Wall clock time and date at job start Mon Mar 30 2020 20:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46372 * 2 1 4 4 C 1.52995 * 109.47539 * 240.00078 * 2 1 3 5 5 O 1.42905 * 109.47317 * 64.58466 * 4 2 1 6 6 C 1.53000 * 109.47235 * 119.99437 * 2 1 3 7 7 H 1.08999 * 109.46476 * 59.99177 * 6 2 1 8 8 C 1.50695 * 109.47302 * 179.97438 * 6 2 1 9 9 H 1.08005 * 119.99862 * 55.05362 * 8 6 2 10 10 C 1.37874 * 120.00260 * 235.32822 * 8 6 2 11 11 N 1.31517 * 119.99817 * 173.66078 * 10 8 6 12 12 Si 1.86797 * 119.99868 * 353.66931 * 10 8 6 13 13 H 1.48501 * 109.47306 * 86.25776 * 12 10 8 14 14 H 1.48504 * 109.47163 * 206.25741 * 12 10 8 15 15 H 1.48496 * 109.47117 * 326.25596 * 12 10 8 16 16 C 1.50702 * 109.47327 * 299.99456 * 6 2 1 17 17 C 1.38234 * 119.99625 * 299.72309 * 16 6 2 18 18 C 1.38237 * 119.99451 * 179.78654 * 17 16 6 19 19 C 1.38234 * 120.00170 * 0.44679 * 18 17 16 20 20 C 1.38237 * 119.99969 * 359.80609 * 19 18 17 21 21 C 1.38228 * 119.99797 * 359.97438 * 20 19 18 22 22 H 1.08995 * 109.47556 * 299.99923 * 1 2 3 23 23 H 1.08999 * 109.47222 * 60.00768 * 1 2 3 24 24 H 1.09003 * 109.46372 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47525 * 184.58835 * 4 2 1 26 26 H 1.08999 * 109.47062 * 304.58948 * 4 2 1 27 27 H 0.96693 * 114.00259 * 184.95674 * 5 4 2 28 28 H 0.96999 * 119.99542 * 180.02562 * 11 10 8 29 29 H 1.08001 * 120.00599 * 0.02562 * 17 16 6 30 30 H 1.08004 * 119.99884 * 180.27495 * 18 17 16 31 31 H 1.08002 * 119.99936 * 179.83575 * 19 18 17 32 32 H 1.07998 * 119.99723 * 180.02562 * 20 19 18 33 33 H 1.08002 * 119.99925 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 1.6538 0.0117 -2.4135 6 6 2.0401 -0.7211 1.2493 7 1 1.6766 -1.7487 1.2494 8 6 3.5470 -0.7217 1.2490 9 1 4.0874 0.2100 1.1680 10 6 4.2360 -1.9119 1.3464 11 7 5.5451 -1.9261 1.2211 12 14 3.3101 -3.5044 1.6561 13 1 2.8521 -4.0705 0.3619 14 1 4.2079 -4.4758 2.3312 15 1 2.1343 -3.2331 2.5215 16 6 1.5379 -0.0105 2.4797 17 6 1.8767 1.3112 2.7012 18 6 1.4124 1.9643 3.8276 19 6 0.6170 1.2929 4.7372 20 6 0.2825 -0.0304 4.5184 21 6 0.7430 -0.6821 3.3897 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 3.1270 -0.7929 -1.2090 26 1 1.6112 -1.7224 -1.2913 27 1 1.8778 -0.4260 -3.2461 28 1 6.0298 -2.7635 1.2892 29 1 2.5009 1.8348 1.9922 30 1 1.6734 2.9983 3.9984 31 1 0.2564 1.8024 5.6186 32 1 -0.3393 -0.5548 5.2289 33 1 0.4820 -1.7161 3.2189 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308582627.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:43:01 Heat of formation + Delta-G solvation = -45.208117 kcal Electronic energy + Delta-G solvation = -15117.677508 eV Core-core repulsion = 12721.508277 eV Total energy + Delta-G solvation = -2396.169231 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.85584 -36.79289 -34.57872 -32.18442 -30.28940 -30.13852 -27.43718 -25.21063 -23.04348 -22.00444 -20.74486 -18.78366 -17.05277 -16.72806 -16.03529 -14.79944 -14.53417 -14.07450 -13.93738 -13.41782 -12.88036 -12.74262 -12.65884 -12.11233 -11.84555 -11.78836 -11.58222 -11.00028 -10.83569 -10.50974 -10.24842 -10.07991 -9.87807 -9.54343 -9.28102 -9.10142 -8.61715 -8.23356 -7.79146 -6.18539 -4.16502 2.09182 2.15571 3.19395 3.30033 3.30838 4.31543 4.52714 4.93441 5.14859 5.51336 5.53571 5.68368 5.73914 5.88947 5.98415 6.05858 6.20815 6.23919 6.32012 6.45393 6.55262 6.62989 6.74451 6.82192 6.88418 7.04589 7.12040 7.16376 7.26990 7.51227 7.65647 7.76514 8.22381 8.41347 8.86978 9.43028 10.93997 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.019834 B = 0.013447 C = 0.009903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.400122 B = 2081.768553 C = 2826.844289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 H 0.069 0.931 4 C 0.083 3.917 5 O -0.583 6.583 6 C 0.048 3.952 7 H 0.043 0.957 8 C -0.502 4.502 9 H 0.078 0.922 10 C 0.075 3.925 11 N -0.893 5.893 12 Si 0.868 3.132 13 H -0.275 1.275 14 H -0.288 1.288 15 H -0.262 1.262 16 C -0.025 4.025 17 C -0.108 4.108 18 C -0.125 4.125 19 C -0.151 4.151 20 C -0.124 4.124 21 C -0.137 4.137 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.029 0.971 27 H 0.367 0.633 28 H 0.265 0.735 29 H 0.118 0.882 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.019 2.141 0.451 9.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 H 0.087 0.913 4 C 0.006 3.994 5 O -0.387 6.387 6 C 0.029 3.971 7 H 0.061 0.939 8 C -0.540 4.540 9 H 0.096 0.904 10 C -0.128 4.128 11 N -0.530 5.530 12 Si 0.696 3.304 13 H -0.201 1.201 14 H -0.214 1.214 15 H -0.187 1.187 16 C -0.026 4.026 17 C -0.126 4.126 18 C -0.143 4.143 19 C -0.169 4.169 20 C -0.142 4.142 21 C -0.155 4.155 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.047 0.953 27 H 0.212 0.788 28 H 0.075 0.925 29 H 0.136 0.864 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.049 2.432 0.918 9.415 hybrid contribution -0.046 -1.452 -0.042 1.454 sum -9.095 0.979 0.877 9.189 Atomic orbital electron populations 1.21851 0.96911 1.00609 1.00763 1.21151 0.93592 1.00327 0.93972 0.91297 1.22313 1.00189 0.92727 0.84137 1.86421 1.85182 1.50866 1.16275 1.18361 0.96798 0.94381 0.87594 0.93928 1.20878 0.87738 0.95123 1.50224 0.90364 1.25060 0.94729 0.98671 0.94311 1.69892 1.06675 1.27210 1.49240 0.86987 0.80366 0.83885 0.79201 1.20106 1.21420 1.18708 1.20480 0.91413 0.93462 0.97209 1.20968 0.99368 0.94920 0.97330 1.21048 0.98756 0.99305 0.95199 1.20855 1.01314 0.95100 0.99628 1.20958 1.00753 0.94971 0.97566 1.21074 0.99556 0.99559 0.95340 0.93183 0.93192 0.93894 0.91144 0.95271 0.78778 0.92487 0.86359 0.87174 0.87403 0.87351 0.87201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 8.84 37.16 0.33 -2.27 16 2 C -0.07 -1.46 2.03 -90.62 -0.18 -1.64 16 3 H 0.07 1.46 7.40 -51.93 -0.38 1.08 16 4 C 0.08 1.65 6.27 37.15 0.23 1.88 16 5 O -0.58 -10.32 13.18 -35.23 -0.46 -10.78 16 6 C 0.05 1.07 1.48 -92.92 -0.14 0.93 16 7 H 0.04 0.97 4.56 -51.93 -0.24 0.74 16 8 C -0.50 -13.20 7.13 -34.44 -0.25 -13.45 16 9 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 10 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 11 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 12 Si 0.87 20.70 26.95 -169.99 -4.58 16.12 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 15 H -0.26 -6.01 6.60 56.52 0.37 -5.64 16 16 C -0.03 -0.53 3.51 -104.62 -0.37 -0.90 16 17 C -0.11 -2.14 8.82 -39.58 -0.35 -2.49 16 18 C -0.12 -2.17 10.05 -39.58 -0.40 -2.56 16 19 C -0.15 -2.47 10.05 -39.58 -0.40 -2.87 16 20 C -0.12 -2.13 10.05 -39.59 -0.40 -2.53 16 21 C -0.14 -2.69 9.67 -39.59 -0.38 -3.07 16 22 H 0.05 0.88 7.22 -51.93 -0.37 0.51 16 23 H 0.05 0.86 7.81 -51.93 -0.41 0.45 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.07 1.56 7.06 -51.93 -0.37 1.19 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.37 4.69 9.12 45.56 0.42 5.11 16 28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.12 2.36 7.59 -52.49 -0.40 1.96 16 30 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 31 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.11 2.09 7.75 -52.49 -0.41 1.69 16 LS Contribution 273.60 15.07 4.12 4.12 Total: -1.00 -29.31 273.60 -6.40 -35.71 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -3.86 Total: 7.21 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: -2.40 Total: -27.01 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 0.77 Total: -25.37 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -0.46 Total: -10.78 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.58 Total: 16.12 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.31 -6.40 -35.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308582627.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.494 kcal (2) G-P(sol) polarization free energy of solvation -29.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds