Wall clock time and date at job start Mon Mar 30 2020 20:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47426 * 2 1 4 4 N 1.46506 * 109.46992 * 119.99864 * 2 1 3 5 5 N 1.39875 * 125.67912 * 299.69016 * 4 2 1 6 6 C 1.30312 * 109.23464 * 180.26278 * 5 4 2 7 7 C 1.41880 * 108.04783 * 359.97438 * 6 5 4 8 8 C 1.41597 * 126.55915 * 179.97438 * 7 6 5 9 9 H 1.08004 * 119.99840 * 189.54793 * 8 7 6 10 10 C 1.39696 * 119.99673 * 9.55402 * 8 7 6 11 11 N 1.31018 * 120.00207 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99660 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47272 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46950 * 120.00195 * 12 10 8 15 15 H 1.48504 * 109.47270 * 239.99942 * 12 10 8 16 16 C 1.34504 * 125.67587 * 119.99745 * 4 2 1 17 17 C 1.50700 * 126.40368 * 359.72099 * 16 4 2 18 18 C 1.53002 * 117.50262 * 132.59774 * 17 16 4 19 19 C 1.52996 * 117.50484 * 63.93537 * 17 16 4 20 20 H 1.08995 * 109.47108 * 300.00256 * 1 2 3 21 21 H 1.09000 * 109.47191 * 59.99704 * 1 2 3 22 22 H 1.08991 * 109.47196 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47585 * 239.99974 * 2 1 3 24 24 H 1.09000 * 109.47177 * 300.00305 * 3 2 1 25 25 H 1.09003 * 109.46968 * 60.00052 * 3 2 1 26 26 H 1.09000 * 109.47374 * 179.97438 * 3 2 1 27 27 H 1.08002 * 125.97811 * 179.97438 * 6 5 4 28 28 H 0.97004 * 119.99938 * 179.97438 * 11 10 8 29 29 H 1.09003 * 115.55066 * 278.26275 * 17 16 4 30 30 H 1.09009 * 117.49185 * 359.97438 * 18 17 16 31 31 H 1.08992 * 117.49918 * 145.01436 * 18 17 16 32 32 H 1.08995 * 117.50106 * 214.98006 * 19 17 16 33 33 H 1.09004 * 117.49705 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7596 -0.3142 2.5183 6 6 2.3531 -1.1471 3.3258 7 6 3.0314 -2.1139 2.5394 8 6 3.8026 -3.2004 3.0186 9 1 4.3998 -3.7828 2.3326 10 6 3.7908 -3.5191 4.3787 11 7 3.0666 -2.8123 5.2109 12 14 4.8077 -4.9529 5.0108 13 1 5.5313 -5.5841 3.8779 14 1 5.7886 -4.4610 6.0114 15 1 3.9122 -5.9531 5.6456 16 6 2.7948 -1.7888 1.2059 17 6 3.3113 -2.5297 -0.0005 18 6 4.7959 -2.8992 -0.0205 19 6 4.2719 -1.7845 -0.9294 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4424 0.0005 27 1 2.3323 -1.1084 4.4049 28 1 3.0582 -3.0339 6.1553 29 1 2.6121 -3.2304 -0.4568 30 1 5.3991 -2.6060 0.8388 31 1 5.0733 -3.8427 -0.4903 32 1 4.2049 -1.9953 -1.9967 33 1 4.5306 -0.7585 -0.6677 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261025023.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:02 Heat of formation + Delta-G solvation = 84.366846 kcal Electronic energy + Delta-G solvation = -15139.340827 eV Core-core repulsion = 12781.083139 eV Total energy + Delta-G solvation = -2358.257688 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.50411 -36.04138 -34.88884 -33.00727 -28.95852 -28.68518 -26.84079 -24.81735 -22.08901 -21.80131 -21.31627 -19.06199 -17.95998 -16.71501 -15.56068 -14.77269 -14.51264 -13.88410 -13.65099 -13.33719 -12.86503 -12.09581 -11.96006 -11.81291 -11.74696 -11.27814 -11.14680 -10.89121 -10.87090 -10.79618 -10.64233 -10.30429 -10.05671 -9.64610 -9.41605 -9.16079 -8.63514 -7.61511 -7.00876 -6.36548 -3.89199 3.06587 3.24087 3.28676 3.45609 3.89739 4.19180 4.47077 4.54671 5.20180 5.41685 5.49794 5.56920 5.58296 5.67951 5.73969 5.87419 5.95823 6.09666 6.16802 6.17095 6.34847 6.48693 6.56948 6.59050 6.72270 6.89912 7.01354 7.42779 7.69806 7.74368 8.23900 8.65722 8.75470 9.14963 9.25811 9.61383 10.64090 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.032333 B = 0.009940 C = 0.008116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.772948 B = 2816.154659 C = 3449.084848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.170 3.830 3 C -0.155 4.155 4 N -0.379 5.379 5 N -0.333 5.333 6 C 0.027 3.973 7 C -0.007 4.007 8 C -0.431 4.431 9 H 0.073 0.927 10 C 0.065 3.935 11 N -0.843 5.843 12 Si 0.909 3.091 13 H -0.266 1.266 14 H -0.279 1.279 15 H -0.279 1.279 16 C -0.068 4.068 17 C -0.046 4.046 18 C -0.157 4.157 19 C -0.194 4.194 20 H 0.064 0.936 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.085 0.915 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.197 0.803 28 H 0.271 0.729 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.091 2.164 -8.589 8.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.066 3.934 3 C -0.214 4.214 4 N -0.168 5.168 5 N -0.155 5.155 6 C -0.160 4.160 7 C -0.017 4.017 8 C -0.466 4.466 9 H 0.092 0.908 10 C -0.145 4.145 11 N -0.475 5.475 12 Si 0.736 3.264 13 H -0.190 1.190 14 H -0.205 1.205 15 H -0.205 1.205 16 C -0.189 4.189 17 C -0.066 4.066 18 C -0.194 4.194 19 C -0.231 4.231 20 H 0.084 0.916 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.103 0.897 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.213 0.787 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.894 3.226 -8.536 9.169 hybrid contribution 0.920 -1.468 0.426 1.784 sum 0.026 1.758 -8.110 8.298 Atomic orbital electron populations 1.22105 0.95334 1.02112 1.01881 1.20723 0.93964 0.92835 0.85878 1.22102 1.01300 0.96073 1.01883 1.47407 1.42813 1.22999 1.03602 1.76504 1.26195 1.25848 0.86960 1.24864 0.97792 0.93004 1.00293 1.17905 0.99226 0.96515 0.88063 1.18860 1.23875 1.11509 0.92307 0.90840 1.25638 0.94934 0.97038 0.96912 1.69537 1.36160 1.37714 1.04106 0.86247 0.79832 0.81354 0.79016 1.19024 1.20513 1.20529 1.19840 1.08542 0.96260 0.94267 1.19810 0.91849 1.00094 0.94813 1.22838 0.97068 0.97958 1.01564 1.22977 1.06699 0.97611 0.95835 0.91650 0.92377 0.92664 0.89719 0.92371 0.91667 0.92746 0.78691 0.91844 0.89120 0.87928 0.89619 0.89865 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.45 37.16 0.35 -2.13 16 2 C 0.17 3.01 3.63 -67.93 -0.25 2.76 16 3 C -0.16 -2.45 9.44 37.16 0.35 -2.09 16 4 N -0.38 -8.63 3.25 -49.79 -0.16 -8.79 16 5 N -0.33 -8.49 12.30 30.97 0.38 -8.11 16 6 C 0.03 0.74 10.89 -16.80 -0.18 0.56 16 7 C -0.01 -0.20 5.89 -106.84 -0.63 -0.83 16 8 C -0.43 -11.64 8.74 -37.76 -0.33 -11.97 16 9 H 0.07 1.90 6.17 -52.48 -0.32 1.58 16 10 C 0.06 1.69 5.49 -17.35 -0.10 1.60 16 11 N -0.84 -22.60 10.42 55.54 0.58 -22.02 16 12 Si 0.91 19.86 29.56 -169.99 -5.02 14.83 16 13 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 14 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 15 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 16 C -0.07 -1.63 6.50 -81.04 -0.53 -2.16 16 17 C -0.05 -0.91 5.31 -91.77 -0.49 -1.40 16 18 C -0.16 -2.85 8.85 -26.69 -0.24 -3.08 16 19 C -0.19 -3.21 9.56 -26.70 -0.26 -3.47 16 20 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 21 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.08 1.39 6.69 -51.93 -0.35 1.04 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.20 5.46 5.91 -52.49 -0.31 5.15 16 28 H 0.27 6.72 8.30 -40.82 -0.34 6.38 16 29 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 30 H 0.10 2.08 7.42 -51.92 -0.39 1.70 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 276.52 15.07 4.17 4.17 Total: -1.00 -28.85 276.52 -7.08 -35.93 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.73 Total: 6.20 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -2.29 Total: -22.21 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.80 Total: -38.92 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.85 -7.08 -35.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261025023.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.297 kcal (2) G-P(sol) polarization free energy of solvation -28.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds