Wall clock time and date at job start Mon Mar 30 2020 20:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47232 * 2 1 4 4 N 1.46500 * 109.47449 * 239.99376 * 2 1 3 5 5 C 1.46501 * 119.99564 * 63.99155 * 4 2 1 6 6 C 1.50704 * 109.46943 * 89.99945 * 5 4 2 7 7 H 1.08003 * 120.00086 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00132 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99870 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00207 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46735 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.46971 * 120.00061 * 10 8 6 13 13 H 1.48499 * 109.46790 * 240.00043 * 10 8 6 14 14 C 1.39699 * 120.00216 * 243.99510 * 4 2 1 15 15 C 1.39317 * 120.49278 * 185.38208 * 14 4 2 16 16 C 1.38494 * 118.35973 * 179.71100 * 15 14 4 17 17 C 1.38274 * 119.24039 * 0.58345 * 16 15 14 18 18 N 1.31849 * 120.92845 * 359.67374 * 17 16 15 19 19 C 1.31822 * 121.80200 * 0.02593 * 18 17 16 20 20 H 1.08997 * 109.46421 * 57.70408 * 1 2 3 21 21 H 1.08996 * 109.47314 * 297.70536 * 1 2 3 22 22 H 1.08999 * 109.47170 * 177.70215 * 1 2 3 23 23 H 1.09004 * 109.46784 * 119.99617 * 2 1 3 24 24 H 1.09003 * 109.47223 * 62.34327 * 3 2 1 25 25 H 1.09001 * 109.47100 * 182.34068 * 3 2 1 26 26 H 1.08999 * 109.46742 * 302.34081 * 3 2 1 27 27 H 1.08995 * 109.47408 * 209.99947 * 5 4 2 28 28 H 1.09003 * 109.47131 * 330.00376 * 5 4 2 29 29 H 0.96998 * 120.00308 * 179.97438 * 9 8 6 30 30 H 1.08008 * 120.81771 * 359.97438 * 15 14 4 31 31 H 1.07999 * 120.37717 * 180.25436 * 16 15 14 32 32 H 1.08000 * 119.53307 * 179.69950 * 17 16 15 33 33 H 1.07996 * 119.67412 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.7381 -0.1413 -2.5249 6 6 2.8458 0.7995 -2.9234 7 1 3.6759 0.9707 -2.2540 8 6 2.8002 1.4409 -4.1431 9 7 1.7897 1.2320 -4.9585 10 14 4.1737 2.6065 -4.6374 11 1 5.1858 2.6672 -3.5524 12 1 4.8141 2.1163 -5.8843 13 1 3.6132 3.9621 -4.8687 14 6 2.7514 -1.8732 -1.0695 15 6 3.3157 -2.4785 -2.1902 16 6 4.0387 -3.6465 -2.0131 17 6 4.1656 -4.1761 -0.7421 18 7 3.6147 -3.5817 0.2978 19 6 2.9236 -2.4659 0.1747 20 1 -0.3632 0.5491 -0.8687 21 1 -0.3634 0.4778 0.9098 22 1 -0.3633 -1.0268 -0.0412 23 1 1.8933 -0.5138 0.8901 24 1 1.7114 1.9441 0.9103 25 1 3.1292 1.4427 -0.0420 26 1 1.6428 1.9682 -0.8683 27 1 1.6741 -0.9543 -3.2481 28 1 0.7922 0.4000 -2.5021 29 1 1.7573 1.6835 -5.8164 30 1 3.1960 -2.0453 -3.1723 31 1 4.4936 -4.1407 -2.8588 32 1 4.7243 -5.0893 -0.5993 33 1 2.4867 -2.0084 1.0500 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261167690.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:46 Heat of formation + Delta-G solvation = 18.508627 kcal Electronic energy + Delta-G solvation = -15065.153922 eV Core-core repulsion = 12704.040407 eV Total energy + Delta-G solvation = -2361.113515 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.05621 -38.48157 -34.96529 -33.85459 -32.41977 -30.89223 -28.39491 -27.91311 -25.38429 -24.12417 -22.98730 -20.73936 -18.70664 -18.55291 -17.15979 -17.03536 -16.40584 -15.42579 -15.26834 -15.10821 -14.38497 -14.36235 -14.09785 -13.98265 -13.36560 -13.16420 -12.98654 -12.80507 -12.63920 -12.44181 -12.25776 -12.06647 -11.62762 -11.49715 -10.99919 -10.61754 -10.29710 -10.25203 -8.39391 -7.92668 -6.31978 0.46056 0.70476 1.35119 1.38396 1.48777 2.31761 2.49061 3.09468 3.13874 3.70044 4.04429 4.12723 4.19397 4.29767 4.39342 4.42229 4.67456 4.76596 4.83080 4.90610 4.99222 5.02100 5.14395 5.17124 5.37809 5.42889 5.48612 5.52528 5.69710 5.88556 6.10461 6.44213 6.79524 6.84943 7.26762 7.38348 8.85865 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.024484 B = 0.010349 C = 0.008301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.328234 B = 2705.042064 C = 3372.240707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.136 3.864 3 C -0.146 4.146 4 N -0.606 5.606 5 C 0.270 3.730 6 C -0.524 4.524 7 H 0.051 0.949 8 C 0.014 3.986 9 N -0.926 5.926 10 Si 0.953 3.047 11 H -0.272 1.272 12 H -0.280 1.280 13 H -0.278 1.278 14 C 0.173 3.827 15 C -0.176 4.176 16 C -0.118 4.118 17 C 0.009 3.991 18 N -0.464 5.464 19 C -0.004 4.004 20 H 0.040 0.960 21 H 0.091 0.909 22 H 0.052 0.948 23 H 0.099 0.901 24 H 0.084 0.916 25 H 0.038 0.962 26 H 0.044 0.956 27 H 0.006 0.994 28 H 0.017 0.983 29 H 0.265 0.735 30 H 0.115 0.885 31 H 0.153 0.847 32 H 0.177 0.823 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.895 -4.415 8.239 9.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.033 3.967 3 C -0.204 4.204 4 N -0.313 5.313 5 C 0.148 3.852 6 C -0.563 4.563 7 H 0.069 0.931 8 C -0.185 4.185 9 N -0.566 5.566 10 Si 0.779 3.221 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.204 1.204 14 C 0.064 3.936 15 C -0.207 4.207 16 C -0.138 4.138 17 C -0.151 4.151 18 N -0.172 5.172 19 C -0.166 4.166 20 H 0.059 0.941 21 H 0.109 0.891 22 H 0.071 0.929 23 H 0.117 0.883 24 H 0.102 0.898 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.024 0.976 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.133 0.867 31 H 0.171 0.829 32 H 0.194 0.806 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.788 -4.526 8.878 9.996 hybrid contribution 0.422 1.241 -1.819 2.242 sum 1.210 -3.285 7.059 7.879 Atomic orbital electron populations 1.22115 0.94664 1.01811 1.02576 1.21189 0.94614 0.93356 0.87506 1.22040 1.00370 0.95991 1.02011 1.47177 1.55015 1.21945 1.07130 1.18731 0.95187 0.92427 0.78843 1.21737 1.07212 1.25538 1.01798 0.93122 1.25675 0.97969 0.98430 0.96430 1.70033 1.31916 1.44385 1.10300 0.85580 0.79547 0.78909 0.78087 1.19612 1.20609 1.20367 1.19198 0.91417 0.87575 0.95364 1.21356 1.02301 0.98556 0.98445 1.22144 0.97194 0.94729 0.99733 1.22745 1.02539 1.01801 0.87981 1.67416 1.06878 1.08200 1.34726 1.22395 1.03948 0.95061 0.95242 0.94096 0.89054 0.92859 0.88346 0.89764 0.94301 0.93694 0.97639 0.96504 0.92604 0.86695 0.82942 0.80627 0.81971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 9.20 71.98 0.66 -3.84 16 2 C 0.14 4.51 3.18 44.99 0.14 4.66 16 3 C -0.15 -4.93 8.31 71.98 0.60 -4.33 16 4 N -0.61 -24.90 2.52 -677.24 -1.71 -26.61 16 5 C 0.27 13.33 4.16 85.63 0.36 13.69 16 6 C -0.52 -27.82 7.89 25.60 0.20 -27.62 16 7 H 0.05 2.75 7.45 -2.91 -0.02 2.73 16 8 C 0.01 0.76 5.46 84.66 0.46 1.22 16 9 N -0.93 -52.77 13.29 21.45 0.28 -52.48 16 10 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 14 C 0.17 6.87 6.55 38.30 0.25 7.12 16 15 C -0.18 -7.03 9.26 22.59 0.21 -6.82 16 16 C -0.12 -3.79 10.10 22.34 0.23 -3.57 16 17 C 0.01 0.27 11.18 84.70 0.95 1.21 16 18 N -0.46 -15.99 10.35 -195.29 -2.02 -18.01 16 19 C 0.00 -0.13 10.45 84.85 0.89 0.75 16 20 H 0.04 1.38 6.90 -2.39 -0.02 1.36 16 21 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 22 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.10 2.79 5.40 -2.39 -0.01 2.78 16 24 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.04 1.41 7.89 -2.39 -0.02 1.40 16 26 H 0.04 1.78 7.12 -2.39 -0.02 1.76 16 27 H 0.01 0.31 6.48 -2.39 -0.02 0.29 16 28 H 0.02 0.89 6.69 -2.39 -0.02 0.88 16 29 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.12 5.17 6.42 -2.91 -0.02 5.15 16 31 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 32 H 0.18 4.02 8.06 -2.91 -0.02 4.00 16 33 H 0.16 4.93 5.83 -2.91 -0.02 4.91 16 Total: -1.00 -60.48 271.80 4.62 -55.86 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 1.09 Total: 13.57 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 4.94 Total: -17.52 kcal Atomic # 7 Polarization: -93.66 SS G_CDS: -3.44 Total: -97.11 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -60.48 4.62 -55.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261167690.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.374 kcal (2) G-P(sol) polarization free energy of solvation -60.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds