Wall clock time and date at job start Mon Mar 30 2020 20:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46199 * 2 1 4 4 C 1.53143 * 109.46356 * 119.98683 * 2 1 3 5 5 C 1.53397 * 109.24346 * 189.49695 * 4 2 1 6 6 C 1.51048 * 108.20759 * 311.18580 * 5 4 2 7 7 N 1.30095 * 127.39046 * 195.99146 * 6 5 4 8 8 C 1.34288 * 109.20968 * 179.90761 * 7 6 5 9 9 C 1.50706 * 125.95885 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47238 * 305.02589 * 9 8 7 11 11 H 1.08002 * 119.99880 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99899 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00477 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99932 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47321 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46837 * 120.00227 * 14 12 10 17 17 H 1.48499 * 109.47400 * 239.99871 * 14 12 10 18 18 C 1.34849 * 108.07561 * 0.28314 * 8 7 6 19 19 N 1.35420 * 123.98227 * 15.94070 * 6 5 4 20 20 C 1.46474 * 124.82305 * 0.13071 * 19 6 5 21 21 H 1.09005 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47296 * 299.98762 * 1 2 3 23 23 H 1.09002 * 109.47139 * 59.99090 * 1 2 3 24 24 H 1.09006 * 109.51086 * 309.42574 * 4 2 1 25 25 H 1.09002 * 109.51210 * 69.56329 * 4 2 1 26 26 H 1.09004 * 109.71667 * 191.50843 * 5 4 2 27 27 H 1.08998 * 109.71947 * 70.86193 * 5 4 2 28 28 H 1.08997 * 109.47279 * 65.03138 * 9 8 7 29 29 H 1.08998 * 109.46666 * 185.02677 * 9 8 7 30 30 H 0.96998 * 120.00859 * 179.97438 * 13 12 10 31 31 H 1.08000 * 126.65570 * 179.73320 * 18 8 7 32 32 H 1.08999 * 109.57559 * 136.91756 * 20 19 6 33 33 H 1.08994 * 109.58408 * 257.32530 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0403 -0.7217 1.2506 5 6 3.5555 -0.5151 1.3707 6 6 4.1821 -0.8283 0.0324 7 7 5.4383 -1.0555 -0.2179 8 6 5.5908 -1.2963 -1.5302 9 6 6.8904 -1.6050 -2.2281 10 6 7.8875 -0.5127 -1.9391 11 1 7.6083 0.3213 -1.3123 12 6 9.1563 -0.5782 -2.4748 13 7 9.4961 -1.5935 -3.2384 14 14 10.3921 0.7762 -2.1171 15 1 9.7670 1.7975 -1.2390 16 1 11.5778 0.1970 -1.4358 17 1 10.8145 1.4102 -3.3918 18 6 4.3791 -1.2082 -2.1153 19 7 3.4871 -0.9173 -1.1264 20 6 2.0408 -0.7222 -1.2515 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5136 0.8900 23 1 -0.3633 0.5140 -0.8899 24 1 1.5464 -0.3145 2.1329 25 1 1.8233 -1.7869 1.1703 26 1 3.9588 -1.1839 2.1311 27 1 3.7653 0.5196 1.6417 28 1 7.2795 -2.5570 -1.8672 29 1 6.7199 -1.6662 -3.3029 30 1 10.3886 -1.6395 -3.6156 31 1 4.1579 -1.3440 -3.1637 32 1 1.8287 -0.1185 -2.1339 33 1 1.5480 -1.6902 -1.3415 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261170944.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:52 Heat of formation + Delta-G solvation = 38.364134 kcal Electronic energy + Delta-G solvation = -14630.410705 eV Core-core repulsion = 12270.158189 eV Total energy + Delta-G solvation = -2360.252515 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.61232 -37.20689 -33.21894 -32.70703 -31.42686 -29.21117 -27.23411 -25.65669 -23.75593 -22.56430 -21.21967 -19.18162 -18.69545 -16.39548 -15.97427 -15.58151 -14.47442 -14.44793 -14.34514 -13.70110 -13.49008 -12.99985 -12.63386 -12.54192 -12.04777 -11.83606 -11.49465 -11.16330 -11.04679 -10.90693 -10.81547 -10.57760 -10.51952 -9.70245 -9.21794 -8.90783 -8.70318 -8.24311 -7.29821 -5.85241 -3.84258 2.74883 3.30598 3.42055 3.48530 3.55760 4.06925 4.35726 4.45715 4.62587 4.63553 4.78646 5.14835 5.20892 5.28803 5.36866 5.41488 5.50080 5.53705 5.64248 5.75513 5.80459 5.89224 5.97938 6.13234 6.41296 6.62943 7.00129 7.63198 7.65675 7.85528 7.99511 8.13286 8.57772 9.07585 9.20767 9.77236 11.25931 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.054386 B = 0.006123 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.715361 B = 4571.865472 C = 4763.258813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 H 0.081 0.919 4 C -0.118 4.118 5 C -0.029 4.029 6 C 0.182 3.818 7 N -0.473 5.473 8 C 0.056 3.944 9 C 0.090 3.910 10 C -0.491 4.491 11 H 0.058 0.942 12 C 0.052 3.948 13 N -0.902 5.902 14 Si 0.894 3.106 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.286 1.286 18 C -0.090 4.090 19 N -0.466 5.466 20 C 0.114 3.886 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.031 0.969 29 H 0.030 0.970 30 H 0.258 0.742 31 H 0.165 0.835 32 H 0.081 0.919 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.007 2.277 6.116 20.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 H 0.099 0.901 4 C -0.156 4.156 5 C -0.068 4.068 6 C -0.079 4.079 7 N -0.192 5.192 8 C -0.072 4.072 9 C 0.053 3.947 10 C -0.530 4.530 11 H 0.076 0.924 12 C -0.148 4.148 13 N -0.543 5.543 14 Si 0.722 3.278 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.212 1.212 18 C -0.219 4.219 19 N -0.153 5.153 20 C -0.010 4.010 21 H 0.077 0.923 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.183 0.817 32 H 0.100 0.900 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.374 2.223 6.539 19.629 hybrid contribution 0.086 0.708 -0.674 0.982 sum -18.287 2.931 5.865 19.427 Atomic orbital electron populations 1.21760 0.93714 1.02270 1.02322 1.21459 0.96399 1.00444 0.94242 0.90054 1.21732 0.95255 1.01037 0.97533 1.20059 0.93173 1.02766 0.90755 1.23232 0.88129 1.07445 0.89113 1.70034 1.13978 1.17992 1.17218 1.21753 0.95764 1.00671 0.89047 1.17673 0.85884 0.97412 0.93779 1.21136 0.96105 1.06737 1.29041 0.92402 1.24993 0.98273 0.95985 0.95506 1.69966 1.19924 1.30313 1.34081 0.86499 0.81282 0.82197 0.77827 1.19827 1.21090 1.21235 1.22294 0.89981 1.15312 0.94332 1.45146 1.07076 1.54780 1.08294 1.21836 0.78956 1.00951 0.99217 0.92289 0.91857 0.92302 0.90465 0.91369 0.89179 0.89937 0.95066 0.95220 0.93212 0.81745 0.90019 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.17 37.16 0.34 -0.62 16 2 C -0.11 -1.02 2.73 -90.41 -0.25 -1.27 16 3 H 0.08 0.84 8.12 -51.92 -0.42 0.42 16 4 C -0.12 -1.16 5.26 -26.45 -0.14 -1.30 16 5 C -0.03 -0.39 6.33 -27.51 -0.17 -0.56 16 6 C 0.18 3.48 7.65 -155.24 -1.19 2.29 16 7 N -0.47 -11.48 11.22 -6.88 -0.08 -11.55 16 8 C 0.06 1.40 6.30 -82.72 -0.52 0.88 16 9 C 0.09 2.55 5.54 -29.03 -0.16 2.39 16 10 C -0.49 -15.00 9.08 -34.44 -0.31 -15.31 16 11 H 0.06 1.81 7.74 -52.49 -0.41 1.40 16 12 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -28.04 13.29 55.43 0.74 -27.30 16 14 Si 0.89 22.95 29.54 -169.99 -5.02 17.93 16 15 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 18 C -0.09 -1.84 11.53 -16.76 -0.19 -2.04 16 19 N -0.47 -8.11 3.13 -113.76 -0.36 -8.47 16 20 C 0.11 1.34 6.28 -3.92 -0.02 1.31 16 21 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 25 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 26 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.17 2.92 8.06 -52.49 -0.42 2.49 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 LS Contribution 275.51 15.07 4.15 4.15 Total: -1.00 -34.93 275.51 -8.31 -43.25 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: -5.03 Total: -5.27 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -2.72 Total: -12.74 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.30 Total: -47.32 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -34.93 -8.31 -43.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261170944.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.613 kcal (2) G-P(sol) polarization free energy of solvation -34.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds