Wall clock time and date at job start Mon Mar 30 2020 20:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 H 1.09003 * 109.46975 * 305.67604 * 3 2 1 5 5 C 1.50698 * 109.47181 * 185.67427 * 3 2 1 6 6 H 1.07998 * 120.00126 * 245.59002 * 5 3 2 7 7 C 1.37884 * 120.00024 * 65.59525 * 5 3 2 8 8 N 1.31510 * 119.99827 * 197.00231 * 7 5 3 9 9 Si 1.86799 * 119.99614 * 17.00001 * 7 5 3 10 10 H 1.48507 * 109.46853 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.47252 * 299.99947 * 9 7 5 12 12 H 1.48502 * 109.47412 * 60.00231 * 9 7 5 13 13 C 1.50702 * 109.47048 * 65.67541 * 3 2 1 14 14 C 1.38162 * 120.02804 * 60.00368 * 13 3 2 15 15 C 1.38244 * 120.05616 * 180.02562 * 14 13 3 16 16 C 1.38283 * 120.10975 * 359.97182 * 15 14 13 17 17 C 1.50707 * 119.97220 * 180.02562 * 16 15 14 18 18 C 1.38118 * 120.06012 * 0.02562 * 16 15 14 19 19 C 1.38709 * 120.02558 * 239.72370 * 13 3 2 20 20 O 1.35902 * 120.05949 * 0.02562 * 19 13 3 21 21 H 1.09005 * 109.47402 * 60.00372 * 1 2 3 22 22 H 1.09006 * 109.46908 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47632 * 300.00255 * 1 2 3 24 24 H 1.09000 * 109.47676 * 240.00300 * 2 1 3 25 25 H 1.09005 * 109.47402 * 119.99627 * 2 1 3 26 26 H 0.96993 * 120.00372 * 354.53619 * 8 7 5 27 27 H 1.08000 * 119.97417 * 359.96913 * 14 13 3 28 28 H 1.08000 * 119.94429 * 180.02562 * 15 14 13 29 29 H 1.09003 * 109.46597 * 90.00216 * 17 16 15 30 30 H 1.08996 * 109.47029 * 210.00316 * 17 16 15 31 31 H 1.09003 * 109.47105 * 330.00399 * 17 16 15 32 32 H 1.07998 * 120.03519 * 179.97438 * 18 16 15 33 33 H 0.96703 * 113.99700 * 89.99874 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5959 1.9848 -0.8348 5 6 3.5403 1.4449 -0.1405 6 1 4.1580 1.8040 0.6694 7 6 4.1246 0.9887 -1.3031 8 7 5.4013 0.6735 -1.3176 9 14 3.1027 0.8183 -2.8574 10 1 3.9590 0.3114 -3.9598 11 1 1.9905 -0.1358 -2.6165 12 1 2.5460 2.1432 -3.2316 13 6 1.6556 2.1112 1.2947 14 6 2.1039 1.5991 2.4971 15 6 1.7513 2.2117 3.6851 16 6 0.9497 3.3385 3.6734 17 6 0.5676 4.0042 4.9703 18 6 0.4989 3.8544 2.4741 19 6 0.8562 3.2447 1.2799 20 8 0.4182 3.7534 0.0982 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.9500 0.8362 -0.5345 27 1 2.7296 0.7189 2.5089 28 1 2.1031 1.8101 4.6239 29 1 1.3119 4.7591 5.2242 30 1 -0.4080 4.4779 4.8619 31 1 0.5228 3.2571 5.7628 32 1 -0.1274 4.7342 2.4654 33 1 -0.4297 3.3926 -0.1951 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261300314.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:44 Heat of formation + Delta-G solvation = -63.236474 kcal Electronic energy + Delta-G solvation = -15077.162690 eV Core-core repulsion = 12680.211691 eV Total energy + Delta-G solvation = -2396.950999 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.94740 -37.69019 -37.06357 -34.21715 -32.69378 -30.73168 -29.71626 -27.13026 -24.20304 -23.67297 -22.75115 -20.97590 -19.54107 -18.74789 -17.18418 -16.62105 -15.97894 -15.77062 -15.06918 -14.92617 -14.65146 -14.35389 -14.30314 -13.79597 -13.32661 -13.27440 -12.71942 -12.51447 -12.46801 -12.30290 -12.19888 -12.08378 -11.56993 -11.37272 -11.12691 -10.82996 -10.39153 -9.63239 -9.24188 -8.67304 -6.34534 0.42090 0.52420 1.43430 1.53107 1.71325 2.48097 2.80108 3.07374 3.41733 3.99039 4.04980 4.18963 4.35469 4.46086 4.51227 4.55793 4.64649 4.80399 4.87862 4.93378 5.04148 5.12239 5.18754 5.27919 5.32039 5.39524 5.51628 5.63596 5.70943 5.85064 6.03234 6.05811 6.17102 6.58187 6.96008 7.41705 8.64214 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.034310 B = 0.009443 C = 0.008912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.903042 B = 2964.475773 C = 3141.011066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C 0.055 3.945 4 H 0.035 0.965 5 C -0.588 4.588 6 H 0.011 0.989 7 C -0.023 4.023 8 N -0.942 5.942 9 Si 1.082 2.918 10 H -0.291 1.291 11 H -0.235 1.235 12 H -0.268 1.268 13 C -0.084 4.084 14 C -0.114 4.114 15 C -0.134 4.134 16 C -0.093 4.093 17 C -0.104 4.104 18 C -0.149 4.149 19 C 0.083 3.917 20 O -0.506 6.506 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.041 0.959 26 H 0.249 0.751 27 H 0.102 0.898 28 H 0.139 0.861 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.957 3.318 8.223 17.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C 0.036 3.964 4 H 0.053 0.947 5 C -0.626 4.626 6 H 0.029 0.971 7 C -0.220 4.220 8 N -0.579 5.579 9 Si 0.903 3.097 10 H -0.217 1.217 11 H -0.159 1.159 12 H -0.194 1.194 13 C -0.085 4.085 14 C -0.132 4.132 15 C -0.152 4.152 16 C -0.093 4.093 17 C -0.160 4.160 18 C -0.168 4.168 19 C 0.039 3.961 20 O -0.317 6.317 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.120 0.880 28 H 0.157 0.843 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.163 0.837 33 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -14.387 3.131 6.701 16.177 hybrid contribution 0.645 0.189 1.487 1.631 sum -13.742 3.320 8.187 16.337 Atomic orbital electron populations 1.21774 0.94773 1.01856 1.01575 1.21935 0.95964 0.97534 1.00628 1.17993 0.94025 0.92649 0.91691 0.94687 1.22185 0.92338 1.46341 1.01746 0.97063 1.27233 0.97827 0.92249 1.04697 1.70993 1.08645 1.44605 1.33618 0.83626 0.75265 0.78789 0.71994 1.21740 1.15875 1.19381 1.20489 0.96608 0.94954 0.96442 1.20926 0.99420 1.00412 0.92455 1.21251 0.99409 0.96779 0.97766 1.20059 0.97541 0.95579 0.96133 1.20778 1.02317 1.00564 0.92338 1.21429 1.02905 1.01497 0.90921 1.18511 0.98477 0.93320 0.85784 1.84796 1.43303 1.67013 1.36618 0.92247 0.91856 0.92979 0.93231 0.94021 0.94194 0.87955 0.84275 0.90718 0.90123 0.90267 0.83728 0.74320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 9.73 71.98 0.70 -3.87 16 2 C -0.12 -5.20 4.97 30.59 0.15 -5.05 16 3 C 0.06 2.64 1.49 -12.28 -0.02 2.63 16 4 H 0.04 1.68 5.66 -2.39 -0.01 1.66 16 5 C -0.59 -34.77 8.54 25.60 0.22 -34.55 16 6 H 0.01 0.73 7.77 -2.91 -0.02 0.71 16 7 C -0.02 -1.39 5.31 84.66 0.45 -0.94 16 8 N -0.94 -61.02 13.69 21.45 0.29 -60.72 16 9 Si 1.08 51.35 26.28 68.60 1.80 53.15 16 10 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 11 H -0.23 -9.66 5.71 99.48 0.57 -9.09 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 C -0.08 -3.62 3.77 -19.77 -0.07 -3.69 16 14 C -0.11 -4.61 8.59 22.25 0.19 -4.42 16 15 C -0.13 -4.33 9.70 22.28 0.22 -4.12 16 16 C -0.09 -2.65 5.88 -19.88 -0.12 -2.76 16 17 C -0.10 -1.96 10.01 71.24 0.71 -1.25 16 18 C -0.15 -4.60 9.64 22.37 0.22 -4.38 16 19 C 0.08 3.12 6.68 22.51 0.15 3.27 16 20 O -0.51 -17.67 12.27 -92.45 -1.13 -18.81 16 21 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 22 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 23 H 0.05 1.59 7.40 -2.39 -0.02 1.58 16 24 H 0.05 2.21 4.81 -2.39 -0.01 2.20 16 25 H 0.04 1.80 7.21 -2.38 -0.02 1.79 16 26 H 0.25 16.44 8.73 -92.71 -0.81 15.63 16 27 H 0.10 4.45 7.54 -2.91 -0.02 4.43 16 28 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.25 8.08 -2.39 -0.02 1.23 16 31 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 32 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 33 H 0.40 9.59 9.06 -74.06 -0.67 8.92 16 Total: -1.00 -71.85 271.38 4.01 -67.84 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.25 Total: 17.67 kcal Atomic # 6 Polarization: -61.93 SS G_CDS: 2.80 Total: -59.14 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: 0.29 Total: -60.72 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -1.13 Total: -18.81 kcal Atomic # 14 Polarization: 51.35 SS G_CDS: 1.80 Total: 53.15 kcal Total: -71.85 4.01 -67.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261300314.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.603 kcal (2) G-P(sol) polarization free energy of solvation -71.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds