Wall clock time and date at job start Mon Mar 30 2020 20:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 N 1.28457 * 124.85246 * 59.69661 * 4 2 1 6 6 C 1.32783 * 109.92163 * 179.85244 * 5 4 2 7 7 C 1.41424 * 126.62434 * 180.12679 * 6 5 4 8 8 H 1.08003 * 120.00155 * 180.31774 * 7 6 5 9 9 C 1.39843 * 120.00110 * 0.31218 * 7 6 5 10 10 N 1.30900 * 120.00106 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00383 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47155 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47531 * 119.99791 * 11 9 7 14 14 H 1.48507 * 109.47331 * 240.00178 * 11 9 7 15 15 C 1.42129 * 106.75432 * 0.38854 * 6 5 4 16 16 C 1.34755 * 105.82905 * 359.78068 * 15 6 5 17 17 C 1.51265 * 110.18605 * 179.97438 * 16 15 6 18 18 C 1.54485 * 105.03595 * 16.83274 * 17 16 15 19 19 C 1.50963 * 143.59207 * 179.78729 * 15 6 5 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 0.97000 * 119.99863 * 180.02562 * 10 9 7 28 28 H 1.08998 * 110.32855 * 135.72421 * 17 16 15 29 29 H 1.09005 * 110.32920 * 257.84042 * 17 16 15 30 30 H 1.08999 * 110.93727 * 92.66150 * 18 17 16 31 31 H 1.08993 * 110.93717 * 216.34698 * 18 17 16 32 32 H 1.09006 * 110.34605 * 44.37153 * 19 15 6 33 33 H 1.09002 * 110.43098 * 282.15719 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 7 1.7615 -0.3372 -2.4041 6 6 2.3546 -1.1672 -3.2541 7 6 2.3084 -1.1038 -4.6662 8 1 2.8297 -1.8422 -5.2573 9 6 1.5876 -0.0851 -5.2972 10 7 0.9560 0.8102 -4.5809 11 14 1.5259 -0.0017 -7.1623 12 1 2.3168 -1.1209 -7.7342 13 1 0.1161 -0.1085 -7.6163 14 1 2.0965 1.2910 -7.6192 15 6 3.0397 -2.1353 -2.4709 16 6 2.8044 -1.8023 -1.1865 17 6 3.4944 -2.7783 -0.2594 18 6 4.5352 -3.5022 -1.1422 19 6 3.9106 -3.3659 -2.5490 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 0.4557 1.5166 -5.0186 28 1 3.9909 -2.2444 0.5509 29 1 2.7750 -3.4916 0.1429 30 1 5.5020 -3.0011 -1.0948 31 1 4.6267 -4.5500 -0.8566 32 1 4.6908 -3.2312 -3.2983 33 1 3.3085 -4.2438 -2.7834 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261091635.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:16 Heat of formation + Delta-G solvation = 49.801674 kcal Electronic energy + Delta-G solvation = -15194.965789 eV Core-core repulsion = 12835.209242 eV Total energy + Delta-G solvation = -2359.756546 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.53899 -37.51693 -36.16064 -34.74756 -31.21109 -28.87041 -28.28969 -28.16737 -27.19582 -22.97808 -22.20455 -20.33571 -20.17197 -18.04754 -17.38797 -16.58161 -16.32069 -15.35833 -15.29592 -14.77356 -14.05158 -13.73603 -13.62513 -13.47479 -13.19157 -13.04854 -12.86633 -12.70654 -12.53255 -12.25408 -12.04812 -12.01987 -11.79632 -11.69076 -11.46563 -11.07762 -10.20498 -9.24330 -8.77710 -8.25182 -6.14808 1.37202 1.39486 1.55135 1.77184 2.30785 2.37920 2.43868 3.64487 3.68467 3.84116 4.07125 4.09612 4.17708 4.32077 4.55187 4.67634 4.67908 4.79286 4.83727 4.89007 4.91690 5.01969 5.10330 5.25350 5.27157 5.36240 5.39999 5.50190 5.64062 5.79038 6.12124 6.50500 6.95664 7.06952 7.31785 8.47091 8.75428 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.024086 B = 0.011529 C = 0.008276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.244429 B = 2428.080581 C = 3382.320468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.146 3.854 3 C -0.145 4.145 4 N -0.318 5.318 5 N -0.343 5.343 6 C 0.157 3.843 7 C -0.484 4.484 8 H 0.071 0.929 9 C 0.022 3.978 10 N -0.826 5.826 11 Si 0.980 3.020 12 H -0.258 1.258 13 H -0.272 1.272 14 H -0.272 1.272 15 C -0.318 4.318 16 C -0.050 4.050 17 C -0.022 4.022 18 C -0.099 4.099 19 C -0.031 4.031 20 H 0.035 0.965 21 H 0.105 0.895 22 H 0.045 0.955 23 H 0.118 0.882 24 H 0.105 0.895 25 H 0.046 0.954 26 H 0.035 0.965 27 H 0.268 0.732 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.047 0.953 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.020 -3.959 10.187 11.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.045 3.955 3 C -0.203 4.203 4 N -0.102 5.102 5 N -0.175 5.175 6 C 0.007 3.993 7 C -0.523 4.523 8 H 0.089 0.911 9 C -0.191 4.191 10 N -0.456 5.456 11 Si 0.802 3.198 12 H -0.182 1.182 13 H -0.197 1.197 14 H -0.197 1.197 15 C -0.330 4.330 16 C -0.177 4.177 17 C -0.061 4.061 18 C -0.137 4.137 19 C -0.070 4.070 20 H 0.054 0.946 21 H 0.124 0.876 22 H 0.065 0.935 23 H 0.136 0.864 24 H 0.123 0.877 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.066 0.934 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.133 -2.711 10.448 11.003 hybrid contribution 0.116 -0.228 -1.373 1.396 sum 2.249 -2.938 9.076 9.801 Atomic orbital electron populations 1.21989 0.93756 1.01744 1.02835 1.21452 0.95616 0.94040 0.84377 1.21985 1.00558 0.94942 1.02828 1.45611 1.38403 1.20302 1.05895 1.74622 1.28553 1.26614 0.87664 1.19279 0.94627 0.91124 0.94236 1.18845 1.31478 1.12391 0.89583 0.91102 1.26626 0.93682 0.94221 1.04588 1.70116 1.25620 1.11926 1.37934 0.85199 0.78491 0.78779 0.77343 1.18212 1.19679 1.19683 1.21616 1.12685 1.04321 0.94401 1.22741 1.01900 0.93989 0.99092 1.20547 0.96519 0.93634 0.95373 1.22362 0.97372 1.01561 0.92413 1.20167 0.95871 0.92769 0.98155 0.94608 0.87649 0.93539 0.86439 0.87651 0.93510 0.94617 0.92248 0.89870 0.89592 0.90767 0.87609 0.93396 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 9.36 71.98 0.67 -4.25 16 2 C 0.15 5.26 3.60 44.99 0.16 5.42 16 3 C -0.15 -4.92 9.37 71.98 0.67 -4.24 16 4 N -0.32 -15.36 3.07 -313.23 -0.96 -16.32 16 5 N -0.34 -20.35 9.90 -51.66 -0.51 -20.86 16 6 C 0.16 9.66 6.78 40.75 0.28 9.94 16 7 C -0.48 -29.95 9.42 23.44 0.22 -29.73 16 8 H 0.07 4.22 7.84 -2.91 -0.02 4.20 16 9 C 0.02 1.27 5.49 85.22 0.47 1.73 16 10 N -0.83 -50.56 11.98 21.81 0.26 -50.30 16 11 Si 0.98 44.22 29.56 68.60 2.03 46.25 16 12 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 13 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 14 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 15 C -0.32 -16.38 6.99 -19.61 -0.14 -16.52 16 16 C -0.05 -2.25 7.52 41.27 0.31 -1.94 16 17 C -0.02 -0.66 6.78 30.53 0.21 -0.46 16 18 C -0.10 -2.80 7.14 31.62 0.23 -2.58 16 19 C -0.03 -1.22 6.78 30.45 0.21 -1.02 16 20 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.10 2.53 8.14 -2.39 -0.02 2.52 16 22 H 0.05 1.59 8.14 -2.38 -0.02 1.58 16 23 H 0.12 3.30 8.04 -2.39 -0.02 3.28 16 24 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.27 15.07 8.30 -92.71 -0.77 14.30 16 28 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -77.34 276.96 5.18 -72.16 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 1.08 Total: 12.73 kcal Atomic # 6 Polarization: -46.94 SS G_CDS: 3.29 Total: -43.65 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -1.21 Total: -87.48 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -77.34 5.18 -72.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261091635.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.959 kcal (2) G-P(sol) polarization free energy of solvation -77.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds