Total: 20.97 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.63 -6.05 -37.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261300314.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.274 kcal (2) G-P(sol) polarization free energy of solvation -31.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds