Wall clock time and date at job start Mon Mar 30 2020 20:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47848 * 2 1 4 4 C 1.53005 * 109.47097 * 119.99775 * 2 1 3 5 5 O 1.42896 * 109.46827 * 294.99835 * 4 2 1 6 6 C 1.53003 * 109.47322 * 239.99163 * 2 1 3 7 7 H 1.09003 * 109.47264 * 299.90797 * 6 2 1 8 8 C 1.50703 * 109.46775 * 59.90878 * 6 2 1 9 9 H 1.07995 * 120.00088 * 26.24446 * 8 6 2 10 10 C 1.37884 * 119.99757 * 206.25138 * 8 6 2 11 11 N 1.31505 * 120.00009 * 354.23935 * 10 8 6 12 12 Si 1.86797 * 119.99621 * 173.97240 * 10 8 6 13 13 H 1.48499 * 109.47098 * 180.27161 * 12 10 8 14 14 H 1.48509 * 109.47250 * 300.26739 * 12 10 8 15 15 H 1.48495 * 109.47664 * 60.27219 * 12 10 8 16 16 C 1.50698 * 109.47193 * 179.90551 * 6 2 1 17 17 C 1.38237 * 120.00122 * 296.66180 * 16 6 2 18 18 C 1.38239 * 119.99899 * 179.78963 * 17 16 6 19 19 C 1.38237 * 119.99594 * 0.44248 * 18 17 16 20 20 C 1.38231 * 120.00304 * 359.81210 * 19 18 17 21 21 C 1.38232 * 120.00196 * 359.97438 * 20 19 18 22 22 H 1.09001 * 109.47542 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47313 * 300.00441 * 1 2 3 24 24 H 1.09005 * 109.46691 * 60.00490 * 1 2 3 25 25 H 1.08998 * 109.46909 * 54.99452 * 4 2 1 26 26 H 1.09003 * 109.47668 * 174.99857 * 4 2 1 27 27 H 0.96703 * 114.00096 * 179.97438 * 5 4 2 28 28 H 0.97000 * 120.00073 * 354.19110 * 11 10 8 29 29 H 1.07999 * 120.00163 * 359.97438 * 17 16 6 30 30 H 1.07999 * 119.99726 * 180.27017 * 18 17 16 31 31 H 1.08000 * 119.99194 * 179.83319 * 19 18 17 32 32 H 1.07996 * 119.99877 * 180.02562 * 20 19 18 33 33 H 1.08000 * 120.00213 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.6619 0.0169 2.4130 6 6 2.0400 -0.7214 -1.2491 7 1 1.6780 -1.7496 -1.2482 8 6 1.5358 -0.0125 -2.4797 9 1 1.2967 1.0398 -2.4368 10 6 1.3796 -0.7074 -3.6603 11 7 1.7763 -1.9583 -3.7444 12 14 0.5978 0.1260 -5.1380 13 1 0.5398 -0.8305 -6.2725 14 1 -0.7777 0.5639 -4.7891 15 1 1.4095 1.3069 -5.5274 16 6 3.5470 -0.7194 -1.2503 17 6 4.2365 0.4766 -1.3214 18 6 5.6189 0.4787 -1.3180 19 6 6.3117 -0.7158 -1.2528 20 6 5.6221 -1.9120 -1.1871 21 6 4.2398 -1.9139 -1.1860 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.6052 -1.7197 1.2953 26 1 3.1263 -0.7995 1.2057 27 1 1.9525 -0.3831 3.2441 28 1 2.2543 -2.3663 -3.0055 29 1 3.6953 1.4096 -1.3765 30 1 6.1576 1.4134 -1.3691 31 1 7.3916 -0.7142 -1.2529 32 1 6.1634 -2.8451 -1.1357 33 1 3.7011 -2.8485 -1.1342 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308582624.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:53 Heat of formation + Delta-G solvation = -68.939644 kcal Electronic energy + Delta-G solvation = -15161.467363 eV Core-core repulsion = 12764.269055 eV Total energy + Delta-G solvation = -2397.198307 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.41657 -38.31110 -36.43513 -33.97768 -31.75551 -31.61576 -28.04042 -27.25437 -24.98360 -23.35350 -22.34858 -20.81153 -19.00421 -18.11190 -17.52573 -16.45620 -15.85740 -15.68137 -15.62424 -15.08542 -14.59912 -14.31739 -14.05519 -13.80353 -13.40899 -13.19977 -12.74887 -12.61925 -12.47835 -12.00834 -11.93411 -11.68632 -11.59638 -11.29332 -10.88183 -10.64419 -10.49010 -9.67958 -9.27071 -8.51859 -6.24044 0.64063 0.71826 1.53515 1.59996 1.78254 2.58615 3.06290 3.25321 3.46181 4.00278 4.16335 4.16468 4.24340 4.33969 4.41453 4.48106 4.63583 4.76686 4.81573 4.87295 4.96453 5.03745 5.27776 5.33798 5.36773 5.47732 5.54273 5.71244 5.79750 5.93354 6.19006 6.28199 6.34730 6.70987 6.90729 7.52437 8.86558 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.013275 C = 0.009118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.903275 B = 2108.740541 C = 3070.134282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.068 4.068 3 H 0.052 0.948 4 C 0.090 3.910 5 O -0.584 6.584 6 C 0.069 3.931 7 H 0.012 0.988 8 C -0.580 4.580 9 H 0.045 0.955 10 C -0.025 4.025 11 N -0.938 5.938 12 Si 1.102 2.898 13 H -0.288 1.288 14 H -0.271 1.271 15 H -0.276 1.276 16 C -0.050 4.050 17 C -0.130 4.130 18 C -0.127 4.127 19 C -0.146 4.146 20 C -0.124 4.124 21 C -0.153 4.153 22 H 0.038 0.962 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.392 0.608 28 H 0.264 0.736 29 H 0.104 0.896 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.189 2.044 7.901 9.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.087 4.087 3 H 0.070 0.930 4 C 0.012 3.988 5 O -0.391 6.391 6 C 0.050 3.950 7 H 0.030 0.970 8 C -0.618 4.618 9 H 0.063 0.937 10 C -0.224 4.224 11 N -0.575 5.575 12 Si 0.925 3.075 13 H -0.214 1.214 14 H -0.196 1.196 15 H -0.201 1.201 16 C -0.051 4.051 17 C -0.148 4.148 18 C -0.145 4.145 19 C -0.164 4.164 20 C -0.142 4.142 21 C -0.171 4.171 22 H 0.057 0.943 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.241 0.759 28 H 0.075 0.925 29 H 0.122 0.878 30 H 0.157 0.843 31 H 0.165 0.835 32 H 0.156 0.844 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.401 2.169 5.914 7.684 hybrid contribution 0.619 -0.362 1.702 1.847 sum 5.019 1.807 7.616 9.299 Atomic orbital electron populations 1.21527 0.94923 1.00575 1.00690 1.20998 0.96425 0.98756 0.92509 0.92995 1.22163 0.97580 0.93775 0.85236 1.86429 1.81800 1.53883 1.17036 1.17959 0.88154 0.95533 0.93372 0.97013 1.21997 1.46531 0.97231 0.96008 0.93653 1.26938 0.96340 0.95729 1.03373 1.70844 1.37345 1.13814 1.35479 0.83125 0.76569 0.74684 0.73125 1.21410 1.19624 1.20114 1.20644 0.97661 0.93057 0.93714 1.20987 0.94666 0.97594 1.01583 1.21387 0.93618 0.99251 1.00195 1.21293 1.00662 0.91965 1.02465 1.21330 0.93534 0.99190 1.00116 1.21143 0.95217 0.97163 1.03571 0.94299 0.92496 0.93258 0.94001 0.94111 0.75881 0.92536 0.87793 0.84346 0.83545 0.84425 0.88038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.89 8.84 71.98 0.64 -4.25 16 2 C -0.07 -2.88 2.06 -10.79 -0.02 -2.90 16 3 H 0.05 2.29 7.59 -2.39 -0.02 2.27 16 4 C 0.09 3.21 6.27 71.98 0.45 3.66 16 5 O -0.58 -18.30 13.19 -148.98 -1.97 -20.27 16 6 C 0.07 3.33 1.18 -12.28 -0.01 3.31 16 7 H 0.01 0.63 6.80 -2.39 -0.02 0.61 16 8 C -0.58 -31.30 6.55 25.60 0.17 -31.13 16 9 H 0.05 2.46 7.78 -2.91 -0.02 2.43 16 10 C -0.02 -1.38 5.45 84.66 0.46 -0.92 16 11 N -0.94 -56.23 13.56 21.45 0.29 -55.94 16 12 Si 1.10 50.25 29.91 68.60 2.05 52.30 16 13 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 14 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 15 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 16 C -0.05 -2.26 3.22 -19.87 -0.06 -2.32 16 17 C -0.13 -5.46 8.80 22.27 0.20 -5.26 16 18 C -0.13 -4.38 10.05 22.27 0.22 -4.16 16 19 C -0.15 -4.63 10.05 22.27 0.22 -4.41 16 20 C -0.12 -4.27 10.05 22.27 0.22 -4.05 16 21 C -0.15 -6.35 9.04 22.27 0.20 -6.15 16 22 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.06 2.09 7.82 -2.39 -0.02 2.07 16 24 H 0.05 2.13 7.19 -2.38 -0.02 2.11 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.04 1.46 7.04 -2.39 -0.02 1.45 16 27 H 0.39 7.90 9.12 -74.06 -0.68 7.22 16 28 H 0.26 15.77 6.12 -92.71 -0.57 15.20 16 29 H 0.10 4.46 7.70 -2.91 -0.02 4.44 16 30 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 31 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 32 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 33 H 0.10 4.25 7.95 -2.91 -0.02 4.23 16 Total: -1.00 -64.65 275.09 3.68 -60.98 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.61 Total: 21.51 kcal Atomic # 6 Polarization: -61.26 SS G_CDS: 2.68 Total: -58.57 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.29 Total: -55.94 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -1.97 Total: -20.27 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.05 Total: 52.30 kcal Total: -64.65 3.68 -60.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308582624.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.961 kcal (2) G-P(sol) polarization free energy of solvation -64.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds