Wall clock time and date at job start Mon Mar 30 2020 20:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47232 * 2 1 4 4 N 1.46500 * 109.47449 * 239.99376 * 2 1 3 5 5 C 1.46501 * 119.99564 * 63.99155 * 4 2 1 6 6 C 1.50704 * 109.46943 * 89.99945 * 5 4 2 7 7 H 1.08003 * 120.00086 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00132 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99870 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00207 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46735 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.46971 * 120.00061 * 10 8 6 13 13 H 1.48499 * 109.46790 * 240.00043 * 10 8 6 14 14 C 1.39699 * 120.00216 * 243.99510 * 4 2 1 15 15 C 1.39317 * 120.49278 * 185.38208 * 14 4 2 16 16 C 1.38494 * 118.35973 * 179.71100 * 15 14 4 17 17 C 1.38274 * 119.24039 * 0.58345 * 16 15 14 18 18 N 1.31849 * 120.92845 * 359.67374 * 17 16 15 19 19 C 1.31822 * 121.80200 * 0.02593 * 18 17 16 20 20 H 1.08997 * 109.46421 * 57.70408 * 1 2 3 21 21 H 1.08996 * 109.47314 * 297.70536 * 1 2 3 22 22 H 1.08999 * 109.47170 * 177.70215 * 1 2 3 23 23 H 1.09004 * 109.46784 * 119.99617 * 2 1 3 24 24 H 1.09003 * 109.47223 * 62.34327 * 3 2 1 25 25 H 1.09001 * 109.47100 * 182.34068 * 3 2 1 26 26 H 1.08999 * 109.46742 * 302.34081 * 3 2 1 27 27 H 1.08995 * 109.47408 * 209.99947 * 5 4 2 28 28 H 1.09003 * 109.47131 * 330.00376 * 5 4 2 29 29 H 0.96998 * 120.00308 * 179.97438 * 9 8 6 30 30 H 1.08008 * 120.81771 * 359.97438 * 15 14 4 31 31 H 1.07999 * 120.37717 * 180.25436 * 16 15 14 32 32 H 1.08000 * 119.53307 * 179.69950 * 17 16 15 33 33 H 1.07996 * 119.67412 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.7381 -0.1413 -2.5249 6 6 2.8458 0.7995 -2.9234 7 1 3.6759 0.9707 -2.2540 8 6 2.8002 1.4409 -4.1431 9 7 1.7897 1.2320 -4.9585 10 14 4.1737 2.6065 -4.6374 11 1 5.1858 2.6672 -3.5524 12 1 4.8141 2.1163 -5.8843 13 1 3.6132 3.9621 -4.8687 14 6 2.7514 -1.8732 -1.0695 15 6 3.3157 -2.4785 -2.1902 16 6 4.0387 -3.6465 -2.0131 17 6 4.1656 -4.1761 -0.7421 18 7 3.6147 -3.5817 0.2978 19 6 2.9236 -2.4659 0.1747 20 1 -0.3632 0.5491 -0.8687 21 1 -0.3634 0.4778 0.9098 22 1 -0.3633 -1.0268 -0.0412 23 1 1.8933 -0.5138 0.8901 24 1 1.7114 1.9441 0.9103 25 1 3.1292 1.4427 -0.0420 26 1 1.6428 1.9682 -0.8683 27 1 1.6741 -0.9543 -3.2481 28 1 0.7922 0.4000 -2.5021 29 1 1.7573 1.6835 -5.8164 30 1 3.1960 -2.0453 -3.1723 31 1 4.4936 -4.1407 -2.8588 32 1 4.7243 -5.0893 -0.5993 33 1 2.4867 -2.0084 1.0500 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261167690.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:47 Heat of formation + Delta-G solvation = 34.109880 kcal Electronic energy + Delta-G solvation = -15064.477401 eV Core-core repulsion = 12704.040407 eV Total energy + Delta-G solvation = -2360.436994 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.60214 -36.99451 -33.06164 -32.32216 -31.01265 -29.17554 -26.79289 -26.48334 -23.63629 -22.62314 -21.45856 -19.26468 -17.21957 -16.52752 -15.68305 -15.52551 -14.59766 -14.03931 -13.76216 -13.57504 -12.92672 -12.80329 -12.49121 -12.34966 -11.97429 -11.62285 -11.31239 -11.16712 -11.03920 -10.85428 -10.55964 -10.34571 -10.09484 -9.85799 -9.26239 -8.86584 -8.80238 -8.55551 -6.62841 -6.09533 -4.21610 1.88732 2.17155 3.21087 3.30030 3.34228 3.92814 4.34814 4.56657 5.04783 5.16740 5.37467 5.49873 5.59913 5.63219 5.70442 5.84640 6.03141 6.09364 6.13028 6.25312 6.30147 6.39585 6.63029 6.77187 6.90253 6.95344 7.04635 7.26980 7.30571 7.75933 8.08080 8.15871 8.32381 8.68813 8.87170 9.44783 10.90569 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.024484 B = 0.010349 C = 0.008301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.328234 B = 2705.042064 C = 3372.240707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 C -0.154 4.154 4 N -0.598 5.598 5 C 0.249 3.751 6 C -0.526 4.526 7 H 0.061 0.939 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.893 3.107 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.284 1.284 14 C 0.195 3.805 15 C -0.151 4.151 16 C -0.125 4.125 17 C 0.003 3.997 18 N -0.453 5.453 19 C -0.007 4.007 20 H 0.064 0.936 21 H 0.057 0.943 22 H 0.052 0.948 23 H 0.075 0.925 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.032 0.968 28 H 0.035 0.965 29 H 0.263 0.737 30 H 0.142 0.858 31 H 0.123 0.877 32 H 0.139 0.861 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.006 -3.782 6.746 7.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 C -0.212 4.212 4 N -0.302 5.302 5 C 0.129 3.871 6 C -0.565 4.565 7 H 0.079 0.921 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.721 3.279 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.210 1.210 14 C 0.085 3.915 15 C -0.182 4.182 16 C -0.145 4.145 17 C -0.157 4.157 18 N -0.161 5.161 19 C -0.170 4.170 20 H 0.083 0.917 21 H 0.076 0.924 22 H 0.071 0.929 23 H 0.093 0.907 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.160 0.840 31 H 0.141 0.859 32 H 0.157 0.843 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.108 -3.878 7.357 8.317 hybrid contribution 0.665 1.149 -1.390 1.922 sum 0.557 -2.730 5.967 6.585 Atomic orbital electron populations 1.22185 0.96035 1.01775 1.01995 1.20905 0.93488 0.93659 0.88056 1.22122 1.01737 0.95679 1.01632 1.47292 1.54040 1.21281 1.07635 1.19267 0.96652 0.93947 0.77217 1.21605 1.07264 1.25572 1.02058 0.92066 1.24957 0.95952 0.96891 0.96293 1.69935 1.30287 1.43216 1.09881 0.86512 0.82158 0.80667 0.78582 1.19737 1.20922 1.20962 1.18976 0.90686 0.87338 0.94519 1.21342 1.00522 0.96893 0.99403 1.21836 0.98435 0.95980 0.98271 1.22117 1.03695 1.01214 0.88688 1.67316 1.06536 1.08176 1.34041 1.22160 1.04298 0.95150 0.95426 0.91746 0.92408 0.92896 0.90692 0.93414 0.92538 0.90584 0.95042 0.94705 0.92713 0.84011 0.85917 0.84318 0.83885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.20 37.16 0.34 -2.12 16 2 C 0.14 2.44 3.18 -67.93 -0.22 2.22 16 3 C -0.15 -2.64 8.31 37.16 0.31 -2.33 16 4 N -0.60 -12.10 2.52 -165.41 -0.42 -12.52 16 5 C 0.25 5.90 4.16 -5.19 -0.02 5.88 16 6 C -0.53 -13.56 7.89 -34.44 -0.27 -13.83 16 7 H 0.06 1.62 7.45 -52.48 -0.39 1.23 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.89 -24.82 13.29 55.43 0.74 -24.08 16 10 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.19 3.89 6.55 -83.63 -0.55 3.34 16 15 C -0.15 -3.00 9.26 -39.09 -0.36 -3.36 16 16 C -0.12 -2.12 10.10 -39.47 -0.40 -2.52 16 17 C 0.00 0.04 11.18 -17.53 -0.20 -0.15 16 18 N -0.45 -8.39 10.35 -13.08 -0.14 -8.53 16 19 C -0.01 -0.13 10.45 -17.31 -0.18 -0.31 16 20 H 0.06 1.08 6.90 -51.93 -0.36 0.72 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.08 1.16 5.40 -51.93 -0.28 0.87 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 1.04 7.89 -51.93 -0.41 0.63 16 26 H 0.08 1.49 7.12 -51.93 -0.37 1.12 16 27 H 0.03 0.80 6.48 -51.93 -0.34 0.47 16 28 H 0.04 0.87 6.69 -51.93 -0.35 0.52 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.14 3.04 6.42 -52.48 -0.34 2.70 16 31 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 32 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.14 2.36 5.83 -52.49 -0.31 2.05 16 LS Contribution 271.80 15.07 4.10 4.10 Total: -1.00 -27.80 271.80 -6.77 -34.56 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -4.38 Total: 2.37 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -1.64 Total: -11.66 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.18 Total: -45.13 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.80 -6.77 -34.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261167690.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.674 kcal (2) G-P(sol) polarization free energy of solvation -27.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds