Wall clock time and date at job start Mon Mar 30 2020 20:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 N 1.28457 * 124.85246 * 59.69661 * 4 2 1 6 6 C 1.32783 * 109.92163 * 179.85244 * 5 4 2 7 7 C 1.41424 * 126.62434 * 180.12679 * 6 5 4 8 8 H 1.08003 * 120.00155 * 180.31774 * 7 6 5 9 9 C 1.39843 * 120.00110 * 0.31218 * 7 6 5 10 10 N 1.30900 * 120.00106 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00383 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47155 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47531 * 119.99791 * 11 9 7 14 14 H 1.48507 * 109.47331 * 240.00178 * 11 9 7 15 15 C 1.42129 * 106.75432 * 0.38854 * 6 5 4 16 16 C 1.34755 * 105.82905 * 359.78068 * 15 6 5 17 17 C 1.51265 * 110.18605 * 179.97438 * 16 15 6 18 18 C 1.54485 * 105.03595 * 16.83274 * 17 16 15 19 19 C 1.50963 * 143.59207 * 179.78729 * 15 6 5 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 0.97000 * 119.99863 * 180.02562 * 10 9 7 28 28 H 1.08998 * 110.32855 * 135.72421 * 17 16 15 29 29 H 1.09005 * 110.32920 * 257.84042 * 17 16 15 30 30 H 1.08999 * 110.93727 * 92.66150 * 18 17 16 31 31 H 1.08993 * 110.93717 * 216.34698 * 18 17 16 32 32 H 1.09006 * 110.34605 * 44.37153 * 19 15 6 33 33 H 1.09002 * 110.43098 * 282.15719 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 7 1.7615 -0.3372 -2.4041 6 6 2.3546 -1.1672 -3.2541 7 6 2.3084 -1.1038 -4.6662 8 1 2.8297 -1.8422 -5.2573 9 6 1.5876 -0.0851 -5.2972 10 7 0.9560 0.8102 -4.5809 11 14 1.5259 -0.0017 -7.1623 12 1 2.3168 -1.1209 -7.7342 13 1 0.1161 -0.1085 -7.6163 14 1 2.0965 1.2910 -7.6192 15 6 3.0397 -2.1353 -2.4709 16 6 2.8044 -1.8023 -1.1865 17 6 3.4944 -2.7783 -0.2594 18 6 4.5352 -3.5022 -1.1422 19 6 3.9106 -3.3659 -2.5490 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 0.4557 1.5166 -5.0186 28 1 3.9909 -2.2444 0.5509 29 1 2.7750 -3.4916 0.1429 30 1 5.5020 -3.0011 -1.0948 31 1 4.6267 -4.5500 -0.8566 32 1 4.6908 -3.2312 -3.2983 33 1 3.3085 -4.2438 -2.7834 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261091635.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:16 Heat of formation + Delta-G solvation = 70.047456 kcal Electronic energy + Delta-G solvation = -15194.087866 eV Core-core repulsion = 12835.209242 eV Total energy + Delta-G solvation = -2358.878623 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.71128 -35.98890 -34.46165 -32.78279 -29.35667 -27.15363 -26.74732 -26.63181 -25.30083 -21.17976 -20.73969 -18.54881 -18.38029 -16.19830 -15.54433 -15.05908 -14.43803 -13.86868 -13.77119 -12.92861 -12.46157 -12.13914 -12.07586 -11.86381 -11.76464 -11.63771 -11.06257 -10.94503 -10.79959 -10.69117 -10.53140 -10.32755 -10.29495 -10.11590 -9.59317 -9.05280 -8.25480 -7.23569 -6.94856 -6.16674 -3.99158 3.20900 3.30719 3.35944 3.53552 3.95530 4.29864 4.50236 5.15652 5.29638 5.47016 5.50552 5.56508 5.59288 5.84314 5.96839 5.97328 6.10952 6.14427 6.24926 6.29263 6.31219 6.40139 6.59321 6.72926 6.73243 6.85725 6.90576 7.39407 7.58956 7.63171 8.05930 8.52121 8.84438 9.15198 9.41909 10.45997 10.81986 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.024086 B = 0.011529 C = 0.008276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.244429 B = 2428.080581 C = 3382.320468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.162 3.838 3 C -0.155 4.155 4 N -0.309 5.309 5 N -0.312 5.312 6 C 0.210 3.790 7 C -0.446 4.446 8 H 0.076 0.924 9 C 0.072 3.928 10 N -0.785 5.785 11 Si 0.900 3.100 12 H -0.265 1.265 13 H -0.280 1.280 14 H -0.280 1.280 15 C -0.272 4.272 16 C -0.056 4.056 17 C -0.026 4.026 18 C -0.114 4.114 19 C -0.028 4.028 20 H 0.076 0.924 21 H 0.058 0.942 22 H 0.052 0.948 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.264 0.736 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.277 -2.963 8.184 8.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.059 3.941 3 C -0.213 4.213 4 N -0.093 5.093 5 N -0.143 5.143 6 C 0.061 3.939 7 C -0.485 4.485 8 H 0.094 0.906 9 C -0.145 4.145 10 N -0.415 5.415 11 Si 0.726 3.274 12 H -0.189 1.189 13 H -0.206 1.206 14 H -0.206 1.206 15 C -0.285 4.285 16 C -0.182 4.182 17 C -0.066 4.066 18 C -0.152 4.152 19 C -0.067 4.067 20 H 0.095 0.905 21 H 0.077 0.923 22 H 0.071 0.929 23 H 0.096 0.904 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.386 -1.711 8.427 8.710 hybrid contribution 0.357 -0.535 -0.890 1.098 sum 1.743 -2.247 7.536 8.055 Atomic orbital electron populations 1.22063 0.94527 1.02098 1.02613 1.20892 0.94831 0.93344 0.85029 1.22059 1.01044 0.95578 1.02606 1.45117 1.38702 1.19714 1.05791 1.74773 1.27998 1.25745 0.85748 1.18759 0.92715 0.88957 0.93483 1.18537 1.30045 1.11380 0.88560 0.90621 1.25706 0.94574 0.95096 0.99096 1.69981 1.24646 1.11168 1.35689 0.86410 0.78182 0.78503 0.84331 1.18946 1.20562 1.20566 1.21007 1.11146 1.02556 0.93763 1.21771 1.03758 0.94697 0.97958 1.20317 0.96143 0.94525 0.95591 1.22349 0.97819 0.99038 0.96024 1.20031 0.96595 0.94875 0.95192 0.90520 0.92318 0.92931 0.90401 0.92322 0.92924 0.90526 0.92527 0.92814 0.91894 0.91710 0.91663 0.92697 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.36 37.16 0.35 -2.36 16 2 C 0.16 3.05 3.60 -67.94 -0.24 2.80 16 3 C -0.15 -2.71 9.37 37.15 0.35 -2.36 16 4 N -0.31 -7.44 3.07 -50.36 -0.15 -7.59 16 5 N -0.31 -8.85 9.90 32.32 0.32 -8.53 16 6 C 0.21 6.14 6.78 -84.75 -0.57 5.56 16 7 C -0.45 -13.07 9.42 -37.77 -0.36 -13.43 16 8 H 0.08 2.12 7.84 -52.48 -0.41 1.71 16 9 C 0.07 2.03 5.49 -17.35 -0.10 1.93 16 10 N -0.79 -22.88 11.98 55.54 0.67 -22.21 16 11 Si 0.90 20.72 29.56 -169.99 -5.02 15.70 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 C -0.27 -6.87 6.99 -104.24 -0.73 -7.60 16 16 C -0.06 -1.28 7.52 -81.63 -0.61 -1.90 16 17 C -0.03 -0.46 6.78 -26.83 -0.18 -0.64 16 18 C -0.11 -1.83 7.14 -25.15 -0.18 -2.01 16 19 C -0.03 -0.57 6.78 -26.95 -0.18 -0.75 16 20 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 21 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 23 H 0.08 1.25 8.04 -51.93 -0.42 0.84 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 27 H 0.26 7.10 8.30 -40.82 -0.34 6.76 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 276.96 15.07 4.17 4.17 Total: -1.00 -32.59 276.96 -7.52 -40.11 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -5.04 Total: -0.90 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -2.46 Total: -20.75 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.83 Total: -38.33 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.59 -7.52 -40.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261091635.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.160 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds