Wall clock time and date at job start Mon Mar 30 2020 20:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47173 * 2 1 4 4 C 1.52997 * 109.47589 * 120.00355 * 2 1 3 5 5 O 1.42897 * 109.47295 * 185.93755 * 4 2 1 6 6 C 1.53000 * 109.47275 * 240.00589 * 2 1 3 7 7 H 1.09005 * 109.47152 * 294.30419 * 6 2 1 8 8 C 1.50702 * 109.47549 * 174.30401 * 6 2 1 9 9 H 1.07999 * 119.99692 * 334.69685 * 8 6 2 10 10 C 1.37880 * 120.00075 * 154.68983 * 8 6 2 11 11 N 1.31515 * 119.99868 * 354.94991 * 10 8 6 12 12 Si 1.86793 * 119.99755 * 174.94581 * 10 8 6 13 13 H 1.48509 * 109.47157 * 90.00614 * 12 10 8 14 14 H 1.48498 * 109.47153 * 210.00037 * 12 10 8 15 15 H 1.48494 * 109.47525 * 330.00213 * 12 10 8 16 16 C 1.50704 * 109.47396 * 54.30171 * 6 2 1 17 17 C 1.38243 * 119.99558 * 59.72822 * 16 6 2 18 18 C 1.38231 * 119.99810 * 179.80868 * 17 16 6 19 19 C 1.38240 * 120.00133 * 0.40379 * 18 17 16 20 20 C 1.38238 * 119.99750 * 359.85100 * 19 18 17 21 21 C 1.38232 * 120.00337 * 240.00313 * 16 6 2 22 22 H 1.08999 * 109.47446 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47192 * 59.99728 * 1 2 3 24 24 H 1.09003 * 109.47428 * 299.99450 * 1 2 3 25 25 H 1.09002 * 109.46743 * 305.94159 * 4 2 1 26 26 H 1.08999 * 109.46885 * 65.93533 * 4 2 1 27 27 H 0.96707 * 113.99480 * 184.99749 * 5 4 2 28 28 H 0.97005 * 119.99630 * 184.99882 * 11 10 8 29 29 H 1.08002 * 119.99869 * 0.02562 * 17 16 6 30 30 H 1.07993 * 120.00391 * 180.23360 * 18 17 16 31 31 H 1.07994 * 120.00060 * 179.83188 * 19 18 17 32 32 H 1.07998 * 119.99887 * 179.97438 * 20 19 18 33 33 H 1.07996 * 120.00205 * 359.97438 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 3.4622 -0.6018 1.3208 6 6 2.0400 -0.7211 -1.2493 7 1 1.7623 -1.7740 -1.1999 8 6 3.5404 -0.6002 -1.3219 9 1 4.0393 0.2278 -0.8402 10 6 4.2762 -1.5466 -2.0030 11 7 3.6807 -2.6067 -2.5043 12 14 6.1186 -1.3230 -2.2139 13 1 6.8278 -1.9543 -1.0720 14 1 6.5531 -1.9634 -3.4813 15 1 6.4399 0.1261 -2.2560 16 6 1.4258 -0.0967 -2.4757 17 6 1.6355 1.2422 -2.7483 18 6 1.0754 1.8140 -3.8753 19 6 0.2988 1.0490 -4.7254 20 6 0.0848 -0.2887 -4.4500 21 6 0.6482 -0.8615 -3.3250 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 0.5137 0.8900 25 1 1.5925 -0.2726 2.1360 26 1 1.7661 -1.7750 1.1975 27 1 3.8626 -1.1000 2.0466 28 1 4.2071 -3.3076 -2.9198 29 1 2.2397 1.8407 -2.0826 30 1 1.2422 2.8591 -4.0904 31 1 -0.1410 1.4964 -5.6044 32 1 -0.5222 -0.8863 -5.1138 33 1 0.4811 -1.9065 -3.1099 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308582625.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:56 Heat of formation + Delta-G solvation = -39.557655 kcal Electronic energy + Delta-G solvation = -15248.369676 eV Core-core repulsion = 12852.445467 eV Total energy + Delta-G solvation = -2395.924209 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.56787 -36.54109 -34.11893 -32.07237 -29.97990 -29.89166 -26.83741 -25.04361 -23.11375 -21.65923 -20.66139 -18.72058 -16.67718 -16.05928 -15.82943 -14.62051 -14.50046 -13.93194 -13.68721 -13.36476 -12.69415 -12.43299 -12.05993 -11.73898 -11.56241 -11.51820 -11.31068 -10.85342 -10.66400 -10.43085 -10.17213 -10.05823 -9.59330 -9.31995 -9.13518 -8.74771 -8.29717 -7.96263 -7.48464 -5.87843 -3.84283 2.37363 2.44705 3.39709 3.45859 3.50614 4.55927 4.84069 5.13520 5.44050 5.71338 5.72986 5.84533 5.91853 5.95034 6.01387 6.23857 6.26836 6.35686 6.48530 6.53406 6.66169 6.76993 6.87012 7.02135 7.11799 7.18523 7.39300 7.53417 7.64023 8.01802 8.04092 8.13054 8.50055 8.58550 9.18304 9.74399 11.20899 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.020789 B = 0.013667 C = 0.009765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.543081 B = 2048.227702 C = 2866.679178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 H 0.063 0.937 4 C 0.099 3.901 5 O -0.538 6.538 6 C 0.074 3.926 7 H 0.056 0.944 8 C -0.466 4.466 9 H 0.063 0.937 10 C 0.060 3.940 11 N -0.896 5.896 12 Si 0.889 3.111 13 H -0.283 1.283 14 H -0.292 1.292 15 H -0.276 1.276 16 C -0.012 4.012 17 C -0.118 4.118 18 C -0.132 4.132 19 C -0.158 4.158 20 C -0.129 4.129 21 C -0.118 4.118 22 H 0.049 0.951 23 H 0.058 0.942 24 H 0.039 0.961 25 H 0.018 0.982 26 H 0.034 0.966 27 H 0.353 0.647 28 H 0.257 0.743 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.828 3.839 2.862 7.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 H 0.081 0.919 4 C 0.020 3.980 5 O -0.339 6.339 6 C 0.055 3.945 7 H 0.074 0.926 8 C -0.504 4.504 9 H 0.081 0.919 10 C -0.140 4.140 11 N -0.536 5.536 12 Si 0.718 3.282 13 H -0.210 1.210 14 H -0.218 1.218 15 H -0.201 1.201 16 C -0.012 4.012 17 C -0.136 4.136 18 C -0.151 4.151 19 C -0.177 4.177 20 C -0.148 4.148 21 C -0.136 4.136 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.058 0.942 25 H 0.036 0.964 26 H 0.053 0.947 27 H 0.196 0.804 28 H 0.067 0.933 29 H 0.130 0.870 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.897 4.095 2.171 7.500 hybrid contribution 1.197 -0.419 0.154 1.277 sum -4.700 3.675 2.325 6.403 Atomic orbital electron populations 1.21828 0.96523 1.01151 1.00686 1.21246 0.92889 1.00005 0.95913 0.91893 1.21949 0.81931 0.98198 0.95878 1.86900 1.19546 1.73418 1.54071 1.18055 0.95272 0.95667 0.85490 0.92556 1.20919 0.89700 1.09889 1.29871 0.91921 1.24915 0.97930 0.95604 0.95559 1.69922 1.35002 1.08503 1.40165 0.86635 0.86381 0.78174 0.77012 1.20989 1.21783 1.20069 1.20699 0.90103 0.92388 0.98058 1.20952 0.99738 0.95756 0.97158 1.20961 0.99344 0.98830 0.95923 1.20763 1.02254 0.94679 0.99965 1.20974 1.01010 0.94979 0.97795 1.21060 0.98014 0.99488 0.95077 0.93195 0.92344 0.94185 0.96373 0.94727 0.80355 0.93338 0.86996 0.87789 0.87938 0.87803 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.86 37.15 0.33 -2.16 16 2 C -0.08 -1.66 2.07 -90.62 -0.19 -1.84 16 3 H 0.06 1.32 7.58 -51.93 -0.39 0.93 16 4 C 0.10 1.85 6.40 37.16 0.24 2.09 16 5 O -0.54 -10.88 11.14 -35.23 -0.39 -11.27 16 6 C 0.07 1.76 1.55 -92.92 -0.14 1.62 16 7 H 0.06 1.50 7.26 -51.93 -0.38 1.12 16 8 C -0.47 -12.50 6.03 -34.44 -0.21 -12.70 16 9 H 0.06 1.74 7.24 -52.49 -0.38 1.36 16 10 C 0.06 1.68 5.45 -17.82 -0.10 1.58 16 11 N -0.90 -25.89 12.91 55.43 0.72 -25.17 16 12 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 16 C -0.01 -0.27 3.26 -104.62 -0.34 -0.61 16 17 C -0.12 -2.52 8.80 -39.58 -0.35 -2.87 16 18 C -0.13 -2.52 10.05 -39.58 -0.40 -2.91 16 19 C -0.16 -2.90 10.05 -39.58 -0.40 -3.30 16 20 C -0.13 -2.50 10.05 -39.58 -0.40 -2.90 16 21 C -0.12 -2.58 9.67 -39.58 -0.38 -2.97 16 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.06 1.03 7.00 -51.93 -0.36 0.67 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.35 5.42 9.12 45.56 0.42 5.84 16 28 H 0.26 7.19 8.32 -40.82 -0.34 6.85 16 29 H 0.11 2.36 7.64 -52.49 -0.40 1.96 16 30 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 32 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.11 2.48 7.95 -52.49 -0.42 2.06 16 LS Contribution 276.00 15.07 4.16 4.16 Total: -1.00 -29.99 276.00 -6.89 -36.87 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -4.01 Total: 5.30 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: -2.34 Total: -26.97 kcal Atomic # 7 Polarization: -25.89 SS G_CDS: 0.72 Total: -25.17 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.39 Total: -11.27 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.99 -6.89 -36.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308582625.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.687 kcal (2) G-P(sol) polarization free energy of solvation -29.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds