Wall clock time and date at job start Mon Mar 30 2020 20:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47284 * 2 1 4 4 C 1.50704 * 109.46817 * 240.00306 * 2 1 3 5 5 H 1.08001 * 119.99961 * 240.00066 * 4 2 1 6 6 C 1.37876 * 120.00406 * 60.00059 * 4 2 1 7 7 N 1.31520 * 119.99531 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00291 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47158 * 59.99893 * 8 6 4 10 10 H 1.48501 * 109.46994 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46885 * 299.99904 * 8 6 4 12 12 N 1.46895 * 109.47406 * 120.00432 * 2 1 3 13 13 C 1.46906 * 110.99789 * 299.99534 * 12 2 1 14 14 C 1.50703 * 109.47109 * 179.97438 * 13 12 2 15 15 C 1.38654 * 120.78759 * 269.72319 * 14 13 12 16 16 C 1.38207 * 119.15749 * 179.79963 * 15 14 13 17 17 N 1.31867 * 120.76643 * 0.48192 * 16 15 14 18 18 C 1.31872 * 121.72449 * 359.74582 * 17 16 15 19 19 C 1.38204 * 120.76345 * 0.02562 * 18 17 16 20 20 H 1.09007 * 109.46476 * 300.00168 * 1 2 3 21 21 H 1.08992 * 109.47092 * 59.99731 * 1 2 3 22 22 H 1.08993 * 109.47354 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46930 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.47133 * 300.00442 * 3 2 1 25 25 H 1.08997 * 109.46976 * 60.00444 * 3 2 1 26 26 H 0.96996 * 119.99726 * 180.02562 * 7 6 4 27 27 H 1.00899 * 111.00672 * 176.04479 * 12 2 1 28 28 H 1.08992 * 109.47459 * 299.99826 * 13 12 2 29 29 H 1.09004 * 109.47040 * 59.99976 * 13 12 2 30 30 H 1.07998 * 120.42103 * 359.97438 * 15 14 13 31 31 H 1.08001 * 119.61549 * 180.20404 * 16 15 14 32 32 H 1.08001 * 119.61461 * 179.97438 * 18 17 16 33 33 H 1.08005 * 120.41730 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3212 -1.1203 -4.0081 9 1 1.8256 -2.5201 -4.0079 10 1 1.8258 -0.4204 -5.2205 11 1 3.8063 -1.1209 -4.0083 12 7 2.0197 -0.6925 1.1993 13 6 1.5488 -0.0264 2.4210 14 6 2.0695 -0.7638 3.6278 15 6 1.3392 -1.7946 4.1993 16 6 1.8506 -2.4508 5.3030 17 7 3.0131 -2.1003 5.8174 18 6 3.7324 -1.1221 5.3029 19 6 3.2873 -0.4237 4.1965 20 1 -0.3632 0.5139 0.8901 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 3.1301 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8899 25 1 1.6768 1.9563 0.8900 26 1 0.7081 1.1610 -3.4843 27 1 3.0263 -0.7627 1.1909 28 1 1.9123 1.0010 2.4379 29 1 0.4589 -0.0265 2.4379 30 1 0.3841 -2.0829 3.7856 31 1 1.2894 -3.2569 5.7520 32 1 4.6799 -0.8631 5.7520 33 1 3.8808 0.3768 3.7799 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261112477.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:24 Heat of formation + Delta-G solvation = 34.290287 kcal Electronic energy + Delta-G solvation = -14700.692533 eV Core-core repulsion = 12340.263362 eV Total energy + Delta-G solvation = -2360.429171 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.93314 -37.00616 -33.68572 -31.75220 -31.01261 -28.79224 -25.89576 -25.64753 -24.65726 -23.24103 -21.52240 -18.75710 -16.87208 -16.11915 -15.87936 -15.39846 -14.94679 -14.16491 -13.82358 -13.55228 -13.34842 -12.97117 -12.22251 -12.08266 -11.80519 -11.41801 -11.01967 -10.95579 -10.74832 -10.34060 -10.29934 -10.08148 -9.78092 -9.35131 -9.29215 -8.97651 -8.80467 -8.40618 -7.31274 -6.02622 -4.09955 1.31845 1.46975 3.30143 3.34494 3.37938 3.99557 4.38598 4.59566 4.93741 4.97337 5.25228 5.31703 5.36076 5.50082 5.78013 5.81121 6.02556 6.14692 6.24322 6.58103 6.65719 6.74804 6.83760 6.89568 6.95065 7.13984 7.51412 7.54860 7.77984 7.85669 8.11393 8.30030 8.43828 8.59983 8.96010 9.56342 11.00438 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.047581 B = 0.006364 C = 0.006199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.331612 B = 4398.775466 C = 4515.793292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.233 3.767 3 C -0.168 4.168 4 C -0.498 4.498 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.673 5.673 13 C 0.085 3.915 14 C -0.022 4.022 15 C -0.154 4.154 16 C 0.091 3.909 17 N -0.497 5.497 18 C 0.092 3.908 19 C -0.171 4.171 20 H 0.007 0.993 21 H 0.085 0.915 22 H 0.033 0.967 23 H 0.024 0.976 24 H 0.090 0.910 25 H 0.010 0.990 26 H 0.260 0.740 27 H 0.328 0.672 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.134 0.866 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.461 -0.996 10.616 10.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.144 3.856 3 C -0.227 4.227 4 C -0.537 4.537 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.303 5.303 13 C -0.044 4.044 14 C -0.030 4.030 15 C -0.174 4.174 16 C -0.066 4.066 17 N -0.206 5.206 18 C -0.065 4.065 19 C -0.192 4.192 20 H 0.026 0.974 21 H 0.104 0.896 22 H 0.052 0.948 23 H 0.043 0.957 24 H 0.108 0.892 25 H 0.029 0.971 26 H 0.071 0.929 27 H 0.145 0.855 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.152 0.848 31 H 0.169 0.831 32 H 0.168 0.832 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.164 -1.788 11.170 11.372 hybrid contribution 0.587 0.854 -1.633 1.934 sum 1.751 -0.934 9.537 9.741 Atomic orbital electron populations 1.21827 0.97170 0.99517 0.99931 1.18588 0.92245 0.88682 0.86066 1.22469 0.98478 1.00950 1.00812 1.20998 1.31246 1.11884 0.89542 0.92206 1.24867 0.95104 0.95034 0.98896 1.69800 1.36895 1.22909 1.23360 0.86563 0.79053 0.79766 0.82016 1.20277 1.21364 1.20408 1.60939 1.15196 1.53519 1.00617 1.21021 1.00730 0.94588 0.88025 1.20563 0.93269 0.94169 0.95045 1.22073 1.01774 0.96556 0.97026 1.22694 0.92183 0.98249 0.93427 1.67618 1.06757 1.14834 1.31420 1.22637 0.98789 0.91690 0.93363 1.22085 0.97065 1.02030 0.97995 0.97399 0.89613 0.94811 0.95695 0.89166 0.97061 0.92943 0.85503 0.94461 0.90108 0.84774 0.83147 0.83236 0.85211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.02 37.16 0.30 -2.69 16 2 C 0.23 5.53 0.69 -132.75 -0.09 5.44 16 3 C -0.17 -3.89 8.01 37.16 0.30 -3.59 16 4 C -0.50 -13.21 8.22 -34.44 -0.28 -13.50 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.65 5.15 -17.82 -0.09 1.55 16 7 N -0.89 -24.06 9.35 55.43 0.52 -23.54 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 N -0.67 -13.90 6.07 -102.39 -0.62 -14.52 16 13 C 0.09 1.49 5.08 -4.97 -0.03 1.46 16 14 C -0.02 -0.34 5.43 -104.32 -0.57 -0.90 16 15 C -0.15 -2.21 9.82 -39.44 -0.39 -2.59 16 16 C 0.09 1.23 11.18 -17.55 -0.20 1.03 16 17 N -0.50 -7.23 10.36 -13.25 -0.14 -7.37 16 18 C 0.09 1.22 11.18 -17.55 -0.20 1.02 16 19 C -0.17 -2.38 9.82 -39.44 -0.39 -2.77 16 20 H 0.01 0.15 6.40 -51.92 -0.33 -0.18 16 21 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 22 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 25 H 0.01 0.22 6.40 -51.93 -0.33 -0.11 16 26 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 27 H 0.33 6.71 8.71 -39.29 -0.34 6.37 16 28 H 0.04 0.65 6.26 -51.93 -0.33 0.33 16 29 H 0.08 1.43 6.26 -51.93 -0.33 1.11 16 30 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 270.04 15.07 4.07 4.07 Total: -1.00 -27.80 270.04 -7.19 -34.99 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -4.37 Total: 6.01 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -1.63 Total: -15.53 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: -0.24 Total: -45.43 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.80 -7.19 -34.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112477.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.278 kcal (2) G-P(sol) polarization free energy of solvation -27.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds