Wall clock time and date at job start Mon Mar 30 2020 20:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.47027 * 2 1 4 4 C 1.35906 * 116.99733 * 179.97438 * 3 2 1 5 5 C 1.39155 * 119.93174 * 0.02562 * 4 3 2 6 6 C 1.38522 * 120.44012 * 180.02562 * 5 4 3 7 7 C 1.37665 * 120.30422 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.07416 * 180.02562 * 7 6 5 9 9 C 1.40733 * 119.85853 * 359.97438 * 7 6 5 10 10 C 1.41402 * 120.21946 * 179.97438 * 9 7 6 11 11 H 1.08006 * 120.00141 * 312.27831 * 10 9 7 12 12 C 1.39931 * 120.00050 * 131.99241 * 10 9 7 13 13 N 1.30828 * 120.00101 * 340.88326 * 12 10 9 14 14 Si 1.86802 * 120.00170 * 160.87986 * 12 10 9 15 15 H 1.48504 * 109.46920 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47171 * 120.00374 * 14 12 10 17 17 H 1.48498 * 109.47107 * 240.00670 * 14 12 10 18 18 C 1.38095 * 119.92986 * 180.25858 * 4 3 2 19 19 C 1.50701 * 120.15430 * 359.97438 * 18 4 3 20 20 H 1.09000 * 109.47274 * 60.00120 * 1 2 3 21 21 H 1.08998 * 109.47041 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47140 * 299.99849 * 1 2 3 23 23 H 1.08998 * 109.47140 * 240.00151 * 2 1 3 24 24 H 1.09000 * 109.47274 * 119.99879 * 2 1 3 25 25 H 1.07996 * 119.78111 * 0.02562 * 5 4 3 26 26 H 1.07998 * 119.84304 * 179.97438 * 6 5 4 27 27 H 1.08997 * 109.46936 * 264.69664 * 8 7 6 28 28 H 1.09006 * 109.46930 * 24.68624 * 8 7 6 29 29 H 1.08994 * 109.47472 * 144.69136 * 8 7 6 30 30 H 0.96999 * 120.00365 * 185.05427 * 13 12 10 31 31 H 1.09000 * 109.47197 * 270.23961 * 19 18 4 32 32 H 1.09004 * 109.47053 * 30.23106 * 19 18 4 33 33 H 1.08995 * 109.47161 * 150.23222 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.2000 0.4208 0.0005 6 6 5.5748 0.5900 0.0016 7 6 6.1190 1.8545 0.0022 8 6 7.6155 2.0327 0.0028 9 6 5.2749 2.9806 0.0011 10 6 5.8257 4.2829 0.0022 11 1 6.6145 4.5351 0.6956 12 6 5.3529 5.2433 -0.8989 13 7 4.6959 4.8707 -1.9672 14 14 5.6597 7.0576 -0.5768 15 1 6.4206 7.2138 0.6889 16 1 6.4429 7.6341 -1.6990 17 1 4.3600 7.7671 -0.4643 18 6 3.8800 2.8021 0.0060 19 6 2.9638 3.9986 0.0107 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.7822 -0.5751 -0.0003 26 1 6.2227 -0.2741 0.0020 27 1 7.9646 2.1696 1.0262 28 1 8.0868 1.1485 -0.4265 29 1 7.8774 2.9085 -0.5908 30 1 4.4321 5.5292 -2.6287 31 1 2.7397 4.2887 -1.0158 32 1 2.0377 3.7450 0.5269 33 1 3.4510 4.8272 0.5245 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307306860.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:51 Heat of formation + Delta-G solvation = -52.721619 kcal Electronic energy + Delta-G solvation = -15048.360507 eV Core-core repulsion = 12651.865466 eV Total energy + Delta-G solvation = -2396.495041 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.70647 -38.50738 -35.47370 -33.65682 -32.10507 -31.72588 -28.89008 -26.71145 -26.22697 -24.31362 -21.83362 -21.07157 -19.32050 -17.89099 -16.92440 -16.81743 -16.45714 -15.45444 -14.94450 -14.62356 -14.42422 -13.89278 -13.81519 -13.45421 -13.40012 -13.30063 -13.01468 -12.87383 -12.72124 -12.35928 -12.29462 -12.00650 -11.97396 -11.47578 -11.24715 -11.14610 -10.65407 -8.94829 -8.52154 -8.44739 -6.32905 1.00470 1.06367 1.41407 1.46622 1.53780 2.27442 2.60975 2.85370 3.52058 4.11413 4.19095 4.36157 4.39115 4.49671 4.61928 4.74677 4.84122 4.95853 4.97846 5.05542 5.08450 5.12951 5.18645 5.25927 5.32960 5.37107 5.47548 5.83072 5.92897 6.05113 6.12081 6.31266 6.57486 6.94927 7.04013 7.10438 8.52316 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.029026 B = 0.010244 C = 0.007954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.429635 B = 2732.611757 C = 3519.552700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.047 3.953 3 O -0.341 6.341 4 C 0.118 3.882 5 C -0.294 4.294 6 C -0.082 4.082 7 C -0.214 4.214 8 C -0.074 4.074 9 C 0.117 3.883 10 C -0.503 4.503 11 H 0.076 0.924 12 C 0.050 3.950 13 N -0.834 5.834 14 Si 0.958 3.042 15 H -0.259 1.259 16 H -0.269 1.269 17 H -0.270 1.270 18 C -0.190 4.190 19 C -0.055 4.055 20 H 0.058 0.942 21 H 0.104 0.896 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.126 0.874 26 H 0.125 0.875 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.282 0.718 31 H 0.046 0.954 32 H 0.035 0.965 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.294 -5.408 2.395 6.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.028 4.028 3 O -0.256 6.256 4 C 0.074 3.926 5 C -0.313 4.313 6 C -0.100 4.100 7 C -0.215 4.215 8 C -0.130 4.130 9 C 0.115 3.885 10 C -0.534 4.534 11 H 0.094 0.906 12 C -0.163 4.163 13 N -0.461 5.461 14 Si 0.780 3.220 15 H -0.182 1.182 16 H -0.194 1.194 17 H -0.195 1.195 18 C -0.192 4.192 19 C -0.112 4.112 20 H 0.077 0.923 21 H 0.122 0.878 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.144 0.856 26 H 0.143 0.857 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.609 -5.185 2.221 6.697 hybrid contribution 0.180 0.627 -0.175 0.675 sum -3.430 -4.558 2.046 6.060 Atomic orbital electron populations 1.21772 0.91223 1.04067 1.02869 1.22906 0.96868 0.81790 1.01224 1.85983 1.19838 1.30313 1.89459 1.18835 0.81662 0.94102 0.97983 1.20884 0.94226 0.96686 1.19538 1.20659 0.94181 0.96216 0.98976 1.20451 0.96590 0.93060 1.11370 1.20312 0.91211 1.00943 1.00569 1.17453 0.89878 0.93561 0.87613 1.19363 1.19676 0.95263 1.19105 0.90576 1.26322 0.92370 1.03930 0.93682 1.69876 1.31208 1.37596 1.07461 0.85529 0.78888 0.78103 0.79489 1.18223 1.19423 1.19477 1.19633 0.94759 0.91724 1.13120 1.20156 0.95634 0.95522 0.99883 0.92319 0.87757 0.91938 0.92551 0.92001 0.85582 0.85673 0.92811 0.91999 0.93408 0.90816 0.93537 0.94622 0.93723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 10.28 71.98 0.74 -2.61 16 2 C 0.05 1.47 5.46 71.98 0.39 1.87 16 3 O -0.34 -14.73 9.17 -92.49 -0.85 -15.58 16 4 C 0.12 5.76 6.65 22.46 0.15 5.90 16 5 C -0.29 -12.89 9.05 22.56 0.20 -12.68 16 6 C -0.08 -3.61 9.65 22.20 0.21 -3.39 16 7 C -0.21 -10.40 5.94 -19.39 -0.12 -10.51 16 8 C -0.07 -3.04 9.49 71.24 0.68 -2.37 16 9 C 0.12 6.35 5.20 -21.31 -0.11 6.24 16 10 C -0.50 -27.06 6.88 23.46 0.16 -26.90 16 11 H 0.08 4.00 7.85 -2.91 -0.02 3.98 16 12 C 0.05 2.57 3.53 85.25 0.30 2.87 16 13 N -0.83 -44.93 10.89 21.82 0.24 -44.70 16 14 Si 0.96 39.51 29.60 68.60 2.03 41.54 16 15 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 16 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 17 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 18 C -0.19 -10.19 5.60 -19.31 -0.11 -10.30 16 19 C -0.06 -2.84 8.08 71.24 0.58 -2.26 16 20 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.06 1.70 7.65 -2.39 -0.02 1.68 16 24 H 0.06 1.79 7.65 -2.39 -0.02 1.78 16 25 H 0.13 4.64 6.27 -2.91 -0.02 4.62 16 26 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.06 2.17 8.05 -2.38 -0.02 2.15 16 29 H 0.05 2.10 7.32 -2.39 -0.02 2.08 16 30 H 0.28 13.96 8.30 -92.71 -0.77 13.19 16 31 H 0.05 2.48 6.72 -2.39 -0.02 2.47 16 32 H 0.03 1.68 7.53 -2.39 -0.02 1.66 16 33 H 0.04 2.28 6.42 -2.39 -0.02 2.27 16 Total: -1.00 -61.32 271.17 5.59 -55.73 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 1.09 Total: 17.16 kcal Atomic # 6 Polarization: -57.23 SS G_CDS: 3.08 Total: -54.15 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.24 Total: -44.70 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.85 Total: -15.58 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -61.32 5.59 -55.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307306860.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.012 kcal (2) G-P(sol) polarization free energy of solvation -61.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds