Wall clock time and date at job start Mon Mar 30 2020 20:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46975 * 2 1 4 4 C 1.50698 * 109.46967 * 119.99612 * 2 1 3 5 5 C 1.38627 * 120.45136 * 275.00253 * 4 2 1 6 6 C 1.38577 * 118.39787 * 179.97438 * 5 4 2 7 7 C 1.50700 * 120.44268 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.47210 * 154.99725 * 7 6 5 9 9 C 1.53000 * 109.47313 * 34.99544 * 7 6 5 10 10 C 1.50702 * 109.46869 * 274.99432 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 7 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 7 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 N 1.32342 * 119.11101 * 0.26770 * 6 5 4 19 19 C 1.31783 * 120.81275 * 359.45021 * 18 6 5 20 20 N 1.31811 * 121.75890 * 0.56268 * 19 18 6 21 21 H 1.08998 * 109.46979 * 60.00466 * 1 2 3 22 22 H 1.09000 * 109.47046 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47282 * 300.00442 * 1 2 3 24 24 H 1.08994 * 109.47105 * 239.99374 * 2 1 3 25 25 H 1.09006 * 109.47293 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.46886 * 299.99591 * 3 2 1 27 27 H 1.09003 * 109.47476 * 59.99677 * 3 2 1 28 28 H 1.07997 * 120.79792 * 359.97438 * 5 4 2 29 29 H 1.09001 * 109.47192 * 180.02562 * 9 7 6 30 30 H 1.09004 * 109.47084 * 299.99675 * 9 7 6 31 31 H 1.08994 * 109.47175 * 60.00247 * 9 7 6 32 32 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 33 33 H 1.08005 * 119.11865 * 180.26251 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.1682 -0.0278 2.4294 6 6 2.6334 -0.7228 3.5344 7 6 2.7982 -0.0265 4.8607 8 1 2.7327 -0.7582 5.6659 9 6 1.6927 1.0178 5.0293 10 6 4.1425 0.6531 4.9076 11 1 4.8105 0.5876 4.0615 12 6 4.5171 1.3636 6.0283 13 7 3.7034 1.4437 7.0584 14 14 6.1802 2.2123 6.0834 15 1 6.2654 3.2063 4.9834 16 1 6.3406 2.9025 7.3884 17 1 7.2570 1.2024 5.9224 18 7 2.9355 -2.0051 3.4081 19 6 2.7885 -2.6227 2.2533 20 7 2.3489 -1.9941 1.1814 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4426 -0.0005 26 1 1.6767 1.9562 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.9176 1.0203 2.5006 29 1 1.8122 1.5218 5.9884 30 1 1.7583 1.7496 4.2241 31 1 0.7205 0.5263 4.9954 32 1 3.9671 1.9433 7.8470 33 1 3.0394 -3.6708 2.1821 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261216523.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:27 Heat of formation + Delta-G solvation = 6.324763 kcal Electronic energy + Delta-G solvation = -14853.504884 eV Core-core repulsion = 12491.863037 eV Total energy + Delta-G solvation = -2361.641847 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.00960 -37.33605 -36.56625 -34.15150 -32.65000 -30.77867 -28.07435 -27.37430 -25.60046 -25.41636 -22.62598 -20.95162 -18.61756 -18.31680 -17.43986 -16.52331 -16.18728 -15.83514 -15.26474 -14.91190 -14.76250 -14.36013 -13.92753 -13.52312 -13.01134 -12.88843 -12.83946 -12.48006 -12.42055 -12.32145 -12.18131 -11.99552 -11.88478 -11.50330 -11.41157 -10.87686 -10.54850 -10.22679 -10.00331 -8.17136 -6.32461 0.12142 0.24721 1.40464 1.41870 1.49911 2.38704 2.94396 3.09249 3.11416 3.37683 3.60575 4.08345 4.12152 4.25682 4.31534 4.44219 4.69927 4.78328 4.83546 4.87469 4.94514 4.98510 5.02572 5.09749 5.21508 5.35115 5.38514 5.48065 5.63207 5.71484 5.94436 6.17563 6.30260 6.71461 7.29761 7.35426 8.88044 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.032039 B = 0.008185 C = 0.007719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.711996 B = 3419.983592 C = 3626.644567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.042 4.042 3 C -0.146 4.146 4 C 0.172 3.828 5 C -0.225 4.225 6 C 0.195 3.805 7 C 0.082 3.918 8 H 0.011 0.989 9 C -0.123 4.123 10 C -0.525 4.525 11 H 0.042 0.958 12 C 0.023 3.977 13 N -0.910 5.910 14 Si 0.958 3.042 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.278 1.278 18 N -0.560 5.560 19 C 0.281 3.719 20 N -0.545 5.545 21 H 0.092 0.908 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.098 0.902 25 H 0.046 0.954 26 H 0.092 0.908 27 H 0.058 0.942 28 H 0.153 0.847 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.027 0.973 32 H 0.267 0.733 33 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.154 0.013 -12.725 13.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.061 4.061 3 C -0.204 4.204 4 C 0.026 3.974 5 C -0.246 4.246 6 C 0.052 3.948 7 C 0.063 3.937 8 H 0.029 0.971 9 C -0.181 4.181 10 C -0.563 4.563 11 H 0.061 0.939 12 C -0.177 4.177 13 N -0.549 5.549 14 Si 0.783 3.217 15 H -0.191 1.191 16 H -0.202 1.202 17 H -0.204 1.204 18 N -0.275 5.275 19 C -0.007 4.007 20 N -0.260 5.260 21 H 0.111 0.889 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.116 0.884 25 H 0.065 0.935 26 H 0.111 0.889 27 H 0.077 0.923 28 H 0.170 0.830 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -4.937 -0.871 -12.593 13.554 hybrid contribution 0.835 0.929 0.725 1.444 sum -4.101 0.058 -11.868 12.557 Atomic orbital electron populations 1.21774 0.91947 1.02169 1.03397 1.20190 0.97381 0.95811 0.92727 1.21924 1.00853 0.94017 1.03607 1.22224 0.89996 0.89756 0.95444 1.22689 1.04711 1.03437 0.93784 1.22415 0.85830 0.88979 0.97614 1.17730 0.95848 0.93067 0.87099 0.97103 1.21676 0.94863 0.98694 1.02833 1.20988 1.00924 1.32864 1.01544 0.93947 1.25645 1.00630 0.96622 0.94837 1.69978 1.37346 1.41945 1.05595 0.85617 0.79642 0.78659 0.77807 1.19137 1.20158 1.20360 1.68290 1.18875 1.11545 1.28786 1.25469 0.90789 1.01498 0.82932 1.68250 1.15310 1.10234 1.32247 0.88932 0.93081 0.92817 0.88424 0.93471 0.88922 0.92280 0.82982 0.91269 0.93524 0.95397 0.92420 0.76425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.18 71.98 0.66 -2.06 16 2 C -0.04 -1.01 3.27 -11.54 -0.04 -1.05 16 3 C -0.15 -3.17 8.64 71.98 0.62 -2.55 16 4 C 0.17 5.77 5.82 42.58 0.25 6.02 16 5 C -0.22 -8.71 8.35 22.44 0.19 -8.52 16 6 C 0.20 9.01 5.76 42.56 0.25 9.25 16 7 C 0.08 4.27 2.65 -12.29 -0.03 4.24 16 8 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 9 C -0.12 -5.77 8.41 71.98 0.61 -5.17 16 10 C -0.52 -29.32 8.55 25.60 0.22 -29.10 16 11 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 12 C 0.02 1.24 5.30 84.66 0.45 1.69 16 13 N -0.91 -51.53 11.31 21.45 0.24 -51.28 16 14 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 15 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 16 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 N -0.56 -25.05 10.38 -188.08 -1.95 -27.00 16 19 C 0.28 10.27 12.28 180.88 2.22 12.49 16 20 N -0.55 -19.14 10.38 -188.06 -1.95 -21.09 16 21 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.35 6.58 -2.39 -0.02 1.34 16 28 H 0.15 5.51 4.83 -2.91 -0.01 5.50 16 29 H 0.07 3.59 6.06 -2.39 -0.01 3.57 16 30 H 0.05 2.01 6.58 -2.38 -0.02 1.99 16 31 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.27 14.25 8.31 -92.70 -0.77 13.48 16 33 H 0.22 6.06 8.06 -2.91 -0.02 6.04 16 Total: -1.00 -63.42 274.42 4.84 -58.57 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 1.09 Total: 10.25 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 5.39 Total: -14.76 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -3.66 Total: -99.37 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -63.42 4.84 -58.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261216523.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.899 kcal (2) G-P(sol) polarization free energy of solvation -63.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds