Wall clock time and date at job start Mon Mar 30 2020 20:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47415 * 2 1 4 4 C 1.46495 * 120.00509 * 270.00643 * 3 2 1 5 5 C 1.52998 * 109.47158 * 269.99782 * 4 3 2 6 6 C 1.38372 * 119.99672 * 90.00056 * 3 2 1 7 7 C 1.39714 * 119.42761 * 5.00245 * 6 3 2 8 8 C 1.36562 * 119.49146 * 179.97438 * 7 6 3 9 9 C 1.41325 * 118.40876 * 0.27661 * 8 7 6 10 10 C 1.41194 * 120.57202 * 179.70157 * 9 8 7 11 11 H 1.07999 * 120.00287 * 155.71216 * 10 9 8 12 12 C 1.39874 * 120.00081 * 335.71779 * 10 9 8 13 13 N 1.30902 * 119.99356 * 343.31378 * 12 10 9 14 14 Si 1.86801 * 120.00108 * 163.31300 * 12 10 9 15 15 H 1.48503 * 109.46932 * 60.00367 * 14 12 10 16 16 H 1.48498 * 109.46831 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47135 * 299.99889 * 14 12 10 18 18 C 1.40761 * 118.85948 * 359.47815 * 9 8 7 19 19 N 1.31488 * 120.36464 * 0.53445 * 18 9 8 20 20 H 1.08995 * 109.46997 * 59.99228 * 1 2 3 21 21 H 1.08997 * 109.47005 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46981 * 299.99432 * 1 2 3 23 23 H 1.09009 * 109.46605 * 240.00402 * 2 1 3 24 24 H 1.08998 * 109.47447 * 120.01028 * 2 1 3 25 25 H 1.08997 * 109.47353 * 29.99438 * 4 3 2 26 26 H 1.08999 * 109.47253 * 149.99596 * 4 3 2 27 27 H 1.08999 * 109.47210 * 300.00155 * 5 4 3 28 28 H 1.08999 * 109.47191 * 59.99775 * 5 4 3 29 29 H 1.09001 * 109.47626 * 180.02562 * 5 4 3 30 30 H 1.07999 * 120.25428 * 0.02562 * 7 6 3 31 31 H 1.08000 * 120.79580 * 180.02562 * 8 7 6 32 32 H 0.97001 * 119.99136 * 180.02562 * 13 12 10 33 33 H 1.07997 * 119.82019 * 180.24542 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.7075 1.8315 -1.7104 6 6 2.2491 2.0334 1.1984 7 6 2.1135 1.3318 2.3989 8 6 2.3413 1.9740 3.5824 9 6 2.7036 3.3396 3.5474 10 6 2.9435 4.0498 4.7439 11 1 3.5749 4.9260 4.7345 12 6 2.3636 3.6186 5.9415 13 7 1.3592 2.7795 5.9173 14 14 3.0226 4.2400 7.5752 15 1 2.8986 5.7188 7.6287 16 1 2.2414 3.6377 8.6853 17 1 4.4512 3.8577 7.7104 18 6 2.8256 3.9784 2.2990 19 7 2.5952 3.3148 1.1875 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5140 0.8899 25 1 1.5817 1.6879 -2.0283 26 1 2.0955 3.1411 -1.1382 27 1 4.3883 2.2155 -0.9508 28 1 3.8744 0.7623 -1.8408 29 1 3.8893 2.3458 -2.6541 30 1 1.8315 0.2893 2.3911 31 1 2.2430 1.4519 4.5227 32 1 0.9568 2.4808 6.7478 33 1 3.1055 5.0205 2.2540 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261205572.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:51 Heat of formation + Delta-G solvation = 29.556366 kcal Electronic energy + Delta-G solvation = -14776.053844 eV Core-core repulsion = 12415.419395 eV Total energy + Delta-G solvation = -2360.634449 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.74861 -36.25211 -33.69842 -31.88887 -30.32509 -30.05414 -27.90860 -24.89807 -23.40932 -22.06167 -21.15433 -19.62383 -17.21655 -16.41676 -15.63246 -14.95947 -14.18648 -13.98734 -13.61909 -13.27668 -12.99462 -12.62059 -12.21499 -11.98119 -11.73832 -11.54073 -11.50010 -11.33288 -11.12786 -11.02261 -10.58788 -10.49815 -10.39137 -9.72951 -9.32469 -8.53278 -8.18822 -7.90380 -6.75396 -6.52204 -4.14900 2.79524 3.02954 3.09703 3.13011 3.32768 3.93562 3.99431 4.73491 5.31397 5.50593 5.60194 5.72122 5.74110 5.87237 5.96173 5.97948 5.99694 6.19236 6.31212 6.42104 6.50555 6.58771 6.71670 6.76926 6.90271 7.20028 7.36932 7.49497 7.75827 7.95231 8.23098 8.43789 8.67316 8.87998 8.94345 9.76491 10.26860 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.046325 B = 0.007240 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.274616 B = 3866.416493 C = 4289.775916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.134 3.866 3 N -0.624 5.624 4 C 0.137 3.863 5 C -0.163 4.163 6 C 0.282 3.718 7 C -0.203 4.203 8 C -0.093 4.093 9 C 0.030 3.970 10 C -0.458 4.458 11 H 0.077 0.923 12 C 0.074 3.926 13 N -0.807 5.807 14 Si 0.908 3.092 15 H -0.266 1.266 16 H -0.280 1.280 17 H -0.265 1.265 18 C 0.009 3.991 19 N -0.518 5.518 20 H 0.049 0.951 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.279 0.721 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.192 -4.482 -6.736 8.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.009 3.991 3 N -0.344 5.344 4 C 0.013 3.987 5 C -0.222 4.222 6 C 0.051 3.949 7 C -0.227 4.227 8 C -0.120 4.120 9 C 0.025 3.975 10 C -0.490 4.490 11 H 0.095 0.905 12 C -0.142 4.142 13 N -0.434 5.434 14 Si 0.733 3.267 15 H -0.191 1.191 16 H -0.205 1.205 17 H -0.190 1.190 18 C -0.149 4.149 19 N -0.233 5.233 20 H 0.068 0.932 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.145 0.855 32 H 0.090 0.910 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.086 -4.202 -7.445 8.550 hybrid contribution 0.048 -0.203 1.665 1.678 sum 0.134 -4.405 -5.780 7.269 Atomic orbital electron populations 1.22251 0.97594 1.00811 1.02308 1.21101 0.93162 0.83428 1.01371 1.45619 1.74279 1.12098 1.02435 1.20959 0.94315 0.98488 0.84917 1.22162 0.99129 1.00454 1.00472 1.17727 1.02964 0.89479 0.84706 1.20869 1.09955 0.99164 0.92711 1.21308 0.99827 0.94347 0.96515 1.18350 0.93388 0.92264 0.93518 1.19290 1.26784 1.11323 0.91557 0.90530 1.25844 0.93187 0.94051 1.01136 1.69813 1.16865 1.27169 1.29596 0.86373 0.79944 0.79859 0.80534 1.19103 1.20505 1.18995 1.22197 1.07653 0.97789 0.87240 1.66536 1.16988 1.06954 1.32796 0.93156 0.92767 0.92197 0.92208 0.91200 0.93191 0.90376 0.92378 0.93776 0.93101 0.88322 0.85532 0.91039 0.85701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 10.24 37.16 0.38 -2.06 16 2 C 0.13 2.07 5.95 -4.04 -0.02 2.04 16 3 N -0.62 -11.80 2.57 -173.76 -0.45 -12.24 16 4 C 0.14 2.29 6.18 -4.05 -0.02 2.26 16 5 C -0.16 -2.46 10.24 37.16 0.38 -2.08 16 6 C 0.28 6.53 7.37 -155.12 -1.14 5.38 16 7 C -0.20 -4.80 9.19 -39.64 -0.36 -5.16 16 8 C -0.09 -2.43 8.74 -39.01 -0.34 -2.77 16 9 C 0.03 0.80 5.59 -106.65 -0.60 0.20 16 10 C -0.46 -12.18 9.07 -37.85 -0.34 -12.53 16 11 H 0.08 1.94 7.90 -52.49 -0.41 1.53 16 12 C 0.07 1.86 5.19 -17.34 -0.09 1.77 16 13 N -0.81 -21.01 10.91 55.54 0.61 -20.40 16 14 Si 0.91 18.84 29.59 -169.99 -5.03 13.81 16 15 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 16 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 18 C 0.01 0.23 10.97 -16.75 -0.18 0.05 16 19 N -0.52 -12.74 9.02 -11.78 -0.11 -12.84 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.06 0.78 8.07 -51.92 -0.42 0.36 16 24 H 0.07 1.10 5.93 -51.93 -0.31 0.79 16 25 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 26 H 0.08 1.45 7.27 -51.93 -0.38 1.07 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.10 2.07 5.97 -52.49 -0.31 1.76 16 31 H 0.13 3.37 6.20 -52.49 -0.33 3.04 16 32 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 33 H 0.13 2.97 8.06 -52.49 -0.42 2.55 16 LS Contribution 276.76 15.07 4.17 4.17 Total: -1.00 -28.16 276.76 -7.83 -35.99 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.67 Total: 4.40 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -2.35 Total: -12.88 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.05 Total: -45.49 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.16 -7.83 -35.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261205572.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.546 kcal (2) G-P(sol) polarization free energy of solvation -28.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds