Wall clock time and date at job start Mon Mar 30 2020 20:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47100 * 2 1 4 4 O 1.42893 * 109.47030 * 65.00371 * 3 2 1 5 5 C 1.50697 * 109.47250 * 185.00123 * 3 2 1 6 6 H 1.08005 * 119.99807 * 120.00158 * 5 3 2 7 7 C 1.37872 * 120.00252 * 300.00439 * 5 3 2 8 8 N 1.31516 * 119.99977 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00255 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47118 * 59.99656 * 9 7 5 11 11 H 1.48499 * 109.47238 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46747 * 299.99787 * 9 7 5 13 13 C 1.50701 * 109.47199 * 305.00260 * 3 2 1 14 14 C 1.38254 * 120.00254 * 329.99913 * 13 3 2 15 15 C 1.38212 * 120.00319 * 180.02562 * 14 13 3 16 16 C 1.38260 * 119.99650 * 0.26336 * 15 14 13 17 17 C 1.38209 * 120.00092 * 359.45889 * 16 15 14 18 18 C 1.50699 * 120.00241 * 180.28376 * 17 16 15 19 19 C 1.38216 * 120.00020 * 150.02200 * 13 3 2 20 20 H 1.09005 * 109.47163 * 299.99586 * 1 2 3 21 21 H 1.08999 * 109.47561 * 59.99690 * 1 2 3 22 22 H 1.09006 * 109.46973 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47163 * 240.00414 * 2 1 3 24 24 H 1.08999 * 109.47561 * 120.00310 * 2 1 3 25 25 H 0.96705 * 114.00689 * 180.02562 * 4 3 2 26 26 H 0.97001 * 119.99880 * 180.02562 * 8 7 5 27 27 H 1.07999 * 119.99740 * 0.02562 * 14 13 3 28 28 H 1.08002 * 119.99812 * 179.97438 * 15 14 13 29 29 H 1.08004 * 119.99616 * 179.72197 * 16 15 14 30 30 H 1.08998 * 109.46800 * 270.28165 * 18 17 16 31 31 H 1.09007 * 109.47085 * 30.27502 * 18 17 16 32 32 H 1.09002 * 109.47462 * 150.27727 * 18 17 16 33 33 H 1.08001 * 119.99686 * 359.97250 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 1.6620 2.0813 1.2210 5 6 3.5418 1.4443 -0.1239 6 1 4.0140 1.9361 -0.9616 7 6 4.3132 0.8183 0.8322 8 7 3.7383 0.2200 1.8525 9 14 6.1749 0.8200 0.6782 10 1 6.6703 2.2199 0.6778 11 1 6.7671 0.0862 1.8254 12 1 6.5672 0.1557 -0.5906 13 6 1.4390 2.1878 -1.1638 14 6 1.1129 1.5106 -2.3242 15 6 0.5622 2.1943 -3.3918 16 6 0.3426 3.5563 -3.3012 17 6 0.6633 4.2322 -2.1392 18 6 0.4179 5.7157 -2.0381 19 6 1.2143 3.5484 -1.0713 20 1 -0.3634 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 1.9525 3.0011 1.2902 26 1 4.2810 -0.2201 2.5253 27 1 1.2884 0.4475 -2.3965 28 1 0.3079 1.6653 -4.2984 29 1 -0.0836 4.0913 -4.1371 30 1 1.3002 6.2542 -2.3840 31 1 -0.4381 5.9854 -2.6568 32 1 0.2141 5.9805 -1.0006 33 1 1.4690 4.0774 -0.1648 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306163174.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:47 Heat of formation + Delta-G solvation = -37.155887 kcal Electronic energy + Delta-G solvation = -15259.680696 eV Core-core repulsion = 12863.860636 eV Total energy + Delta-G solvation = -2395.820060 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.11158 -36.19442 -32.70652 -32.20239 -31.07427 -29.89357 -26.70917 -26.20443 -23.32101 -21.55613 -21.09738 -18.70096 -17.13952 -16.26396 -14.89193 -14.66130 -14.49755 -13.77662 -13.44646 -13.12702 -12.90626 -12.67418 -12.10752 -11.88557 -11.68628 -11.39164 -11.22611 -10.91953 -10.87481 -10.73249 -10.49488 -10.17585 -10.09050 -9.65467 -8.94808 -8.56618 -8.31674 -8.06497 -7.71069 -5.99933 -4.20769 2.03872 2.13181 3.27836 3.32975 3.35886 4.33377 4.52127 5.20526 5.32558 5.38296 5.61262 5.69736 5.85460 5.89874 6.06004 6.10495 6.20488 6.25953 6.36217 6.48744 6.56891 6.69303 6.77736 6.99457 7.11242 7.18562 7.20360 7.40272 7.65577 7.75989 7.81558 7.99866 8.23464 8.79387 9.32896 9.55558 10.98963 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.029288 B = 0.010084 C = 0.009069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.787547 B = 2775.948787 C = 3086.686524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.097 4.097 3 C 0.286 3.714 4 O -0.555 6.555 5 C -0.557 4.557 6 H 0.055 0.945 7 C 0.083 3.917 8 N -0.856 5.856 9 Si 0.890 3.110 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 C -0.053 4.053 14 C -0.121 4.121 15 C -0.126 4.126 16 C -0.148 4.148 17 C -0.096 4.096 18 C -0.108 4.108 19 C -0.121 4.121 20 H 0.050 0.950 21 H 0.043 0.957 22 H 0.031 0.969 23 H 0.048 0.952 24 H 0.098 0.902 25 H 0.346 0.654 26 H 0.261 0.739 27 H 0.120 0.880 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.156 4.801 -6.302 9.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.135 4.135 3 C 0.246 3.754 4 O -0.358 6.358 5 C -0.595 4.595 6 H 0.074 0.926 7 C -0.123 4.123 8 N -0.491 5.491 9 Si 0.717 3.283 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C -0.053 4.053 14 C -0.139 4.139 15 C -0.144 4.144 16 C -0.166 4.166 17 C -0.096 4.096 18 C -0.165 4.165 19 C -0.139 4.139 20 H 0.070 0.930 21 H 0.062 0.938 22 H 0.050 0.950 23 H 0.066 0.934 24 H 0.116 0.884 25 H 0.191 0.809 26 H 0.071 0.929 27 H 0.138 0.862 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.402 4.089 -6.006 9.054 hybrid contribution 1.372 0.507 -0.321 1.498 sum -4.030 4.597 -6.327 8.798 Atomic orbital electron populations 1.21947 0.98783 0.99132 1.01097 1.21401 0.92063 0.97109 1.02879 1.17716 0.91633 0.88282 0.77731 1.86544 1.80351 1.27756 1.41179 1.21450 0.90615 1.37551 1.09844 0.92632 1.24980 0.98342 0.94158 0.94833 1.69997 1.34968 1.33364 1.10800 0.86717 0.85642 0.78311 0.77627 1.20176 1.21168 1.20154 1.21279 0.92779 0.93961 0.97316 1.21085 0.99528 1.00132 0.93143 1.21020 1.00617 0.94392 0.98336 1.20741 1.04045 0.94531 0.97289 1.19786 0.99899 0.95486 0.94391 1.20719 1.01189 0.92490 1.02090 1.20795 1.00623 0.94385 0.98123 0.93040 0.93803 0.94952 0.93385 0.88400 0.80926 0.92909 0.86188 0.87170 0.87407 0.91815 0.92314 0.91897 0.86692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.34 37.16 0.35 -2.82 16 2 C -0.10 -2.32 4.35 -26.73 -0.12 -2.43 16 3 C 0.29 7.00 0.54 -92.92 -0.05 6.95 16 4 O -0.55 -13.94 11.64 -35.23 -0.41 -14.35 16 5 C -0.56 -14.97 8.20 -34.44 -0.28 -15.25 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.08 2.24 5.24 -17.82 -0.09 2.15 16 8 N -0.86 -23.97 10.93 55.43 0.61 -23.37 16 9 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 C -0.05 -1.15 4.01 -104.62 -0.42 -1.57 16 14 C -0.12 -2.40 7.40 -39.58 -0.29 -2.69 16 15 C -0.13 -2.16 10.05 -39.58 -0.40 -2.55 16 16 C -0.15 -2.43 9.70 -39.58 -0.38 -2.81 16 17 C -0.10 -1.63 5.88 -104.63 -0.62 -2.25 16 18 C -0.11 -1.43 10.01 36.01 0.36 -1.07 16 19 C -0.12 -2.39 8.97 -39.58 -0.36 -2.74 16 20 H 0.05 1.11 7.82 -51.93 -0.41 0.71 16 21 H 0.04 0.87 5.70 -51.93 -0.30 0.57 16 22 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 1.11 6.81 -51.93 -0.35 0.76 16 24 H 0.10 2.62 6.22 -51.93 -0.32 2.30 16 25 H 0.35 7.83 7.32 45.56 0.33 8.16 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.12 2.34 6.21 -52.49 -0.33 2.02 16 28 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 32 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 33 H 0.12 2.16 6.49 -52.49 -0.34 1.82 16 LS Contribution 268.31 15.07 4.04 4.04 Total: -1.00 -28.93 268.31 -6.87 -35.80 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -3.78 Total: 9.09 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: -2.30 Total: -27.09 kcal Atomic # 7 Polarization: -23.97 SS G_CDS: 0.61 Total: -23.37 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.41 Total: -14.35 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.93 -6.87 -35.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306163174.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.360 kcal (2) G-P(sol) polarization free energy of solvation -28.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds