Wall clock time and date at job start Mon Mar 30 2020 20:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47415 * 2 1 4 4 C 1.46495 * 120.00509 * 270.00643 * 3 2 1 5 5 C 1.52998 * 109.47158 * 269.99782 * 4 3 2 6 6 C 1.38372 * 119.99672 * 90.00056 * 3 2 1 7 7 C 1.39714 * 119.42761 * 5.00245 * 6 3 2 8 8 C 1.36562 * 119.49146 * 179.97438 * 7 6 3 9 9 C 1.41325 * 118.40876 * 0.27661 * 8 7 6 10 10 C 1.41194 * 120.57202 * 179.70157 * 9 8 7 11 11 H 1.07999 * 120.00287 * 155.71216 * 10 9 8 12 12 C 1.39874 * 120.00081 * 335.71779 * 10 9 8 13 13 N 1.30902 * 119.99356 * 343.31378 * 12 10 9 14 14 Si 1.86801 * 120.00108 * 163.31300 * 12 10 9 15 15 H 1.48503 * 109.46932 * 60.00367 * 14 12 10 16 16 H 1.48498 * 109.46831 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47135 * 299.99889 * 14 12 10 18 18 C 1.40761 * 118.85948 * 359.47815 * 9 8 7 19 19 N 1.31488 * 120.36464 * 0.53445 * 18 9 8 20 20 H 1.08995 * 109.46997 * 59.99228 * 1 2 3 21 21 H 1.08997 * 109.47005 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46981 * 299.99432 * 1 2 3 23 23 H 1.09009 * 109.46605 * 240.00402 * 2 1 3 24 24 H 1.08998 * 109.47447 * 120.01028 * 2 1 3 25 25 H 1.08997 * 109.47353 * 29.99438 * 4 3 2 26 26 H 1.08999 * 109.47253 * 149.99596 * 4 3 2 27 27 H 1.08999 * 109.47210 * 300.00155 * 5 4 3 28 28 H 1.08999 * 109.47191 * 59.99775 * 5 4 3 29 29 H 1.09001 * 109.47626 * 180.02562 * 5 4 3 30 30 H 1.07999 * 120.25428 * 0.02562 * 7 6 3 31 31 H 1.08000 * 120.79580 * 180.02562 * 8 7 6 32 32 H 0.97001 * 119.99136 * 180.02562 * 13 12 10 33 33 H 1.07997 * 119.82019 * 180.24542 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.7075 1.8315 -1.7104 6 6 2.2491 2.0334 1.1984 7 6 2.1135 1.3318 2.3989 8 6 2.3413 1.9740 3.5824 9 6 2.7036 3.3396 3.5474 10 6 2.9435 4.0498 4.7439 11 1 3.5749 4.9260 4.7345 12 6 2.3636 3.6186 5.9415 13 7 1.3592 2.7795 5.9173 14 14 3.0226 4.2400 7.5752 15 1 2.8986 5.7188 7.6287 16 1 2.2414 3.6377 8.6853 17 1 4.4512 3.8577 7.7104 18 6 2.8256 3.9784 2.2990 19 7 2.5952 3.3148 1.1875 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5140 0.8899 25 1 1.5817 1.6879 -2.0283 26 1 2.0955 3.1411 -1.1382 27 1 4.3883 2.2155 -0.9508 28 1 3.8744 0.7623 -1.8408 29 1 3.8893 2.3458 -2.6541 30 1 1.8315 0.2893 2.3911 31 1 2.2430 1.4519 4.5227 32 1 0.9568 2.4808 6.7478 33 1 3.1055 5.0205 2.2540 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261205572.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:51 Heat of formation + Delta-G solvation = 15.036032 kcal Electronic energy + Delta-G solvation = -14776.683493 eV Core-core repulsion = 12415.419395 eV Total energy + Delta-G solvation = -2361.264098 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.54420 -37.84743 -35.56778 -33.29051 -32.13175 -31.76643 -29.49379 -26.69519 -24.82680 -23.72182 -22.92665 -21.22914 -19.15988 -18.02503 -17.30304 -16.65586 -15.80902 -15.68312 -15.20973 -14.81177 -14.42351 -14.13447 -13.78032 -13.57951 -13.43314 -13.17396 -13.06546 -12.80913 -12.70592 -12.46391 -12.21770 -11.84347 -11.71201 -11.57106 -11.16689 -10.29579 -10.13109 -9.81413 -8.62134 -8.29372 -6.11039 0.90492 1.14550 1.40908 1.51794 1.58849 2.24650 2.47787 2.82887 3.80578 4.01303 4.20024 4.34831 4.39652 4.56379 4.61008 4.66473 4.71770 4.81519 4.89007 4.94987 5.03709 5.06516 5.21096 5.28563 5.35803 5.42243 5.48516 5.62138 5.93153 5.99743 6.49262 6.62684 6.81008 6.93451 7.07737 7.86329 8.40400 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.046325 B = 0.007240 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.274616 B = 3866.416493 C = 4289.775916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.126 3.874 3 N -0.624 5.624 4 C 0.132 3.868 5 C -0.154 4.154 6 C 0.289 3.711 7 C -0.208 4.208 8 C -0.108 4.108 9 C -0.002 4.002 10 C -0.494 4.494 11 H 0.076 0.924 12 C 0.033 3.967 13 N -0.839 5.839 14 Si 0.983 3.017 15 H -0.261 1.261 16 H -0.269 1.269 17 H -0.262 1.262 18 C -0.005 4.005 19 N -0.529 5.529 20 H 0.056 0.944 21 H 0.084 0.916 22 H 0.027 0.973 23 H 0.095 0.905 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.024 0.976 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.286 0.714 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.108 -5.609 -7.741 9.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.003 3.997 3 N -0.344 5.344 4 C 0.009 3.991 5 C -0.212 4.212 6 C 0.055 3.945 7 C -0.232 4.232 8 C -0.135 4.135 9 C -0.007 4.007 10 C -0.525 4.525 11 H 0.094 0.906 12 C -0.180 4.180 13 N -0.466 5.466 14 Si 0.804 3.196 15 H -0.185 1.185 16 H -0.194 1.194 17 H -0.186 1.186 18 C -0.162 4.162 19 N -0.245 5.245 20 H 0.075 0.925 21 H 0.102 0.898 22 H 0.046 0.954 23 H 0.113 0.887 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.141 0.859 31 H 0.133 0.867 32 H 0.096 0.904 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.005 -5.346 -8.496 10.038 hybrid contribution 0.024 0.051 1.784 1.785 sum 0.018 -5.295 -6.712 8.549 Atomic orbital electron populations 1.22173 0.96568 1.02418 1.01032 1.21406 0.93910 0.81538 1.02865 1.45975 1.73423 1.13298 1.01703 1.21143 0.96218 0.97202 0.84585 1.22059 0.97008 1.01617 1.00552 1.18111 1.00835 0.89106 0.86428 1.21099 1.09484 1.00364 0.92248 1.21323 1.00764 0.94399 0.97004 1.18638 0.94753 0.92997 0.94283 1.19537 1.28104 1.12187 0.92664 0.90560 1.26685 0.92867 0.94033 1.04398 1.69869 1.17706 1.28171 1.30899 0.85246 0.79212 0.79391 0.75789 1.18514 1.19391 1.18630 1.22361 1.08055 0.98361 0.87402 1.66625 1.17867 1.07770 1.32253 0.92464 0.89763 0.95369 0.88684 0.91694 0.89738 0.92800 0.95641 0.92203 0.90545 0.85873 0.86722 0.90366 0.85061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 10.24 71.98 0.74 -3.46 16 2 C 0.13 3.49 5.95 86.38 0.51 4.00 16 3 N -0.62 -22.41 2.57 -703.66 -1.81 -24.22 16 4 C 0.13 4.06 6.18 86.38 0.53 4.60 16 5 C -0.15 -4.23 10.24 71.98 0.74 -3.49 16 6 C 0.29 13.28 7.37 133.32 0.98 14.27 16 7 C -0.21 -9.88 9.19 22.23 0.20 -9.67 16 8 C -0.11 -5.79 8.74 22.64 0.20 -5.59 16 9 C 0.00 -0.09 5.59 -21.18 -0.12 -0.21 16 10 C -0.49 -27.12 9.07 23.39 0.21 -26.91 16 11 H 0.08 4.02 7.90 -2.91 -0.02 3.99 16 12 C 0.03 1.69 5.19 85.23 0.44 2.13 16 13 N -0.84 -44.53 10.91 21.82 0.24 -44.29 16 14 Si 0.98 38.88 29.59 68.60 2.03 40.91 16 15 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 16 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 17 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 18 C 0.00 -0.26 10.97 85.36 0.94 0.68 16 19 N -0.53 -26.40 9.02 -191.19 -1.72 -28.13 16 20 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.09 2.03 8.07 -2.38 -0.02 2.01 16 24 H 0.06 1.87 5.93 -2.39 -0.01 1.86 16 25 H 0.08 2.05 8.07 -2.39 -0.02 2.03 16 26 H 0.05 1.93 7.27 -2.39 -0.02 1.92 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.12 5.09 5.97 -2.91 -0.02 5.08 16 31 H 0.11 6.33 6.20 -2.91 -0.02 6.31 16 32 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 33 H 0.13 6.51 8.06 -2.91 -0.02 6.49 16 Total: -1.00 -62.16 276.76 5.20 -56.96 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 1.08 Total: 22.41 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: 5.38 Total: -23.65 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -3.30 Total: -96.63 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -62.16 5.20 -56.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261205572.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.996 kcal (2) G-P(sol) polarization free energy of solvation -62.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds