Wall clock time and date at job start Mon Mar 30 2020 20:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47426 * 2 1 4 4 N 1.46506 * 109.46992 * 119.99864 * 2 1 3 5 5 N 1.39875 * 125.67912 * 299.69016 * 4 2 1 6 6 C 1.30312 * 109.23464 * 180.26278 * 5 4 2 7 7 C 1.41880 * 108.04783 * 359.97438 * 6 5 4 8 8 C 1.41597 * 126.55915 * 179.97438 * 7 6 5 9 9 H 1.08004 * 119.99840 * 189.54793 * 8 7 6 10 10 C 1.39696 * 119.99673 * 9.55402 * 8 7 6 11 11 N 1.31018 * 120.00207 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99660 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47272 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46950 * 120.00195 * 12 10 8 15 15 H 1.48504 * 109.47270 * 239.99942 * 12 10 8 16 16 C 1.34504 * 125.67587 * 119.99745 * 4 2 1 17 17 C 1.50700 * 126.40368 * 359.72099 * 16 4 2 18 18 C 1.53002 * 117.50262 * 132.59774 * 17 16 4 19 19 C 1.52996 * 117.50484 * 63.93537 * 17 16 4 20 20 H 1.08995 * 109.47108 * 300.00256 * 1 2 3 21 21 H 1.09000 * 109.47191 * 59.99704 * 1 2 3 22 22 H 1.08991 * 109.47196 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47585 * 239.99974 * 2 1 3 24 24 H 1.09000 * 109.47177 * 300.00305 * 3 2 1 25 25 H 1.09003 * 109.46968 * 60.00052 * 3 2 1 26 26 H 1.09000 * 109.47374 * 179.97438 * 3 2 1 27 27 H 1.08002 * 125.97811 * 179.97438 * 6 5 4 28 28 H 0.97004 * 119.99938 * 179.97438 * 11 10 8 29 29 H 1.09003 * 115.55066 * 278.26275 * 17 16 4 30 30 H 1.09009 * 117.49185 * 359.97438 * 18 17 16 31 31 H 1.08992 * 117.49918 * 145.01436 * 18 17 16 32 32 H 1.08995 * 117.50106 * 214.98006 * 19 17 16 33 33 H 1.09004 * 117.49705 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7596 -0.3142 2.5183 6 6 2.3531 -1.1471 3.3258 7 6 3.0314 -2.1139 2.5394 8 6 3.8026 -3.2004 3.0186 9 1 4.3998 -3.7828 2.3326 10 6 3.7908 -3.5191 4.3787 11 7 3.0666 -2.8123 5.2109 12 14 4.8077 -4.9529 5.0108 13 1 5.5313 -5.5841 3.8779 14 1 5.7886 -4.4610 6.0114 15 1 3.9122 -5.9531 5.6456 16 6 2.7948 -1.7888 1.2059 17 6 3.3113 -2.5297 -0.0005 18 6 4.7959 -2.8992 -0.0205 19 6 4.2719 -1.7845 -0.9294 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4424 0.0005 27 1 2.3323 -1.1084 4.4049 28 1 3.0582 -3.0339 6.1553 29 1 2.6121 -3.2304 -0.4568 30 1 5.3991 -2.6060 0.8388 31 1 5.0733 -3.8427 -0.4903 32 1 4.2049 -1.9953 -1.9967 33 1 4.5306 -0.7585 -0.6677 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261025023.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:02 Heat of formation + Delta-G solvation = 68.165314 kcal Electronic energy + Delta-G solvation = -15140.043378 eV Core-core repulsion = 12781.083139 eV Total energy + Delta-G solvation = -2358.960239 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.35535 -37.55548 -36.47228 -34.86704 -30.79432 -30.56734 -28.12020 -26.71195 -23.70361 -23.40029 -22.82272 -20.95295 -19.64201 -18.58563 -17.19427 -16.56387 -16.08674 -15.34056 -15.23663 -14.93202 -14.60091 -13.77706 -13.60723 -13.29943 -13.11441 -13.04544 -12.84962 -12.58052 -12.26896 -12.21127 -12.16134 -11.96926 -11.75690 -11.20873 -11.08001 -11.00458 -10.53328 -9.48399 -8.97151 -8.28662 -5.89689 1.30233 1.44832 1.58366 1.60410 2.22624 2.36844 2.46429 3.07841 3.61334 3.81040 3.99675 4.13752 4.18834 4.20604 4.30426 4.57625 4.70585 4.71884 4.82948 4.86979 4.91775 5.02468 5.09645 5.26574 5.28508 5.33185 5.40736 5.49558 5.77327 5.79270 6.21269 6.69154 6.87119 7.21867 7.26234 7.64369 8.73543 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.032333 B = 0.009940 C = 0.008116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.772948 B = 2816.154659 C = 3449.084848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.152 3.848 3 C -0.148 4.148 4 N -0.367 5.367 5 N -0.349 5.349 6 C -0.007 4.007 7 C -0.058 4.058 8 C -0.456 4.456 9 H 0.076 0.924 10 C 0.014 3.986 11 N -0.876 5.876 12 Si 0.980 3.020 13 H -0.258 1.258 14 H -0.276 1.276 15 H -0.276 1.276 16 C -0.048 4.048 17 C -0.076 4.076 18 C -0.159 4.159 19 C -0.157 4.157 20 H 0.045 0.955 21 H 0.103 0.897 22 H 0.043 0.957 23 H 0.108 0.892 24 H 0.103 0.897 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.178 0.822 28 H 0.273 0.727 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.309 1.897 -11.699 11.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.050 3.950 3 C -0.206 4.206 4 N -0.155 5.155 5 N -0.173 5.173 6 C -0.191 4.191 7 C -0.068 4.068 8 C -0.490 4.490 9 H 0.095 0.905 10 C -0.192 4.192 11 N -0.510 5.510 12 Si 0.803 3.197 13 H -0.182 1.182 14 H -0.201 1.201 15 H -0.202 1.202 16 C -0.173 4.173 17 C -0.096 4.096 18 C -0.197 4.197 19 C -0.194 4.194 20 H 0.064 0.936 21 H 0.122 0.878 22 H 0.062 0.938 23 H 0.126 0.874 24 H 0.121 0.879 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.194 0.806 28 H 0.083 0.917 29 H 0.125 0.875 30 H 0.092 0.908 31 H 0.132 0.868 32 H 0.144 0.856 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.509 2.989 -11.654 12.042 hybrid contribution 0.724 -1.268 1.196 1.887 sum 0.215 1.722 -10.459 10.602 Atomic orbital electron populations 1.22056 0.93683 1.01800 1.03170 1.21337 0.95407 0.93903 0.84343 1.22047 1.00675 0.94689 1.03148 1.47983 1.41026 1.22377 1.04159 1.76410 1.26722 1.25953 0.88233 1.24638 0.99932 0.94514 1.00029 1.18328 1.01151 0.97588 0.89750 1.19085 1.24695 1.12111 0.93136 0.90546 1.26494 0.96077 0.99681 0.96929 1.69667 1.37634 1.39307 1.04363 0.85170 0.78158 0.77923 0.78428 1.18165 1.20103 1.20197 1.20542 1.06205 0.95536 0.95002 1.19950 0.93123 1.01786 0.94709 1.22857 0.95151 1.00181 1.01505 1.23036 1.02451 0.96503 0.97387 0.93607 0.87824 0.93781 0.87381 0.87858 0.93633 0.93642 0.80582 0.91657 0.87531 0.90840 0.86796 0.85610 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 9.45 71.98 0.68 -3.67 16 2 C 0.15 4.98 3.63 44.99 0.16 5.14 16 3 C -0.15 -4.24 9.44 71.98 0.68 -3.56 16 4 N -0.37 -16.60 3.25 -311.43 -1.01 -17.61 16 5 N -0.35 -18.37 12.30 -55.94 -0.69 -19.06 16 6 C -0.01 -0.40 10.89 85.82 0.93 0.53 16 7 C -0.06 -3.28 5.89 -21.30 -0.13 -3.41 16 8 C -0.46 -25.43 8.74 23.45 0.20 -25.22 16 9 H 0.08 4.04 6.17 -2.91 -0.02 4.02 16 10 C 0.01 0.76 5.49 85.17 0.47 1.23 16 11 N -0.88 -49.39 10.42 21.79 0.23 -49.16 16 12 Si 0.98 41.68 29.56 68.60 2.03 43.71 16 13 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 14 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 15 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 16 C -0.05 -2.31 6.50 42.40 0.28 -2.03 16 17 C -0.08 -2.84 5.31 -11.54 -0.06 -2.90 16 18 C -0.16 -5.42 8.85 30.62 0.27 -5.15 16 19 C -0.16 -4.56 9.56 30.62 0.29 -4.26 16 20 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 22 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.11 3.08 6.69 -2.39 -0.02 3.07 16 24 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.18 10.66 5.91 -2.91 -0.02 10.65 16 28 H 0.27 14.22 8.30 -92.71 -0.77 13.45 16 29 H 0.11 3.69 8.14 -2.39 -0.02 3.68 16 30 H 0.07 2.95 7.42 -2.38 -0.02 2.94 16 31 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 32 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 Total: -1.00 -66.29 276.52 5.42 -60.86 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 1.09 Total: 24.56 kcal Atomic # 6 Polarization: -47.09 SS G_CDS: 3.78 Total: -43.30 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -1.47 Total: -85.83 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -66.29 5.42 -60.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261025023.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.026 kcal (2) G-P(sol) polarization free energy of solvation -66.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds