Wall clock time and date at job start Mon Mar 30 2020 20:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47220 * 2 1 4 4 N 1.40301 * 126.09538 * 90.02171 * 3 2 1 5 5 C 1.31069 * 108.26944 * 179.97438 * 4 3 2 6 6 C 1.39300 * 108.08103 * 0.02562 * 5 4 3 7 7 C 1.34328 * 126.08882 * 270.02079 * 3 2 1 8 8 C 1.50825 * 128.03224 * 0.20901 * 7 3 2 9 9 C 1.53366 * 108.37752 * 163.36248 * 8 7 3 10 10 C 1.53107 * 109.50294 * 49.94312 * 9 8 7 11 11 C 1.50838 * 127.90016 * 180.12319 * 6 5 4 12 12 H 1.08996 * 109.68321 * 283.15663 * 11 6 5 13 13 C 1.50705 * 109.68104 * 43.70744 * 11 6 5 14 14 H 1.08004 * 119.99713 * 35.07157 * 13 11 6 15 15 C 1.37874 * 120.00086 * 215.06487 * 13 11 6 16 16 N 1.31508 * 119.99975 * 5.27861 * 15 13 11 17 17 Si 1.86799 * 119.99855 * 185.27818 * 15 13 11 18 18 H 1.48500 * 109.47169 * 60.00097 * 17 15 13 19 19 H 1.48501 * 109.46993 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47266 * 300.00091 * 17 15 13 21 21 H 1.09000 * 109.47178 * 300.00285 * 1 2 3 22 22 H 1.09003 * 109.47177 * 59.99914 * 1 2 3 23 23 H 1.09001 * 109.47344 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47178 * 239.99715 * 2 1 3 25 25 H 1.09007 * 109.46656 * 119.99582 * 2 1 3 26 26 H 1.07996 * 125.96105 * 180.02562 * 5 4 3 27 27 H 1.08993 * 109.68101 * 283.08503 * 8 7 3 28 28 H 1.09005 * 109.67986 * 43.64039 * 8 7 3 29 29 H 1.09001 * 109.46460 * 169.95419 * 9 8 7 30 30 H 1.09004 * 109.46515 * 289.93103 * 9 8 7 31 31 H 1.08997 * 109.46540 * 49.72611 * 10 9 8 32 32 H 1.08998 * 109.46211 * 169.70824 * 10 9 8 33 33 H 0.97008 * 120.00196 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2943 2.1603 1.1337 5 6 2.7106 3.3366 0.7324 6 6 2.7120 3.3427 -0.6605 7 6 2.2817 2.1273 -1.0855 8 6 2.1396 1.7398 -2.5362 9 6 2.1515 3.0193 -3.3818 10 6 3.3490 3.8854 -2.9816 11 6 3.1126 4.4678 -1.5818 12 1 2.3168 5.2116 -1.6205 13 6 4.3818 5.1071 -1.0801 14 1 5.1408 4.5017 -0.6069 15 6 4.5740 6.4646 -1.2254 16 7 3.6091 7.2176 -1.7064 17 14 6.2051 7.2342 -0.7389 18 1 7.2973 6.6292 -1.5429 19 1 6.1567 8.6970 -0.9902 20 1 6.4578 6.9884 0.7036 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8901 26 1 3.0018 4.1578 1.3705 27 1 2.9715 1.0990 -2.8282 28 1 1.1982 1.2106 -2.6843 29 1 2.2296 2.7567 -4.4368 30 1 1.2289 3.5747 -3.2131 31 1 4.2524 3.2756 -2.9756 32 1 3.4645 4.6987 -3.6979 33 1 3.7445 8.1727 -1.8089 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261172309.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:55 Heat of formation + Delta-G solvation = 55.480768 kcal Electronic energy + Delta-G solvation = -15107.524290 eV Core-core repulsion = 12748.014007 eV Total energy + Delta-G solvation = -2359.510282 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.64043 -35.85984 -34.12797 -32.69054 -30.11321 -28.65529 -27.90629 -24.89114 -23.34795 -21.82000 -20.81257 -19.65771 -17.69078 -16.52814 -15.81579 -14.72376 -14.55545 -14.29046 -13.65092 -13.34678 -12.81952 -12.51150 -12.42749 -12.19360 -11.94884 -11.83452 -11.22703 -11.12192 -10.99355 -10.80536 -10.41528 -10.08472 -10.03454 -9.59548 -9.04248 -8.93692 -8.44793 -8.41933 -7.17423 -5.94444 -3.97055 2.64087 3.16399 3.36659 3.41099 3.44321 3.86516 4.50377 4.83659 5.13217 5.19553 5.32178 5.35056 5.51870 5.60592 5.63738 5.69946 5.94257 6.05980 6.14323 6.28077 6.45124 6.53568 6.68174 6.73511 6.96660 7.14467 7.29653 7.67453 7.67853 7.84340 7.98553 8.02819 8.50036 8.63838 9.12726 9.65812 11.13252 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.040090 B = 0.008619 C = 0.007620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.260991 B = 3247.994606 C = 3673.629828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.135 3.865 3 N -0.381 5.381 4 N -0.325 5.325 5 C 0.064 3.936 6 C -0.177 4.177 7 C 0.042 3.958 8 C -0.043 4.043 9 C -0.115 4.115 10 C -0.104 4.104 11 C 0.101 3.899 12 H 0.067 0.933 13 C -0.501 4.501 14 H 0.053 0.947 15 C 0.065 3.935 16 N -0.895 5.895 17 Si 0.888 3.112 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.277 1.277 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.178 0.822 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.610 -11.387 -1.107 12.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.013 3.987 3 N -0.166 5.166 4 N -0.147 5.147 5 C -0.120 4.120 6 C -0.188 4.188 7 C -0.083 4.083 8 C -0.082 4.082 9 C -0.153 4.153 10 C -0.142 4.142 11 C 0.082 3.918 12 H 0.085 0.915 13 C -0.539 4.539 14 H 0.071 0.929 15 C -0.137 4.137 16 N -0.533 5.533 17 Si 0.716 3.284 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.087 0.913 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.195 0.805 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.959 -12.067 -0.136 13.046 hybrid contribution 1.102 0.932 -0.354 1.486 sum -3.856 -11.134 -0.490 11.793 Atomic orbital electron populations 1.22179 0.95182 1.02133 1.03131 1.21384 0.94590 0.79512 1.03232 1.48153 1.53403 1.11212 1.03797 1.77328 1.24773 1.04869 1.07752 1.23583 0.98046 0.94671 0.95709 1.20856 1.07043 0.96498 0.94405 1.20873 1.04236 0.93236 0.89984 1.20170 1.00647 0.98801 0.88546 1.21643 1.01189 0.95282 0.97206 1.21783 0.94842 0.97385 1.00216 1.17531 0.97356 0.89489 0.87448 0.91526 1.21008 1.02383 0.92267 1.38292 0.92908 1.24969 0.96302 0.97307 0.95090 1.69906 1.31592 1.05537 1.46286 0.86726 0.84611 0.77999 0.79073 1.20322 1.21404 1.20266 0.91836 0.92166 0.91285 0.89945 0.89663 0.80509 0.91252 0.92061 0.92826 0.92172 0.93696 0.92583 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.24 37.16 0.38 -1.53 16 2 C 0.14 1.79 7.01 -4.04 -0.03 1.76 16 3 N -0.38 -7.07 3.60 -57.13 -0.21 -7.28 16 4 N -0.33 -6.87 12.59 30.54 0.38 -6.49 16 5 C 0.06 1.44 11.56 -17.48 -0.20 1.24 16 6 C -0.18 -4.07 5.42 -105.05 -0.57 -4.64 16 7 C 0.04 0.83 6.73 -82.33 -0.55 0.28 16 8 C -0.04 -0.69 5.83 -27.63 -0.16 -0.85 16 9 C -0.12 -2.02 5.90 -26.49 -0.16 -2.18 16 10 C -0.10 -2.28 5.20 -26.45 -0.14 -2.41 16 11 C 0.10 2.53 2.64 -92.62 -0.24 2.28 16 12 H 0.07 1.86 7.24 -51.93 -0.38 1.48 16 13 C -0.50 -13.67 7.96 -34.44 -0.27 -13.95 16 14 H 0.05 1.46 7.82 -52.48 -0.41 1.05 16 15 C 0.06 1.78 5.45 -17.82 -0.10 1.69 16 16 N -0.89 -25.70 12.77 55.43 0.71 -24.99 16 17 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 0.91 7.90 -51.93 -0.41 0.50 16 25 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 26 H 0.18 3.84 8.06 -52.49 -0.42 3.41 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16 31 H 0.04 0.98 8.08 -51.93 -0.42 0.56 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 274.42 15.07 4.14 4.14 Total: -1.00 -30.26 274.42 -7.02 -37.28 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.98 Total: -0.63 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -2.04 Total: -18.32 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.89 Total: -38.76 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.26 -7.02 -37.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261172309.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.764 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds