Wall clock time and date at job start Mon Mar 30 2020 20:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46892 * 111.00234 * 2 1 4 4 C 1.46899 * 110.99572 * 123.95432 * 2 1 3 5 5 H 1.09006 * 109.46940 * 203.97671 * 4 2 1 6 6 C 1.52998 * 109.47267 * 323.98141 * 4 2 1 7 7 C 1.50700 * 109.46855 * 290.11748 * 6 4 2 8 8 H 1.07998 * 120.00553 * 355.03121 * 7 6 4 9 9 C 1.37883 * 119.99710 * 175.02693 * 7 6 4 10 10 N 1.31506 * 119.99970 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99802 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47318 * 0.02562 * 11 9 7 13 13 H 1.48494 * 109.47040 * 120.00119 * 11 9 7 14 14 H 1.48500 * 109.47171 * 240.00420 * 11 9 7 15 15 C 1.50706 * 109.47501 * 83.98222 * 4 2 1 16 16 C 1.38647 * 120.78428 * 331.30046 * 15 4 2 17 17 C 1.38208 * 119.15847 * 179.75456 * 16 15 4 18 18 N 1.31866 * 120.76407 * 0.52947 * 17 16 15 19 19 C 1.31873 * 121.72730 * 359.73942 * 18 17 16 20 20 C 1.38203 * 120.75991 * 359.97438 * 19 18 17 21 21 H 1.09001 * 109.47099 * 70.64240 * 1 2 3 22 22 H 1.09003 * 109.47388 * 310.64632 * 1 2 3 23 23 H 1.09000 * 109.47314 * 190.64300 * 1 2 3 24 24 H 1.09000 * 109.47440 * 50.71264 * 3 2 1 25 25 H 1.08998 * 109.47136 * 170.71169 * 3 2 1 26 26 H 1.09004 * 109.47292 * 290.71093 * 3 2 1 27 27 H 1.08992 * 109.47569 * 50.11994 * 6 4 2 28 28 H 1.09004 * 109.47429 * 170.12064 * 6 4 2 29 29 H 0.96999 * 120.00016 * 180.02562 * 10 9 7 30 30 H 1.07997 * 120.42370 * 359.97438 * 16 15 4 31 31 H 1.08003 * 119.61942 * 180.24722 * 17 16 15 32 32 H 1.07994 * 119.61975 * 180.02562 * 19 18 17 33 33 H 1.08004 * 120.41575 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9953 -0.7660 1.1376 5 1 3.0022 -0.4211 1.3731 6 6 1.0888 -0.5618 2.3531 7 6 1.2356 0.8506 2.8575 8 1 1.9659 1.5100 2.4123 9 6 0.4373 1.3012 3.8875 10 7 -0.4517 0.4983 4.4300 11 14 0.6187 3.0523 4.5123 12 1 1.6808 3.7459 3.7402 13 1 -0.6677 3.7742 4.3424 14 1 0.9870 3.0289 5.9508 15 6 2.0363 -2.2299 0.7818 16 6 1.1374 -2.7643 -0.1287 17 6 1.2085 -4.1103 -0.4343 18 7 2.1102 -4.8849 0.1366 19 6 2.9770 -4.4121 1.0107 20 6 2.9700 -3.0753 1.3611 21 1 -0.3633 0.3406 -0.9696 22 1 -0.3634 0.6694 0.7797 23 1 -0.3634 -1.0100 0.1898 24 1 1.5182 1.9438 0.7954 25 1 3.0724 1.3470 0.1659 26 1 1.7864 1.8408 -0.9613 27 1 0.0522 -0.7397 2.0673 28 1 1.3735 -1.2601 3.1402 29 1 -1.0136 0.8154 5.1543 30 1 0.3935 -2.1360 -0.5958 31 1 0.5146 -4.5335 -1.1455 32 1 3.7013 -5.0772 1.4573 33 1 3.6823 -2.6941 2.0780 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259239708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:29 Heat of formation + Delta-G solvation = 26.884347 kcal Electronic energy + Delta-G solvation = -15088.473085 eV Core-core repulsion = 12727.722769 eV Total energy + Delta-G solvation = -2360.750316 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.21746 -38.99506 -34.84015 -33.76325 -32.04888 -30.81390 -28.57087 -27.70604 -24.47007 -24.07432 -23.69662 -20.92034 -18.68585 -17.42878 -17.37917 -16.71082 -16.52331 -15.94186 -15.44592 -15.26455 -14.71584 -14.43155 -14.25046 -13.80342 -13.28427 -12.95246 -12.91836 -12.67179 -12.54463 -12.35359 -12.16435 -11.92605 -11.84997 -11.17910 -10.62420 -10.28522 -10.26054 -9.94846 -9.04592 -8.21837 -6.30506 0.33417 0.44614 1.35663 1.38207 1.48655 2.36938 2.97724 3.10541 3.24499 3.68417 3.94947 4.03352 4.30137 4.36145 4.42322 4.43422 4.70775 4.77660 4.81276 4.84436 4.98332 5.04207 5.15401 5.18555 5.26343 5.42214 5.47469 5.59331 5.76074 5.90626 6.15440 6.23033 6.30404 6.83014 7.11163 7.37066 8.89507 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.036480 B = 0.008359 C = 0.007671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.360241 B = 3348.898802 C = 3649.157474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.526 5.526 3 C 0.021 3.979 4 C 0.124 3.876 5 H 0.075 0.925 6 C 0.014 3.986 7 C -0.526 4.526 8 H 0.071 0.929 9 C 0.006 3.994 10 N -0.929 5.929 11 Si 0.953 3.047 12 H -0.259 1.259 13 H -0.282 1.282 14 H -0.283 1.283 15 C -0.029 4.029 16 C -0.171 4.171 17 C 0.087 3.913 18 N -0.515 5.515 19 C 0.091 3.909 20 C -0.183 4.183 21 H 0.079 0.921 22 H 0.020 0.980 23 H 0.064 0.936 24 H 0.033 0.967 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.014 0.986 28 H -0.017 1.017 29 H 0.261 0.739 30 H 0.148 0.852 31 H 0.179 0.821 32 H 0.180 0.820 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.278 -3.016 -8.647 10.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.248 5.248 3 C -0.127 4.127 4 C 0.015 3.985 5 H 0.093 0.907 6 C -0.024 4.024 7 C -0.564 4.564 8 H 0.089 0.911 9 C -0.192 4.192 10 N -0.570 5.570 11 Si 0.779 3.221 12 H -0.183 1.183 13 H -0.208 1.208 14 H -0.209 1.209 15 C -0.037 4.037 16 C -0.190 4.190 17 C -0.069 4.069 18 N -0.225 5.225 19 C -0.065 4.065 20 C -0.203 4.203 21 H 0.098 0.902 22 H 0.039 0.961 23 H 0.083 0.917 24 H 0.052 0.948 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.032 0.968 28 H 0.002 0.998 29 H 0.070 0.930 30 H 0.165 0.835 31 H 0.196 0.804 32 H 0.197 0.803 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.340 -4.121 -9.180 10.959 hybrid contribution -0.513 2.166 1.863 2.903 sum 3.828 -1.955 -7.317 8.486 Atomic orbital electron populations 1.22532 0.88046 1.01299 1.00666 1.62417 1.08063 1.14136 1.40202 1.22566 0.99751 0.89050 1.01318 1.20656 0.98840 0.88842 0.90115 0.90691 1.19598 0.95014 0.95813 0.92023 1.21661 1.19447 0.98061 1.17186 0.91116 1.25835 0.95081 1.01385 0.96932 1.70100 1.23381 1.37489 1.26015 0.85569 0.78197 0.80187 0.78184 1.18325 1.20792 1.20924 1.20582 0.93622 0.95991 0.93525 1.22425 1.00528 0.97001 0.99080 1.23128 0.95869 0.90252 0.97637 1.67672 1.05219 1.39885 1.09719 1.23044 0.96492 0.93323 0.93648 1.22175 1.00719 0.95427 1.01983 0.90245 0.96148 0.91741 0.94801 0.91956 0.90482 0.96816 0.99828 0.93013 0.83451 0.80448 0.80316 0.84307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.81 7.26 127.69 0.93 1.74 16 2 N -0.53 -19.06 4.46 -927.74 -4.14 -23.20 16 3 C 0.02 0.72 8.72 127.69 1.11 1.83 16 4 C 0.12 4.97 2.16 44.17 0.10 5.06 16 5 H 0.07 3.01 7.47 -2.38 -0.02 3.00 16 6 C 0.01 0.68 3.93 29.85 0.12 0.80 16 7 C -0.53 -27.59 7.04 25.60 0.18 -27.41 16 8 H 0.07 3.54 5.58 -2.91 -0.02 3.53 16 9 C 0.01 0.32 5.46 84.66 0.46 0.78 16 10 N -0.93 -54.70 13.29 21.45 0.28 -54.42 16 11 Si 0.95 42.71 29.54 68.60 2.03 44.74 16 12 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 14 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 15 C -0.03 -1.04 5.04 -19.67 -0.10 -1.14 16 16 C -0.17 -5.60 8.78 22.36 0.20 -5.40 16 17 C 0.09 2.58 11.18 84.68 0.95 3.53 16 18 N -0.52 -16.19 10.36 -195.84 -2.03 -18.22 16 19 C 0.09 2.68 11.18 84.68 0.95 3.63 16 20 C -0.18 -5.96 9.82 22.36 0.22 -5.74 16 21 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 22 H 0.02 0.87 6.41 -2.39 -0.02 0.85 16 23 H 0.06 2.32 4.76 -2.39 -0.01 2.31 16 24 H 0.03 1.32 5.41 -2.39 -0.01 1.31 16 25 H 0.06 1.99 7.70 -2.39 -0.02 1.97 16 26 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.01 0.73 5.71 -2.39 -0.01 0.72 16 28 H -0.02 -0.92 8.11 -2.38 -0.02 -0.94 16 29 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 30 H 0.15 4.58 4.85 -2.91 -0.01 4.57 16 31 H 0.18 3.99 8.06 -2.91 -0.02 3.97 16 32 H 0.18 3.97 8.06 -2.91 -0.02 3.94 16 33 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -62.06 264.33 2.35 -59.71 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 1.10 Total: 13.70 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: 5.11 Total: -22.32 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -5.89 Total: -95.83 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -62.06 2.35 -59.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259239708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.598 kcal (2) G-P(sol) polarization free energy of solvation -62.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds