Wall clock time and date at job start Mon Mar 30 2020 20:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46892 * 111.00234 * 2 1 4 4 C 1.46899 * 110.99572 * 123.95432 * 2 1 3 5 5 H 1.09006 * 109.46940 * 203.97671 * 4 2 1 6 6 C 1.52998 * 109.47267 * 323.98141 * 4 2 1 7 7 C 1.50700 * 109.46855 * 290.11748 * 6 4 2 8 8 H 1.07998 * 120.00553 * 355.03121 * 7 6 4 9 9 C 1.37883 * 119.99710 * 175.02693 * 7 6 4 10 10 N 1.31506 * 119.99970 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99802 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47318 * 0.02562 * 11 9 7 13 13 H 1.48494 * 109.47040 * 120.00119 * 11 9 7 14 14 H 1.48500 * 109.47171 * 240.00420 * 11 9 7 15 15 C 1.50706 * 109.47501 * 83.98222 * 4 2 1 16 16 C 1.38647 * 120.78428 * 331.30046 * 15 4 2 17 17 C 1.38208 * 119.15847 * 179.75456 * 16 15 4 18 18 N 1.31866 * 120.76407 * 0.52947 * 17 16 15 19 19 C 1.31873 * 121.72730 * 359.73942 * 18 17 16 20 20 C 1.38203 * 120.75991 * 359.97438 * 19 18 17 21 21 H 1.09001 * 109.47099 * 70.64240 * 1 2 3 22 22 H 1.09003 * 109.47388 * 310.64632 * 1 2 3 23 23 H 1.09000 * 109.47314 * 190.64300 * 1 2 3 24 24 H 1.09000 * 109.47440 * 50.71264 * 3 2 1 25 25 H 1.08998 * 109.47136 * 170.71169 * 3 2 1 26 26 H 1.09004 * 109.47292 * 290.71093 * 3 2 1 27 27 H 1.08992 * 109.47569 * 50.11994 * 6 4 2 28 28 H 1.09004 * 109.47429 * 170.12064 * 6 4 2 29 29 H 0.96999 * 120.00016 * 180.02562 * 10 9 7 30 30 H 1.07997 * 120.42370 * 359.97438 * 16 15 4 31 31 H 1.08003 * 119.61942 * 180.24722 * 17 16 15 32 32 H 1.07994 * 119.61975 * 180.02562 * 19 18 17 33 33 H 1.08004 * 120.41575 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9953 -0.7660 1.1376 5 1 3.0022 -0.4211 1.3731 6 6 1.0888 -0.5618 2.3531 7 6 1.2356 0.8506 2.8575 8 1 1.9659 1.5100 2.4123 9 6 0.4373 1.3012 3.8875 10 7 -0.4517 0.4983 4.4300 11 14 0.6187 3.0523 4.5123 12 1 1.6808 3.7459 3.7402 13 1 -0.6677 3.7742 4.3424 14 1 0.9870 3.0289 5.9508 15 6 2.0363 -2.2299 0.7818 16 6 1.1374 -2.7643 -0.1287 17 6 1.2085 -4.1103 -0.4343 18 7 2.1102 -4.8849 0.1366 19 6 2.9770 -4.4121 1.0107 20 6 2.9700 -3.0753 1.3611 21 1 -0.3633 0.3406 -0.9696 22 1 -0.3634 0.6694 0.7797 23 1 -0.3634 -1.0100 0.1898 24 1 1.5182 1.9438 0.7954 25 1 3.0724 1.3470 0.1659 26 1 1.7864 1.8408 -0.9613 27 1 0.0522 -0.7397 2.0673 28 1 1.3735 -1.2601 3.1402 29 1 -1.0136 0.8154 5.1543 30 1 0.3935 -2.1360 -0.5958 31 1 0.5146 -4.5335 -1.1455 32 1 3.7013 -5.0772 1.4573 33 1 3.6823 -2.6941 2.0780 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259239708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:29 Heat of formation + Delta-G solvation = 45.486205 kcal Electronic energy + Delta-G solvation = -15087.666448 eV Core-core repulsion = 12727.722769 eV Total energy + Delta-G solvation = -2359.943679 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.87282 -37.47568 -32.83091 -32.36818 -30.77554 -29.02439 -27.09405 -25.96913 -22.95041 -22.45454 -22.32881 -19.37131 -16.77247 -16.01589 -15.89603 -15.29338 -14.78079 -14.42470 -13.89480 -13.80292 -13.39225 -12.98160 -12.48582 -12.17901 -11.60989 -11.55695 -11.15331 -10.96764 -10.90779 -10.74792 -10.57873 -10.22156 -10.08136 -9.32166 -8.93105 -8.82649 -8.68944 -8.50349 -7.44632 -6.14482 -4.17653 1.59548 1.79676 3.20466 3.29391 3.31348 4.26684 4.33822 4.68927 4.83667 5.20545 5.28921 5.39051 5.62608 5.65802 5.82646 5.90175 6.08957 6.20780 6.22313 6.30903 6.35039 6.51481 6.59585 6.70740 6.83502 6.92499 7.17269 7.33885 7.47415 7.71602 7.86221 7.89340 8.20918 8.37295 8.87231 9.46188 10.96106 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.036480 B = 0.008359 C = 0.007671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.360241 B = 3348.898802 C = 3649.157474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.533 5.533 3 C 0.021 3.979 4 C 0.112 3.888 5 H 0.079 0.921 6 C 0.003 3.997 7 C -0.525 4.525 8 H 0.063 0.937 9 C 0.061 3.939 10 N -0.889 5.889 11 Si 0.889 3.111 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.283 1.283 15 C -0.004 4.004 16 C -0.164 4.164 17 C 0.086 3.914 18 N -0.503 5.503 19 C 0.089 3.911 20 C -0.174 4.174 21 H 0.049 0.951 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.035 0.965 28 H 0.016 0.984 29 H 0.261 0.739 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.504 -3.110 -7.420 8.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.256 5.256 3 C -0.127 4.127 4 C 0.004 3.996 5 H 0.097 0.903 6 C -0.035 4.035 7 C -0.563 4.563 8 H 0.081 0.919 9 C -0.141 4.141 10 N -0.527 5.527 11 Si 0.716 3.284 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.209 1.209 15 C -0.013 4.013 16 C -0.183 4.183 17 C -0.070 4.070 18 N -0.213 5.213 19 C -0.067 4.067 20 C -0.194 4.194 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.161 0.839 31 H 0.164 0.836 32 H 0.165 0.835 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.551 -4.221 -7.936 9.665 hybrid contribution -0.278 2.252 1.520 2.731 sum 3.273 -1.968 -6.417 7.468 Atomic orbital electron populations 1.22588 0.88298 1.02079 1.00318 1.62304 1.08009 1.13723 1.41548 1.22536 0.99544 0.89886 1.00758 1.20923 1.00258 0.87048 0.91371 0.90299 1.19773 0.95302 0.97348 0.91099 1.21297 1.20014 0.97255 1.17688 0.91871 1.25001 0.95229 0.97442 0.96440 1.69969 1.22127 1.35467 1.25166 0.86588 0.78014 0.84855 0.78912 1.19665 1.20969 1.20929 1.20591 0.91949 0.96805 0.91937 1.22318 1.00680 0.96194 0.99151 1.22651 0.95880 0.90801 0.97714 1.67569 1.04791 1.39586 1.09325 1.22550 0.96440 0.93381 0.94355 1.21973 1.00679 0.94888 1.01851 0.93255 0.92591 0.91643 0.92268 0.92772 0.93182 0.94657 0.96550 0.92907 0.83947 0.83553 0.83483 0.85225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 7.26 60.06 0.44 0.71 16 2 N -0.53 -9.92 4.46 -244.59 -1.09 -11.01 16 3 C 0.02 0.37 8.72 60.06 0.52 0.90 16 4 C 0.11 2.25 2.16 -68.86 -0.15 2.10 16 5 H 0.08 1.59 7.47 -51.93 -0.39 1.20 16 6 C 0.00 0.07 3.93 -27.88 -0.11 -0.04 16 7 C -0.52 -13.57 7.04 -34.44 -0.24 -13.81 16 8 H 0.06 1.58 5.58 -52.49 -0.29 1.29 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 11 Si 0.89 20.68 29.54 -169.99 -5.02 15.65 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.00 -0.08 5.04 -104.32 -0.53 -0.60 16 16 C -0.16 -2.79 8.78 -39.44 -0.35 -3.13 16 17 C 0.09 1.36 11.18 -17.55 -0.20 1.16 16 18 N -0.50 -8.46 10.36 -13.25 -0.14 -8.59 16 19 C 0.09 1.40 11.18 -17.55 -0.20 1.21 16 20 C -0.17 -2.91 9.82 -39.44 -0.39 -3.30 16 21 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 22 H 0.06 1.19 6.41 -51.93 -0.33 0.86 16 23 H 0.07 1.18 4.76 -51.93 -0.25 0.93 16 24 H 0.06 1.18 5.41 -51.93 -0.28 0.90 16 25 H 0.05 0.91 7.70 -51.93 -0.40 0.51 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.91 5.71 -51.93 -0.30 0.61 16 28 H 0.02 0.43 8.11 -51.93 -0.42 0.01 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.14 2.31 4.85 -52.49 -0.25 2.05 16 31 H 0.15 1.86 8.06 -52.48 -0.42 1.44 16 32 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.13 1.98 8.06 -52.48 -0.42 1.55 16 LS Contribution 264.33 15.07 3.98 3.98 Total: -1.00 -28.89 264.33 -6.98 -35.88 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -4.16 Total: 2.10 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -1.29 Total: -13.26 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: -0.49 Total: -44.36 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.89 -6.98 -35.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259239708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.363 kcal (2) G-P(sol) polarization free energy of solvation -28.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds