Wall clock time and date at job start Mon Mar 30 2020 20:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46199 * 2 1 4 4 C 1.53143 * 109.46356 * 119.98683 * 2 1 3 5 5 C 1.53397 * 109.24346 * 189.49695 * 4 2 1 6 6 C 1.51048 * 108.20759 * 311.18580 * 5 4 2 7 7 N 1.30095 * 127.39046 * 195.99146 * 6 5 4 8 8 C 1.34288 * 109.20968 * 179.90761 * 7 6 5 9 9 C 1.50706 * 125.95885 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47238 * 305.02589 * 9 8 7 11 11 H 1.08002 * 119.99880 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99899 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00477 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99932 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47321 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46837 * 120.00227 * 14 12 10 17 17 H 1.48499 * 109.47400 * 239.99871 * 14 12 10 18 18 C 1.34849 * 108.07561 * 0.28314 * 8 7 6 19 19 N 1.35420 * 123.98227 * 15.94070 * 6 5 4 20 20 C 1.46474 * 124.82305 * 0.13071 * 19 6 5 21 21 H 1.09005 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47296 * 299.98762 * 1 2 3 23 23 H 1.09002 * 109.47139 * 59.99090 * 1 2 3 24 24 H 1.09006 * 109.51086 * 309.42574 * 4 2 1 25 25 H 1.09002 * 109.51210 * 69.56329 * 4 2 1 26 26 H 1.09004 * 109.71667 * 191.50843 * 5 4 2 27 27 H 1.08998 * 109.71947 * 70.86193 * 5 4 2 28 28 H 1.08997 * 109.47279 * 65.03138 * 9 8 7 29 29 H 1.08998 * 109.46666 * 185.02677 * 9 8 7 30 30 H 0.96998 * 120.00859 * 179.97438 * 13 12 10 31 31 H 1.08000 * 126.65570 * 179.73320 * 18 8 7 32 32 H 1.08999 * 109.57559 * 136.91756 * 20 19 6 33 33 H 1.08994 * 109.58408 * 257.32530 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0403 -0.7217 1.2506 5 6 3.5555 -0.5151 1.3707 6 6 4.1821 -0.8283 0.0324 7 7 5.4383 -1.0555 -0.2179 8 6 5.5908 -1.2963 -1.5302 9 6 6.8904 -1.6050 -2.2281 10 6 7.8875 -0.5127 -1.9391 11 1 7.6083 0.3213 -1.3123 12 6 9.1563 -0.5782 -2.4748 13 7 9.4961 -1.5935 -3.2384 14 14 10.3921 0.7762 -2.1171 15 1 9.7670 1.7975 -1.2390 16 1 11.5778 0.1970 -1.4358 17 1 10.8145 1.4102 -3.3918 18 6 4.3791 -1.2082 -2.1153 19 7 3.4871 -0.9173 -1.1264 20 6 2.0408 -0.7222 -1.2515 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5136 0.8900 23 1 -0.3633 0.5140 -0.8899 24 1 1.5464 -0.3145 2.1329 25 1 1.8233 -1.7869 1.1703 26 1 3.9588 -1.1839 2.1311 27 1 3.7653 0.5196 1.6417 28 1 7.2795 -2.5570 -1.8672 29 1 6.7199 -1.6662 -3.3029 30 1 10.3886 -1.6395 -3.6156 31 1 4.1579 -1.3440 -3.1637 32 1 1.8287 -0.1185 -2.1339 33 1 1.5480 -1.6902 -1.3415 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261170944.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:52 Heat of formation + Delta-G solvation = 16.315080 kcal Electronic energy + Delta-G solvation = -14631.366823 eV Core-core repulsion = 12270.158189 eV Total energy + Delta-G solvation = -2361.208634 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.10567 -38.22214 -35.33871 -34.06257 -32.85870 -30.87956 -28.75787 -26.92209 -25.18616 -24.24259 -22.25622 -20.89183 -19.86053 -18.40770 -17.63848 -16.74876 -16.49428 -15.53876 -15.36556 -14.93136 -14.73571 -14.36547 -14.25140 -13.84002 -13.49689 -13.17838 -13.09412 -12.65879 -12.56227 -12.31548 -11.94938 -11.81505 -11.70881 -11.61457 -11.45756 -10.69008 -10.51683 -10.25654 -8.98929 -8.16325 -6.26380 1.22581 1.37464 1.39465 1.53376 2.01698 2.30470 2.48128 3.13827 3.45678 3.59105 3.72731 3.78479 4.21097 4.32684 4.42963 4.49312 4.57545 4.67717 4.69431 4.82912 4.96149 5.00558 5.03754 5.14481 5.29802 5.31322 5.41993 5.47458 5.58693 5.77778 5.96845 6.30207 6.51962 6.83000 7.39433 7.45056 8.94128 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.054386 B = 0.006123 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.715361 B = 4571.865472 C = 4763.258813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.102 4.102 3 H 0.074 0.926 4 C -0.109 4.109 5 C -0.031 4.031 6 C 0.188 3.812 7 N -0.532 5.532 8 C 0.002 3.998 9 C 0.101 3.899 10 C -0.515 4.515 11 H 0.042 0.958 12 C 0.001 3.999 13 N -0.933 5.933 14 Si 0.968 3.032 15 H -0.273 1.273 16 H -0.275 1.275 17 H -0.270 1.270 18 C -0.073 4.073 19 N -0.458 5.458 20 C 0.101 3.899 21 H 0.066 0.934 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.110 0.890 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.091 0.909 28 H -0.006 1.006 29 H 0.017 0.983 30 H 0.265 0.735 31 H 0.189 0.811 32 H 0.097 0.903 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.330 3.605 6.912 22.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.121 4.121 3 H 0.093 0.907 4 C -0.147 4.147 5 C -0.070 4.070 6 C -0.075 4.075 7 N -0.252 5.252 8 C -0.126 4.126 9 C 0.063 3.937 10 C -0.553 4.553 11 H 0.061 0.939 12 C -0.196 4.196 13 N -0.574 5.574 14 Si 0.792 3.208 15 H -0.197 1.197 16 H -0.200 1.200 17 H -0.195 1.195 18 C -0.205 4.205 19 N -0.142 5.142 20 C -0.019 4.019 21 H 0.085 0.915 22 H 0.095 0.905 23 H 0.084 0.916 24 H 0.128 0.872 25 H 0.089 0.911 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.012 0.988 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.206 0.794 32 H 0.116 0.884 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.742 3.549 7.332 22.284 hybrid contribution 0.723 0.266 -0.908 1.191 sum -20.019 3.815 6.423 21.367 Atomic orbital electron populations 1.21716 0.90969 1.03178 1.03429 1.21480 0.98422 0.99485 0.92713 0.90749 1.21752 0.92235 1.01561 0.99175 1.20357 0.95693 1.03266 0.87678 1.24148 0.87053 1.04882 0.91447 1.69867 1.17481 1.20587 1.17284 1.21322 0.95858 1.05170 0.90274 1.17314 0.87932 0.95189 0.93219 1.21319 0.97494 1.07060 1.29456 0.93944 1.25911 1.00171 0.98623 0.94924 1.70076 1.20782 1.32007 1.34533 0.85363 0.78366 0.78822 0.78233 1.19737 1.20008 1.19528 1.22448 0.89256 1.13053 0.95735 1.45427 1.09123 1.52824 1.06851 1.22378 0.75281 1.02840 1.01437 0.91468 0.90451 0.91606 0.87172 0.91139 0.88909 0.89027 0.98821 0.96492 0.92604 0.79354 0.88428 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.17 71.98 0.66 -0.53 16 2 C -0.10 -1.57 2.73 -10.66 -0.03 -1.60 16 3 H 0.07 1.29 8.12 -2.38 -0.02 1.27 16 4 C -0.11 -1.75 5.26 30.78 0.16 -1.59 16 5 C -0.03 -0.78 6.33 30.09 0.19 -0.59 16 6 C 0.19 7.12 7.65 138.24 1.06 8.17 16 7 N -0.53 -26.80 11.22 -175.68 -1.97 -28.77 16 8 C 0.00 0.10 6.30 41.41 0.26 0.36 16 9 C 0.10 6.11 5.54 29.10 0.16 6.27 16 10 C -0.51 -32.89 9.08 25.60 0.23 -32.66 16 11 H 0.04 2.77 7.74 -2.91 -0.02 2.75 16 12 C 0.00 0.05 5.46 84.65 0.46 0.51 16 13 N -0.93 -59.54 13.29 21.45 0.28 -59.25 16 14 Si 0.97 47.93 29.54 68.60 2.03 49.95 16 15 H -0.27 -13.35 7.11 99.48 0.71 -12.65 16 16 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 17 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 18 C -0.07 -3.01 11.53 83.22 0.96 -2.05 16 19 N -0.46 -15.37 3.13 -513.83 -1.61 -16.98 16 20 C 0.10 2.07 6.28 86.47 0.54 2.61 16 21 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 22 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 23 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 24 H 0.11 1.11 8.12 -2.38 -0.02 1.09 16 25 H 0.07 1.13 8.12 -2.39 -0.02 1.12 16 26 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 27 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 28 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 29 H 0.02 1.02 8.11 -2.39 -0.02 1.00 16 30 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 31 H 0.19 6.59 8.06 -2.91 -0.02 6.56 16 32 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.10 1.64 8.12 -2.39 -0.02 1.62 16 Total: -1.00 -80.05 275.51 4.46 -75.59 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: 1.07 Total: 0.56 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 4.66 Total: -21.10 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -3.30 Total: -105.00 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.95 kcal Total: -80.05 4.46 -75.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261170944.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.906 kcal (2) G-P(sol) polarization free energy of solvation -80.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds