Wall clock time and date at job start Mon Mar 30 2020 20:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.43309 * 2 1 4 4 C 1.53117 * 109.40180 * 240.12158 * 2 1 3 5 5 C 1.53489 * 109.30859 * 170.02923 * 4 2 1 6 6 C 1.50709 * 108.11346 * 48.49919 * 5 4 2 7 7 C 1.33860 * 128.68269 * 163.85324 * 6 5 4 8 8 C 1.50703 * 126.09921 * 0.77424 * 7 6 5 9 9 C 1.50708 * 109.46925 * 269.70755 * 8 7 6 10 10 H 1.07991 * 119.99789 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00008 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00089 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99938 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 269.99556 * 13 11 9 15 15 H 1.48503 * 109.47261 * 149.99737 * 13 11 9 16 16 H 1.48500 * 109.47454 * 29.99730 * 13 11 9 17 17 N 1.34420 * 107.80213 * 180.50086 * 7 6 5 18 18 C 1.30783 * 109.31891 * 0.22953 * 17 7 6 19 19 N 1.34406 * 108.55452 * 359.93304 * 18 17 7 20 20 C 1.46476 * 128.44540 * 180.19668 * 19 18 17 21 21 H 1.08998 * 109.47513 * 300.08888 * 1 2 3 22 22 H 1.09005 * 109.46881 * 60.09682 * 1 2 3 23 23 H 1.09008 * 109.46671 * 180.08725 * 1 2 3 24 24 H 1.08998 * 109.49739 * 289.98519 * 4 2 1 25 25 H 1.09003 * 109.49893 * 50.04177 * 4 2 1 26 26 H 1.09009 * 109.74152 * 168.33496 * 5 4 2 27 27 H 1.09001 * 109.74495 * 288.99845 * 5 4 2 28 28 H 1.08994 * 109.47874 * 149.70937 * 8 7 6 29 29 H 1.09000 * 109.47408 * 29.70762 * 8 7 6 30 30 H 0.96997 * 119.99848 * 180.02562 * 12 11 9 31 31 H 1.08001 * 125.72616 * 179.90671 * 18 17 7 32 32 H 1.09007 * 109.59750 * 282.44248 * 20 19 18 33 33 H 1.08998 * 109.60216 * 42.75430 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8926 1.0280 0.0000 4 6 2.0386 -0.7195 -1.2523 5 6 3.5528 -0.5044 -1.3813 6 6 4.1843 -0.8049 -0.0463 7 6 5.4719 -1.0363 0.2370 8 6 6.6126 -1.0311 -0.7478 9 6 6.8002 -2.4181 -1.3067 10 1 6.1574 -3.2227 -0.9815 11 6 7.7917 -2.6596 -2.2338 12 7 7.9550 -3.8698 -2.7218 13 14 8.9031 -1.2677 -2.7967 14 1 8.3023 -0.6024 -3.9807 15 1 10.2356 -1.8138 -3.1589 16 1 9.0549 -0.2802 -1.6980 17 7 5.5669 -1.2682 1.5577 18 6 4.3779 -1.1919 2.0969 19 7 3.4877 -0.9066 1.1311 20 6 2.0399 -0.7207 1.2530 21 1 -0.3634 0.5152 0.8891 22 1 -0.3633 0.5124 -0.8909 23 1 -0.3633 -1.0278 0.0016 24 1 1.8282 -1.7858 -1.1699 25 1 1.5370 -0.3167 -2.1323 26 1 3.9563 -1.1736 -2.1414 27 1 3.7556 0.5305 -1.6570 28 1 7.5263 -0.7158 -0.2440 29 1 6.3884 -0.3394 -1.5599 30 1 8.6528 -4.0398 -3.3738 31 1 4.1494 -1.3348 3.1428 32 1 1.5526 -1.6919 1.3400 33 1 1.8213 -0.1214 2.1368 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261209916.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:02 Heat of formation + Delta-G solvation = 19.468669 kcal Electronic energy + Delta-G solvation = -14928.260896 eV Core-core repulsion = 12567.189012 eV Total energy + Delta-G solvation = -2361.071884 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.13532 -38.16578 -35.55498 -34.00966 -32.74645 -31.54184 -28.38080 -27.14175 -24.61264 -24.49995 -22.03920 -21.06241 -19.78520 -18.96089 -17.66137 -16.67674 -16.25752 -15.69974 -15.36664 -15.09595 -14.84974 -14.43062 -14.20281 -13.84690 -13.47953 -13.31863 -13.19441 -12.54576 -12.43529 -12.31774 -11.97196 -11.85206 -11.68034 -11.58094 -11.53044 -10.77868 -10.62946 -10.18200 -8.94219 -8.27540 -6.31152 1.25943 1.35505 1.39644 1.52710 2.04606 2.35203 2.38023 3.06018 3.53819 3.69828 3.81995 3.87823 4.07344 4.36249 4.37515 4.47016 4.55549 4.56665 4.73222 4.83425 4.96589 4.98652 5.03396 5.08116 5.14285 5.30161 5.41148 5.45339 5.56251 5.61470 5.94373 6.32206 6.56646 6.72054 7.30828 7.36023 8.89832 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.039299 B = 0.007851 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.314016 B = 3565.690466 C = 3888.622614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.099 4.099 3 H 0.079 0.921 4 C -0.112 4.112 5 C -0.044 4.044 6 C -0.035 4.035 7 C 0.002 3.998 8 C 0.071 3.929 9 C -0.509 4.509 10 H 0.016 0.984 11 C 0.007 3.993 12 N -0.951 5.951 13 Si 0.953 3.047 14 H -0.255 1.255 15 H -0.280 1.280 16 H -0.254 1.254 17 N -0.546 5.546 18 C 0.175 3.825 19 N -0.458 5.458 20 C 0.103 3.897 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.096 0.904 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.015 0.985 29 H 0.036 0.964 30 H 0.268 0.732 31 H 0.242 0.758 32 H 0.090 0.910 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.540 11.379 5.657 21.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.118 4.118 3 H 0.097 0.903 4 C -0.150 4.150 5 C -0.083 4.083 6 C -0.148 4.148 7 C -0.125 4.125 8 C 0.033 3.967 9 C -0.548 4.548 10 H 0.034 0.966 11 C -0.190 4.190 12 N -0.592 5.592 13 Si 0.775 3.225 14 H -0.179 1.179 15 H -0.206 1.206 16 H -0.178 1.178 17 N -0.267 5.267 18 C -0.107 4.107 19 N -0.143 5.143 20 C -0.017 4.017 21 H 0.093 0.907 22 H 0.089 0.911 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.114 0.886 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.033 0.967 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.258 0.742 32 H 0.108 0.892 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.891 11.120 6.007 21.096 hybrid contribution 0.355 -0.172 -0.611 0.727 sum -16.537 10.947 5.396 20.553 Atomic orbital electron populations 1.21724 0.91191 1.02916 1.03511 1.21430 0.98198 0.99573 0.92562 0.90299 1.21721 0.93103 1.00736 0.99418 1.20207 0.95866 1.02123 0.90067 1.20999 0.91836 1.11787 0.90207 1.20510 0.94796 1.05540 0.91651 1.17798 0.91538 0.95532 0.91844 1.21060 1.16265 0.94234 1.23199 0.96601 1.25974 0.98590 0.98587 0.95805 1.70066 1.34640 1.22892 1.31638 0.85622 0.77948 0.79280 0.79620 1.17917 1.20558 1.17834 1.70254 1.25320 1.22304 1.08783 1.25408 0.83474 1.04489 0.97314 1.45476 1.09374 1.52700 1.06720 1.22382 0.75126 1.02835 1.01367 0.90700 0.91053 0.91989 0.92631 0.88567 0.91714 0.89531 0.96711 0.94555 0.92362 0.74226 0.89165 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.16 71.98 0.66 -0.80 16 2 C -0.10 -1.72 2.71 -10.66 -0.03 -1.75 16 3 H 0.08 1.42 8.11 -2.38 -0.02 1.40 16 4 C -0.11 -2.57 5.26 30.80 0.16 -2.41 16 5 C -0.04 -1.45 6.00 30.01 0.18 -1.27 16 6 C -0.03 -1.38 6.56 40.73 0.27 -1.11 16 7 C 0.00 0.11 6.28 41.17 0.26 0.37 16 8 C 0.07 3.88 4.43 29.11 0.13 4.00 16 9 C -0.51 -32.33 9.65 25.60 0.25 -32.08 16 10 H 0.02 1.13 7.98 -2.92 -0.02 1.10 16 11 C 0.01 0.42 5.47 84.65 0.46 0.88 16 12 N -0.95 -62.47 13.96 21.45 0.30 -62.17 16 13 Si 0.95 46.58 27.47 68.60 1.88 48.47 16 14 H -0.25 -11.51 7.11 99.48 0.71 -10.80 16 15 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 16 H -0.25 -11.98 6.54 99.48 0.65 -11.33 16 17 N -0.55 -25.87 11.27 -188.96 -2.13 -28.00 16 18 C 0.18 6.07 12.66 180.38 2.28 8.35 16 19 N -0.46 -14.50 3.13 -514.85 -1.61 -16.12 16 20 C 0.10 1.98 6.30 86.48 0.54 2.53 16 21 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 22 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 23 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 24 H 0.05 1.39 8.12 -2.39 -0.02 1.37 16 25 H 0.10 1.74 8.11 -2.39 -0.02 1.72 16 26 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 27 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.01 0.82 7.20 -2.39 -0.02 0.80 16 29 H 0.04 1.83 7.44 -2.39 -0.02 1.81 16 30 H 0.27 16.21 8.31 -92.71 -0.77 15.44 16 31 H 0.24 5.56 8.06 -2.91 -0.02 5.54 16 32 H 0.09 1.56 8.13 -2.38 -0.02 1.54 16 33 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -81.33 271.37 4.63 -76.70 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: 1.02 Total: 4.41 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 5.17 Total: -23.30 kcal Atomic # 7 Polarization: -102.84 SS G_CDS: -3.44 Total: -106.28 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.88 Total: 48.47 kcal Total: -81.33 4.63 -76.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261209916.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.172 kcal (2) G-P(sol) polarization free energy of solvation -81.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds