Wall clock time and date at job start Mon Mar 30 2020 20:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.42499 * 2 1 4 4 C 1.53110 * 109.43355 * 119.90084 * 2 1 3 5 5 C 1.53496 * 109.31194 * 189.93212 * 4 2 1 6 6 C 1.50713 * 108.05681 * 311.30243 * 5 4 2 7 7 C 1.33857 * 128.67558 * 195.74761 * 6 5 4 8 8 C 1.50697 * 126.10387 * 359.93221 * 7 6 5 9 9 C 1.50703 * 109.47071 * 270.01887 * 8 7 6 10 10 H 1.08002 * 119.99881 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00326 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99665 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00291 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47124 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47302 * 120.00287 * 13 11 9 16 16 H 1.48501 * 109.47526 * 240.00414 * 13 11 9 17 17 N 1.34424 * 107.79844 * 179.97438 * 7 6 5 18 18 C 1.30790 * 109.31853 * 359.97438 * 17 7 6 19 19 N 1.34405 * 108.55185 * 0.06071 * 18 17 7 20 20 C 1.46472 * 128.44300 * 179.82374 * 19 18 17 21 21 H 1.09003 * 109.47171 * 300.09151 * 1 2 3 22 22 H 1.08994 * 109.47613 * 60.09926 * 1 2 3 23 23 H 1.09001 * 109.46994 * 180.09669 * 1 2 3 24 24 H 1.09003 * 109.49553 * 69.98459 * 4 2 1 25 25 H 1.09005 * 109.52688 * 309.90037 * 4 2 1 26 26 H 1.08996 * 109.74327 * 191.66151 * 5 4 2 27 27 H 1.08997 * 109.74210 * 70.94351 * 5 4 2 28 28 H 1.08996 * 109.47515 * 30.02009 * 8 7 6 29 29 H 1.09000 * 109.47482 * 150.02245 * 8 7 6 30 30 H 0.97003 * 120.00286 * 179.97438 * 12 11 9 31 31 H 1.08002 * 125.72424 * 180.02562 * 18 17 7 32 32 H 1.09000 * 109.60265 * 77.60448 * 20 19 18 33 33 H 1.08999 * 109.73424 * 317.19748 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8925 1.0280 0.0000 4 6 2.0394 -0.7198 1.2517 5 6 3.5539 -0.5051 1.3797 6 6 4.1835 -0.8108 0.0449 7 6 5.4716 -1.0370 -0.2402 8 6 6.6127 -1.0342 0.7441 9 6 7.1863 0.3558 0.8443 10 1 6.7661 1.1571 0.2545 11 6 8.2466 0.6048 1.6896 12 7 8.7579 -0.3709 2.4082 13 14 8.9571 2.3278 1.8143 14 1 8.2091 3.2383 0.9106 15 1 8.8384 2.8122 3.2131 16 1 10.3882 2.3031 1.4189 17 7 5.5659 -1.2663 -1.5614 18 6 4.3765 -1.1891 -2.0999 19 7 3.4869 -0.9059 -1.1331 20 6 2.0390 -0.7202 -1.2537 21 1 -0.3634 0.5153 0.8892 22 1 -0.3634 0.5122 -0.8908 23 1 -0.3633 -1.0277 0.0017 24 1 1.8288 -1.7861 1.1692 25 1 1.5392 -0.3171 2.1325 26 1 3.9577 -1.1745 2.1392 27 1 3.7572 0.5299 1.6544 28 1 6.2495 -1.3488 1.7224 29 1 7.3866 -1.7230 0.4052 30 1 9.5041 -0.1958 3.0027 31 1 4.1477 -1.3289 -3.1461 32 1 1.5518 -1.6913 -1.3414 33 1 1.8173 -0.1189 -2.1354 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261209917.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:05 Heat of formation + Delta-G solvation = 16.931020 kcal Electronic energy + Delta-G solvation = -14900.961189 eV Core-core repulsion = 12539.779264 eV Total energy + Delta-G solvation = -2361.181925 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.10720 -38.15170 -35.58427 -33.93189 -32.73380 -31.09852 -28.21248 -27.09880 -24.99176 -24.50833 -22.01633 -21.08467 -19.77776 -18.51765 -17.63257 -16.66241 -16.41489 -15.70713 -15.33646 -15.08604 -14.50970 -14.35011 -14.14804 -13.90317 -13.26600 -13.24135 -13.14519 -12.61881 -12.58413 -12.46080 -11.94621 -11.81016 -11.68198 -11.56839 -11.45277 -10.68181 -10.51799 -10.15903 -8.97011 -8.15963 -6.29094 1.27809 1.37669 1.39427 1.52580 2.06626 2.31301 2.50588 3.12460 3.54836 3.71043 3.83154 3.90009 4.08105 4.37822 4.39470 4.50620 4.56762 4.62416 4.75242 4.89286 4.92955 5.03342 5.08997 5.16021 5.30567 5.32616 5.41926 5.57478 5.62487 5.76894 5.97849 6.27532 6.60181 6.80282 7.37549 7.40495 8.93243 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.035820 B = 0.007690 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.506443 B = 3640.014459 C = 3949.577625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.103 4.103 3 H 0.066 0.934 4 C -0.108 4.108 5 C -0.040 4.040 6 C -0.037 4.037 7 C 0.001 3.999 8 C 0.107 3.893 9 C -0.517 4.517 10 H 0.042 0.958 11 C 0.004 3.996 12 N -0.931 5.931 13 Si 0.967 3.033 14 H -0.270 1.270 15 H -0.269 1.269 16 H -0.276 1.276 17 N -0.548 5.548 18 C 0.176 3.824 19 N -0.458 5.458 20 C 0.105 3.895 21 H 0.068 0.932 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.012 0.988 29 H -0.013 1.013 30 H 0.266 0.734 31 H 0.243 0.757 32 H 0.101 0.899 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.091 1.074 -5.007 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.122 4.122 3 H 0.085 0.915 4 C -0.146 4.146 5 C -0.078 4.078 6 C -0.150 4.150 7 C -0.126 4.126 8 C 0.069 3.931 9 C -0.555 4.555 10 H 0.060 0.940 11 C -0.194 4.194 12 N -0.572 5.572 13 Si 0.792 3.208 14 H -0.195 1.195 15 H -0.194 1.194 16 H -0.202 1.202 17 N -0.269 5.269 18 C -0.106 4.106 19 N -0.143 5.143 20 C -0.015 4.015 21 H 0.087 0.913 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.111 0.889 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.030 0.970 29 H 0.005 0.995 30 H 0.075 0.925 31 H 0.259 0.741 32 H 0.119 0.881 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -19.412 0.876 -5.344 20.154 hybrid contribution 0.491 0.693 0.484 0.978 sum -18.922 1.569 -4.860 19.599 Atomic orbital electron populations 1.21709 0.90919 1.03209 1.03319 1.21449 0.98390 0.99278 0.93112 0.91547 1.21719 0.92581 1.01257 0.99047 1.20137 0.96047 1.01558 0.90103 1.20929 0.91858 1.11910 0.90321 1.20788 0.94498 1.05385 0.91907 1.17235 0.89451 0.95919 0.90512 1.21266 1.15906 0.94727 1.23643 0.93986 1.25916 0.96793 1.01675 0.95016 1.70092 1.25698 1.33799 1.27592 0.85369 0.78123 0.79051 0.78298 1.19466 1.19376 1.20176 1.70274 1.25007 1.22938 1.08644 1.25434 0.83454 1.04471 0.97285 1.45461 1.09390 1.52896 1.06547 1.22363 0.75131 1.03085 1.00961 0.91291 0.90980 0.91275 0.91238 0.88869 0.91252 0.91405 0.96975 0.99502 0.92532 0.74119 0.88116 0.87046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 9.16 71.98 0.66 -0.83 16 2 C -0.10 -1.92 2.71 -10.66 -0.03 -1.95 16 3 H 0.07 1.45 8.11 -2.39 -0.02 1.43 16 4 C -0.11 -2.45 5.25 30.80 0.16 -2.29 16 5 C -0.04 -1.38 6.01 30.02 0.18 -1.20 16 6 C -0.04 -1.52 6.56 40.73 0.27 -1.26 16 7 C 0.00 0.06 6.28 41.16 0.26 0.32 16 8 C 0.11 6.46 5.36 29.10 0.16 6.62 16 9 C -0.52 -32.37 9.09 25.60 0.23 -32.14 16 10 H 0.04 2.65 7.74 -2.91 -0.02 2.63 16 11 C 0.00 0.21 5.46 84.65 0.46 0.68 16 12 N -0.93 -59.05 13.29 21.45 0.28 -58.77 16 13 Si 0.97 46.87 29.54 68.60 2.03 48.89 16 14 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 15 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 16 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 17 N -0.55 -26.71 11.27 -188.96 -2.13 -28.84 16 18 C 0.18 6.18 12.66 180.38 2.28 8.47 16 19 N -0.46 -14.78 3.13 -514.85 -1.61 -16.39 16 20 C 0.11 2.03 6.29 86.48 0.54 2.58 16 21 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 22 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 23 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.07 1.50 8.12 -2.39 -0.02 1.48 16 25 H 0.09 1.71 8.12 -2.38 -0.02 1.69 16 26 H 0.07 2.56 7.91 -2.39 -0.02 2.54 16 27 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.01 0.74 7.79 -2.39 -0.02 0.72 16 29 H -0.01 -0.90 8.14 -2.39 -0.02 -0.91 16 30 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 31 H 0.24 5.64 8.06 -2.91 -0.02 5.62 16 32 H 0.10 1.53 8.13 -2.39 -0.02 1.51 16 33 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -79.36 274.53 4.82 -74.54 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: 1.07 Total: 1.57 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 5.18 Total: -21.00 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -3.46 Total: -104.00 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.89 kcal Total: -79.36 4.82 -74.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261209917.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.473 kcal (2) G-P(sol) polarization free energy of solvation -79.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds