Wall clock time and date at job start Mon Mar 30 2020 20:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47479 * 2 1 4 4 H 1.09002 * 109.50270 * 304.99795 * 3 2 1 5 5 C 1.53135 * 109.50742 * 184.91501 * 3 2 1 6 6 C 1.53306 * 109.47462 * 170.20788 * 5 3 2 7 7 N 1.46591 * 108.82180 * 50.49320 * 6 5 3 8 8 C 1.35591 * 127.34426 * 162.82805 * 7 6 5 9 9 C 1.39218 * 106.29541 * 180.13469 * 8 7 6 10 10 C 1.41217 * 126.41802 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00295 * 0.02562 * 10 9 8 12 12 C 1.39716 * 120.00026 * 179.97438 * 10 9 8 13 13 N 1.31019 * 120.00018 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00113 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47338 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47366 * 119.99880 * 14 12 10 17 17 H 1.48500 * 109.47243 * 239.99756 * 14 12 10 18 18 N 1.36069 * 107.16398 * 359.96933 * 9 8 7 19 19 C 1.29882 * 109.17219 * 359.97438 * 18 9 8 20 20 C 1.51208 * 126.82727 * 180.02562 * 19 18 9 21 21 H 1.09007 * 109.46979 * 59.99910 * 1 2 3 22 22 H 1.09000 * 109.47653 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47358 * 300.00045 * 1 2 3 24 24 H 1.09005 * 109.47625 * 239.99982 * 2 1 3 25 25 H 1.09007 * 109.47260 * 119.99619 * 2 1 3 26 26 H 1.09001 * 109.46140 * 290.15058 * 5 3 2 27 27 H 1.08996 * 109.46777 * 50.13117 * 5 3 2 28 28 H 1.09004 * 109.52996 * 290.71212 * 6 5 3 29 29 H 1.08998 * 109.71414 * 170.38933 * 6 5 3 30 30 H 1.07996 * 126.85399 * 0.10998 * 8 7 6 31 31 H 0.96994 * 120.00004 * 180.02562 * 13 12 10 32 32 H 1.09001 * 109.70978 * 44.28595 * 20 19 18 33 33 H 1.08990 * 109.75021 * 283.66280 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9820 -0.8417 5 6 3.5664 1.4451 -0.1237 6 6 4.0568 2.8767 -0.3691 7 7 3.4600 3.7601 0.6371 8 6 3.8642 5.0084 0.9791 9 6 2.9944 5.4410 1.9764 10 6 3.0313 6.6881 2.6379 11 1 3.7894 7.4133 2.3814 12 6 2.0865 6.9842 3.6237 13 7 1.1659 6.1051 3.9340 14 14 2.1358 8.6335 4.4993 15 1 3.2630 9.4419 3.9693 16 1 0.8585 9.3549 4.2685 17 1 2.3246 8.4151 5.9560 18 7 2.1019 4.4372 2.1941 19 6 2.3755 3.4442 1.4028 20 6 1.6370 2.1279 1.3117 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8901 26 1 4.0061 1.0643 0.7981 27 1 3.8643 0.8098 -0.9577 28 1 3.7537 3.2000 -1.3650 29 1 5.1432 2.9122 -0.2883 30 1 4.6952 5.5573 0.5616 31 1 0.5098 6.3108 4.6180 32 1 0.5621 2.3083 1.3171 33 1 1.9078 1.4945 2.1563 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261163130.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:40 Heat of formation + Delta-G solvation = 14.704797 kcal Electronic energy + Delta-G solvation = -14902.343605 eV Core-core repulsion = 12541.065144 eV Total energy + Delta-G solvation = -2361.278461 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.14028 -38.21905 -35.37884 -34.27546 -31.95841 -30.66042 -28.85347 -27.16278 -24.93231 -23.32910 -21.75845 -21.25354 -19.69991 -18.52019 -17.12457 -16.68209 -16.22260 -15.64476 -15.13959 -14.87351 -14.51877 -14.28749 -14.13653 -13.72844 -13.23120 -12.97368 -12.88707 -12.58164 -12.48912 -12.34776 -12.01566 -11.72752 -11.58339 -11.35767 -11.33783 -11.06194 -9.95140 -9.76572 -8.85194 -8.19694 -6.05248 1.34035 1.40891 1.57040 1.72371 2.34126 2.53737 2.65931 3.64102 3.70396 3.75671 3.84713 3.97064 4.36499 4.44229 4.49746 4.54629 4.61470 4.64417 4.79665 4.92023 4.98187 5.02864 5.12098 5.21795 5.25046 5.32128 5.44693 5.53840 5.56473 5.93678 6.05414 6.42349 6.95628 7.16667 7.33961 8.16215 8.76937 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.046330 B = 0.007343 C = 0.006460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.220403 B = 3812.348182 C = 4333.573235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.106 4.106 3 C -0.082 4.082 4 H 0.067 0.933 5 C -0.117 4.117 6 C 0.102 3.898 7 N -0.464 5.464 8 C -0.227 4.227 9 C 0.141 3.859 10 C -0.495 4.495 11 H 0.074 0.926 12 C 0.021 3.979 13 N -0.819 5.819 14 Si 0.983 3.017 15 H -0.257 1.257 16 H -0.271 1.271 17 H -0.271 1.271 18 N -0.511 5.511 19 C 0.156 3.844 20 C -0.013 4.013 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.043 0.957 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.120 0.880 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.157 0.843 31 H 0.267 0.733 32 H 0.073 0.927 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.845 -11.833 -8.553 14.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.143 4.143 3 C -0.102 4.102 4 H 0.086 0.914 5 C -0.155 4.155 6 C -0.019 4.019 7 N -0.154 5.154 8 C -0.354 4.354 9 C 0.017 3.983 10 C -0.530 4.530 11 H 0.092 0.908 12 C -0.192 4.192 13 N -0.447 5.447 14 Si 0.805 3.195 15 H -0.181 1.181 16 H -0.196 1.196 17 H -0.196 1.196 18 N -0.235 5.235 19 C -0.106 4.106 20 C -0.053 4.053 21 H 0.072 0.928 22 H 0.087 0.913 23 H 0.063 0.937 24 H 0.106 0.894 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.139 0.861 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.174 0.826 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.133 -11.937 -7.989 14.408 hybrid contribution 0.647 1.213 0.059 1.376 sum 1.780 -10.724 -7.930 13.456 Atomic orbital electron populations 1.21837 0.95902 1.02157 1.01586 1.21504 0.95939 0.93553 1.03337 1.21263 0.95635 0.97564 0.95691 0.91407 1.21924 0.95296 0.93983 1.04253 1.22035 0.98793 0.90423 0.90673 1.44970 1.25240 1.13290 1.31908 1.22443 1.10132 0.90746 1.12128 1.19045 0.91135 0.93934 0.94190 1.18843 1.14650 0.99511 1.20020 0.90782 1.26727 0.93867 1.01674 0.96918 1.70271 1.12845 1.35401 1.26144 0.85161 0.78893 0.77523 0.77919 1.18098 1.19600 1.19573 1.70878 1.27358 1.01125 1.24100 1.24409 0.91916 0.99457 0.94800 1.20209 0.98195 0.87586 0.99262 0.92848 0.91269 0.93746 0.89429 0.91337 0.91600 0.86140 0.90352 0.89491 0.82559 0.92289 0.90837 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.69 71.98 0.70 -2.30 16 2 C -0.11 -1.94 5.39 30.59 0.16 -1.78 16 3 C -0.08 -2.10 2.20 -10.62 -0.02 -2.12 16 4 H 0.07 1.81 8.12 -2.39 -0.02 1.79 16 5 C -0.12 -2.69 5.25 30.74 0.16 -2.53 16 6 C 0.10 3.08 6.96 86.46 0.60 3.68 16 7 N -0.46 -20.89 3.14 -509.15 -1.60 -22.48 16 8 C -0.23 -11.98 11.69 84.35 0.99 -11.00 16 9 C 0.14 8.79 6.69 39.45 0.26 9.05 16 10 C -0.49 -30.75 9.38 23.36 0.22 -30.53 16 11 H 0.07 4.35 7.84 -2.91 -0.02 4.33 16 12 C 0.02 1.26 5.49 85.17 0.47 1.73 16 13 N -0.82 -50.98 11.94 21.79 0.26 -50.72 16 14 Si 0.98 44.17 29.56 68.60 2.03 46.20 16 15 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 N -0.51 -31.34 9.50 -178.92 -1.70 -33.04 16 19 C 0.16 7.70 7.63 138.01 1.05 8.76 16 20 C -0.01 -0.49 5.09 30.14 0.15 -0.34 16 21 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 22 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.04 0.99 6.84 -2.39 -0.02 0.97 16 24 H 0.09 1.19 8.12 -2.38 -0.02 1.17 16 25 H 0.07 1.22 8.12 -2.38 -0.02 1.20 16 26 H 0.07 1.61 8.11 -2.39 -0.02 1.59 16 27 H 0.12 1.77 8.10 -2.39 -0.02 1.75 16 28 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.16 7.46 8.06 -2.91 -0.02 7.44 16 31 H 0.27 15.22 8.30 -92.71 -0.77 14.45 16 32 H 0.07 2.75 7.17 -2.39 -0.02 2.73 16 33 H 0.08 2.69 8.10 -2.39 -0.02 2.67 16 Total: -1.00 -77.93 270.34 4.81 -73.11 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 1.08 Total: 14.31 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 4.74 Total: -27.37 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -3.04 Total: -106.24 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -77.93 4.81 -73.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261163130.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.816 kcal (2) G-P(sol) polarization free energy of solvation -77.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds