Wall clock time and date at job start Mon Mar 30 2020 20:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47848 * 2 1 4 4 C 1.53005 * 109.47097 * 119.99775 * 2 1 3 5 5 O 1.42896 * 109.46827 * 294.99835 * 4 2 1 6 6 C 1.53003 * 109.47322 * 239.99163 * 2 1 3 7 7 H 1.09003 * 109.47264 * 299.90797 * 6 2 1 8 8 C 1.50703 * 109.46775 * 59.90878 * 6 2 1 9 9 H 1.07995 * 120.00088 * 26.24446 * 8 6 2 10 10 C 1.37884 * 119.99757 * 206.25138 * 8 6 2 11 11 N 1.31505 * 120.00009 * 354.23935 * 10 8 6 12 12 Si 1.86797 * 119.99621 * 173.97240 * 10 8 6 13 13 H 1.48499 * 109.47098 * 180.27161 * 12 10 8 14 14 H 1.48509 * 109.47250 * 300.26739 * 12 10 8 15 15 H 1.48495 * 109.47664 * 60.27219 * 12 10 8 16 16 C 1.50698 * 109.47193 * 179.90551 * 6 2 1 17 17 C 1.38237 * 120.00122 * 296.66180 * 16 6 2 18 18 C 1.38239 * 119.99899 * 179.78963 * 17 16 6 19 19 C 1.38237 * 119.99594 * 0.44248 * 18 17 16 20 20 C 1.38231 * 120.00304 * 359.81210 * 19 18 17 21 21 C 1.38232 * 120.00196 * 359.97438 * 20 19 18 22 22 H 1.09001 * 109.47542 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47313 * 300.00441 * 1 2 3 24 24 H 1.09005 * 109.46691 * 60.00490 * 1 2 3 25 25 H 1.08998 * 109.46909 * 54.99452 * 4 2 1 26 26 H 1.09003 * 109.47668 * 174.99857 * 4 2 1 27 27 H 0.96703 * 114.00096 * 179.97438 * 5 4 2 28 28 H 0.97000 * 120.00073 * 354.19110 * 11 10 8 29 29 H 1.07999 * 120.00163 * 359.97438 * 17 16 6 30 30 H 1.07999 * 119.99726 * 180.27017 * 18 17 16 31 31 H 1.08000 * 119.99194 * 179.83319 * 19 18 17 32 32 H 1.07996 * 119.99877 * 180.02562 * 20 19 18 33 33 H 1.08000 * 120.00213 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.6619 0.0169 2.4130 6 6 2.0400 -0.7214 -1.2491 7 1 1.6780 -1.7496 -1.2482 8 6 1.5358 -0.0125 -2.4797 9 1 1.2967 1.0398 -2.4368 10 6 1.3796 -0.7074 -3.6603 11 7 1.7763 -1.9583 -3.7444 12 14 0.5978 0.1260 -5.1380 13 1 0.5398 -0.8305 -6.2725 14 1 -0.7777 0.5639 -4.7891 15 1 1.4095 1.3069 -5.5274 16 6 3.5470 -0.7194 -1.2503 17 6 4.2365 0.4766 -1.3214 18 6 5.6189 0.4787 -1.3180 19 6 6.3117 -0.7158 -1.2528 20 6 5.6221 -1.9120 -1.1871 21 6 4.2398 -1.9139 -1.1860 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.6052 -1.7197 1.2953 26 1 3.1263 -0.7995 1.2057 27 1 1.9525 -0.3831 3.2441 28 1 2.2543 -2.3663 -3.0055 29 1 3.6953 1.4096 -1.3765 30 1 6.1576 1.4134 -1.3691 31 1 7.3916 -0.7142 -1.2529 32 1 6.1634 -2.8451 -1.1357 33 1 3.7011 -2.8485 -1.1342 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308582624.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:53 Heat of formation + Delta-G solvation = -50.473263 kcal Electronic energy + Delta-G solvation = -15160.666600 eV Core-core repulsion = 12764.269055 eV Total energy + Delta-G solvation = -2396.397545 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.82456 -36.84933 -34.78777 -32.06580 -30.18007 -30.08034 -26.19339 -25.68121 -23.11456 -21.80264 -20.77818 -19.10053 -17.26592 -16.53780 -15.99424 -14.86149 -14.24153 -14.15302 -13.75570 -13.54595 -12.92690 -12.74100 -12.47177 -12.09809 -11.80472 -11.54986 -11.03492 -10.84211 -10.80980 -10.40332 -10.16373 -10.04181 -9.96426 -9.51856 -9.44860 -8.73704 -8.45601 -8.15168 -7.63596 -6.37926 -4.10509 2.17718 2.24520 3.43151 3.43715 3.62249 4.48732 4.61532 4.79609 5.32070 5.58132 5.58335 5.66163 5.72239 5.79611 5.97377 6.07910 6.18661 6.30921 6.39697 6.48654 6.60314 6.68040 6.88476 6.92866 7.01249 7.16881 7.20344 7.25313 7.38837 7.68684 7.84253 7.97496 8.16472 8.39842 8.82363 9.59647 10.99890 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.013275 C = 0.009118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.903275 B = 2108.740541 C = 3070.134282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.069 4.069 3 H 0.063 0.937 4 C 0.076 3.924 5 O -0.576 6.576 6 C 0.066 3.934 7 H 0.040 0.960 8 C -0.581 4.581 9 H 0.053 0.947 10 C 0.024 3.976 11 N -0.905 5.905 12 Si 1.062 2.938 13 H -0.283 1.283 14 H -0.287 1.287 15 H -0.288 1.288 16 C -0.029 4.029 17 C -0.107 4.107 18 C -0.129 4.129 19 C -0.153 4.153 20 C -0.125 4.125 21 C -0.134 4.134 22 H 0.040 0.960 23 H 0.039 0.961 24 H 0.066 0.934 25 H 0.037 0.963 26 H 0.042 0.958 27 H 0.367 0.633 28 H 0.273 0.727 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.716 1.456 7.227 8.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.087 4.087 3 H 0.082 0.918 4 C -0.001 4.001 5 O -0.380 6.380 6 C 0.047 3.953 7 H 0.058 0.942 8 C -0.618 4.618 9 H 0.071 0.929 10 C -0.181 4.181 11 N -0.540 5.540 12 Si 0.890 3.110 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.215 1.215 16 C -0.030 4.030 17 C -0.125 4.125 18 C -0.147 4.147 19 C -0.172 4.172 20 C -0.143 4.143 21 C -0.152 4.152 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.085 0.915 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.212 0.788 28 H 0.084 0.916 29 H 0.133 0.867 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.925 1.571 5.197 6.167 hybrid contribution 1.007 -0.199 1.803 2.074 sum 3.932 1.373 7.000 8.145 Atomic orbital electron populations 1.21597 0.95199 1.00779 1.00745 1.21100 0.96207 0.99501 0.91920 0.91849 1.22505 0.97879 0.94085 0.85668 1.86503 1.81638 1.53612 1.16241 1.18103 0.86646 0.97432 0.93136 0.94152 1.21742 1.47502 0.97601 0.94965 0.92857 1.25765 0.95975 0.95702 1.00665 1.70755 1.35216 1.12672 1.35388 0.83640 0.76240 0.75224 0.75848 1.20841 1.21316 1.21454 1.20832 0.98699 0.91870 0.91602 1.20929 0.93134 0.98494 0.99965 1.21026 0.94692 0.97243 1.01743 1.20819 0.98626 0.92957 1.04755 1.20956 0.94543 0.97206 1.01599 1.21060 0.93748 0.97949 1.02458 0.94072 0.94208 0.91548 0.94506 0.94016 0.78839 0.91605 0.86711 0.87420 0.87565 0.87472 0.87267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.84 37.15 0.33 -2.22 16 2 C -0.07 -1.43 2.06 -90.62 -0.19 -1.62 16 3 H 0.06 1.38 7.59 -51.93 -0.39 0.98 16 4 C 0.08 1.38 6.27 37.16 0.23 1.61 16 5 O -0.58 -9.56 13.19 -35.23 -0.46 -10.03 16 6 C 0.07 1.55 1.18 -92.92 -0.11 1.44 16 7 H 0.04 1.03 6.80 -51.93 -0.35 0.68 16 8 C -0.58 -15.28 6.55 -34.44 -0.23 -15.51 16 9 H 0.05 1.41 7.78 -52.49 -0.41 1.00 16 10 C 0.02 0.67 5.45 -17.82 -0.10 0.57 16 11 N -0.91 -26.44 13.56 55.43 0.75 -25.69 16 12 Si 1.06 24.71 29.91 -169.99 -5.08 19.62 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 16 C -0.03 -0.65 3.22 -104.62 -0.34 -0.99 16 17 C -0.11 -2.27 8.80 -39.58 -0.35 -2.62 16 18 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 19 C -0.15 -2.71 10.05 -39.58 -0.40 -3.11 16 20 C -0.12 -2.31 10.05 -39.59 -0.40 -2.71 16 21 C -0.13 -2.79 9.04 -39.58 -0.36 -3.15 16 22 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.04 0.74 7.82 -51.93 -0.41 0.33 16 24 H 0.07 1.41 7.19 -51.93 -0.37 1.04 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.76 7.04 -51.93 -0.37 0.40 16 27 H 0.37 4.16 9.12 45.56 0.42 4.57 16 28 H 0.27 7.83 6.12 -40.82 -0.25 7.58 16 29 H 0.11 2.43 7.70 -52.49 -0.40 2.02 16 30 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.11 2.22 7.95 -52.49 -0.42 1.80 16 LS Contribution 275.09 15.07 4.15 4.15 Total: -1.00 -29.85 275.09 -6.81 -36.66 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -3.87 Total: 6.39 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: -2.29 Total: -31.10 kcal Atomic # 7 Polarization: -26.44 SS G_CDS: 0.75 Total: -25.69 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.46 Total: -10.03 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.08 Total: 19.62 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.85 -6.81 -36.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308582624.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.813 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds