Wall clock time and date at job start Mon Mar 30 2020 20:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.47027 * 2 1 4 4 C 1.35906 * 116.99733 * 179.97438 * 3 2 1 5 5 C 1.39155 * 119.93174 * 0.02562 * 4 3 2 6 6 C 1.38522 * 120.44012 * 180.02562 * 5 4 3 7 7 C 1.37665 * 120.30422 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.07416 * 180.02562 * 7 6 5 9 9 C 1.40733 * 119.85853 * 359.97438 * 7 6 5 10 10 C 1.41402 * 120.21946 * 179.97438 * 9 7 6 11 11 H 1.08006 * 120.00141 * 312.27831 * 10 9 7 12 12 C 1.39931 * 120.00050 * 131.99241 * 10 9 7 13 13 N 1.30828 * 120.00101 * 340.88326 * 12 10 9 14 14 Si 1.86802 * 120.00170 * 160.87986 * 12 10 9 15 15 H 1.48504 * 109.46920 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47171 * 120.00374 * 14 12 10 17 17 H 1.48498 * 109.47107 * 240.00670 * 14 12 10 18 18 C 1.38095 * 119.92986 * 180.25858 * 4 3 2 19 19 C 1.50701 * 120.15430 * 359.97438 * 18 4 3 20 20 H 1.09000 * 109.47274 * 60.00120 * 1 2 3 21 21 H 1.08998 * 109.47041 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47140 * 299.99849 * 1 2 3 23 23 H 1.08998 * 109.47140 * 240.00151 * 2 1 3 24 24 H 1.09000 * 109.47274 * 119.99879 * 2 1 3 25 25 H 1.07996 * 119.78111 * 0.02562 * 5 4 3 26 26 H 1.07998 * 119.84304 * 179.97438 * 6 5 4 27 27 H 1.08997 * 109.46936 * 264.69664 * 8 7 6 28 28 H 1.09006 * 109.46930 * 24.68624 * 8 7 6 29 29 H 1.08994 * 109.47472 * 144.69136 * 8 7 6 30 30 H 0.96999 * 120.00365 * 185.05427 * 13 12 10 31 31 H 1.09000 * 109.47197 * 270.23961 * 19 18 4 32 32 H 1.09004 * 109.47053 * 30.23106 * 19 18 4 33 33 H 1.08995 * 109.47161 * 150.23222 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.2000 0.4208 0.0005 6 6 5.5748 0.5900 0.0016 7 6 6.1190 1.8545 0.0022 8 6 7.6155 2.0327 0.0028 9 6 5.2749 2.9806 0.0011 10 6 5.8257 4.2829 0.0022 11 1 6.6145 4.5351 0.6956 12 6 5.3529 5.2433 -0.8989 13 7 4.6959 4.8707 -1.9672 14 14 5.6597 7.0576 -0.5768 15 1 6.4206 7.2138 0.6889 16 1 6.4429 7.6341 -1.6990 17 1 4.3600 7.7671 -0.4643 18 6 3.8800 2.8021 0.0060 19 6 2.9638 3.9986 0.0107 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.7822 -0.5751 -0.0003 26 1 6.2227 -0.2741 0.0020 27 1 7.9646 2.1696 1.0262 28 1 8.0868 1.1485 -0.4265 29 1 7.8774 2.9085 -0.5908 30 1 4.4321 5.5292 -2.6287 31 1 2.7397 4.2887 -1.0158 32 1 2.0377 3.7450 0.5269 33 1 3.4510 4.8272 0.5245 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307306860.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:51 Heat of formation + Delta-G solvation = -37.834982 kcal Electronic energy + Delta-G solvation = -15047.714974 eV Core-core repulsion = 12651.865466 eV Total energy + Delta-G solvation = -2395.849508 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.97188 -36.77857 -33.59453 -32.04684 -30.41740 -30.10939 -27.00567 -24.89939 -24.38452 -22.92836 -20.06973 -19.27211 -17.53951 -16.05066 -15.40199 -15.14475 -14.68244 -13.71038 -13.21463 -12.94146 -12.76760 -12.29012 -12.26625 -12.06798 -11.71515 -11.63097 -11.28407 -11.18217 -10.84257 -10.78779 -10.56771 -10.48935 -10.28243 -9.65872 -9.53080 -9.39402 -8.75928 -7.02985 -6.67563 -6.57799 -4.35827 2.83223 2.93166 3.16243 3.18644 3.20991 4.04931 4.13778 4.72775 5.28341 5.41726 5.43824 5.63783 5.84625 6.04643 6.11671 6.21869 6.27364 6.40034 6.50344 6.70262 6.80266 6.93956 7.00502 7.06768 7.17699 7.28080 7.34056 7.72813 7.79291 7.88570 7.93605 8.21040 8.45848 8.75997 8.94373 9.02073 10.39539 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.029026 B = 0.010244 C = 0.007954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.429635 B = 2732.611757 C = 3519.552700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.059 3.941 3 O -0.323 6.323 4 C 0.127 3.873 5 C -0.295 4.295 6 C -0.080 4.080 7 C -0.190 4.190 8 C -0.080 4.080 9 C 0.148 3.852 10 C -0.480 4.480 11 H 0.081 0.919 12 C 0.085 3.915 13 N -0.799 5.799 14 Si 0.894 3.106 15 H -0.262 1.262 16 H -0.277 1.277 17 H -0.273 1.273 18 C -0.153 4.153 19 C -0.071 4.071 20 H 0.062 0.938 21 H 0.068 0.932 22 H 0.061 0.939 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.041 0.959 28 H 0.035 0.965 29 H 0.064 0.936 30 H 0.277 0.723 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.152 -4.295 2.057 5.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.017 4.017 3 O -0.238 6.238 4 C 0.084 3.916 5 C -0.314 4.314 6 C -0.098 4.098 7 C -0.191 4.191 8 C -0.137 4.137 9 C 0.146 3.854 10 C -0.510 4.510 11 H 0.099 0.901 12 C -0.131 4.131 13 N -0.426 5.426 14 Si 0.719 3.281 15 H -0.186 1.186 16 H -0.203 1.203 17 H -0.198 1.198 18 C -0.155 4.155 19 C -0.127 4.127 20 H 0.081 0.919 21 H 0.087 0.913 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.114 0.886 26 H 0.110 0.890 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.464 -4.054 1.878 5.653 hybrid contribution 0.197 0.454 -0.081 0.501 sum -3.267 -3.600 1.797 5.183 Atomic orbital electron populations 1.21744 0.94037 1.01798 1.03045 1.22484 0.94594 0.84058 1.00521 1.86003 1.21147 1.26912 1.89766 1.18676 0.80233 0.94176 0.98551 1.20491 0.94166 0.95710 1.21079 1.20252 0.93544 0.95691 1.00312 1.19994 0.95009 0.92768 1.11347 1.20355 0.92961 1.00501 0.99902 1.17065 0.89124 0.92507 0.86734 1.19225 1.18971 0.94369 1.18470 0.90133 1.25656 0.92890 1.00187 0.94401 1.69816 1.30008 1.36146 1.06609 0.86504 0.78933 0.83238 0.79471 1.18571 1.20304 1.19819 1.19346 0.94329 0.90460 1.11385 1.20348 0.95512 0.95866 1.01020 0.91896 0.91300 0.91979 0.93037 0.93111 0.88602 0.89033 0.94024 0.94600 0.91733 0.91239 0.91937 0.95425 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.28 37.16 0.38 -1.57 16 2 C 0.06 1.00 5.46 37.16 0.20 1.20 16 3 O -0.32 -7.11 9.17 -19.44 -0.18 -7.29 16 4 C 0.13 3.12 6.65 -39.29 -0.26 2.86 16 5 C -0.29 -6.73 9.05 -39.14 -0.35 -7.09 16 6 C -0.08 -1.82 9.65 -39.69 -0.38 -2.21 16 7 C -0.19 -4.67 5.94 -103.89 -0.62 -5.29 16 8 C -0.08 -1.70 9.49 36.01 0.34 -1.36 16 9 C 0.15 3.95 5.20 -106.85 -0.56 3.39 16 10 C -0.48 -12.62 6.88 -37.75 -0.26 -12.88 16 11 H 0.08 2.07 7.85 -52.48 -0.41 1.65 16 12 C 0.08 2.14 3.53 -17.35 -0.06 2.08 16 13 N -0.80 -21.07 10.89 55.55 0.60 -20.46 16 14 Si 0.89 19.05 29.60 -169.99 -5.03 14.02 16 15 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 16 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 17 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 18 C -0.15 -4.03 5.60 -103.77 -0.58 -4.62 16 19 C -0.07 -1.77 8.08 36.01 0.29 -1.48 16 20 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.05 0.84 7.65 -51.93 -0.40 0.44 16 24 H 0.05 0.81 7.65 -51.93 -0.40 0.41 16 25 H 0.10 1.91 6.27 -52.49 -0.33 1.59 16 26 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.03 0.67 8.05 -51.93 -0.42 0.25 16 29 H 0.06 1.42 7.32 -51.93 -0.38 1.04 16 30 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 31 H 0.06 1.62 6.72 -51.93 -0.35 1.27 16 32 H 0.03 0.63 7.53 -51.93 -0.39 0.24 16 33 H 0.05 1.33 6.42 -51.93 -0.33 1.00 16 LS Contribution 271.17 15.07 4.09 4.09 Total: -1.00 -28.37 271.17 -7.03 -35.40 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -4.66 Total: 1.21 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: -1.85 Total: -26.96 kcal Atomic # 7 Polarization: -21.07 SS G_CDS: 0.60 Total: -20.46 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.18 Total: -7.29 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.37 -7.03 -35.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307306860.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.440 kcal (2) G-P(sol) polarization free energy of solvation -28.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds