Wall clock time and date at job start Mon Mar 30 2020 20:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.49407 * 2 1 4 4 C 1.53119 * 109.49549 * 239.93722 * 2 1 3 5 5 C 1.53283 * 109.70350 * 170.13690 * 4 2 1 6 6 N 1.46476 * 108.69378 * 50.77168 * 5 4 2 7 7 C 1.34406 * 128.44653 * 162.43037 * 6 5 4 8 8 N 1.30780 * 108.55539 * 180.02562 * 7 6 5 9 9 C 1.34426 * 109.31867 * 0.27407 * 8 7 6 10 10 C 1.50705 * 126.10023 * 179.77907 * 9 8 7 11 11 C 1.50705 * 109.47015 * 270.01899 * 10 9 8 12 12 H 1.08002 * 119.99876 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00117 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99720 * 0.02562 * 13 11 10 15 15 Si 1.86790 * 119.99972 * 179.97438 * 13 11 10 16 16 H 1.48512 * 109.47086 * 60.00598 * 15 13 11 17 17 H 1.48501 * 109.47145 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47388 * 300.00509 * 15 13 11 19 19 C 1.33859 * 107.80029 * 359.79144 * 9 8 7 20 20 C 1.50711 * 128.68356 * 180.11685 * 19 9 8 21 21 H 1.09000 * 109.47479 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47369 * 300.06277 * 1 2 3 23 23 H 1.09003 * 109.47553 * 60.06690 * 1 2 3 24 24 H 1.09000 * 109.43383 * 50.06572 * 4 2 1 25 25 H 1.08995 * 109.43549 * 290.20655 * 4 2 1 26 26 H 1.08998 * 109.60036 * 291.01231 * 5 4 2 27 27 H 1.08994 * 109.60313 * 170.53238 * 5 4 2 28 28 H 1.08000 * 125.71930 * 0.15716 * 7 6 5 29 29 H 1.09004 * 109.47164 * 30.01847 * 10 9 8 30 30 H 1.08997 * 109.47248 * 150.01820 * 10 9 8 31 31 H 0.96993 * 119.99127 * 179.97438 * 14 13 11 32 32 H 1.09006 * 109.74293 * 44.58290 * 20 19 9 33 33 H 1.08997 * 109.78724 * 283.89025 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0409 -0.7231 -1.2492 5 6 3.5537 -0.5155 -1.3840 6 7 4.1896 -0.8549 -0.1089 7 6 5.4832 -1.1274 0.1334 8 7 5.6236 -1.3796 1.4089 9 6 4.4280 -1.2820 2.0157 10 6 4.1556 -1.5019 3.4815 11 6 3.8254 -2.9530 3.7189 12 1 3.8143 -3.6467 2.8912 13 6 3.5384 -3.3953 4.9929 14 7 3.5524 -2.5506 6.0009 15 14 3.1284 -5.1938 5.2870 16 1 4.2742 -6.0384 4.8637 17 1 2.8613 -5.4108 6.7316 18 1 1.9244 -5.5622 4.4996 19 6 3.5226 -0.9550 1.0857 20 6 2.0424 -0.7251 1.2518 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5148 0.8894 23 1 -0.3634 0.5128 -0.8906 24 1 1.5400 -0.3225 -2.1305 25 1 1.8273 -1.7885 -1.1645 26 1 3.7593 0.5265 -1.6292 27 1 3.9429 -1.1623 -2.1703 28 1 6.2745 -1.1346 -0.6017 29 1 5.0390 -1.2310 4.0599 30 1 3.3142 -0.8823 3.7917 31 1 3.3502 -2.8618 6.8971 32 1 1.8619 -0.1101 2.1335 33 1 1.5302 -1.6813 1.3589 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261216648.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:33 Heat of formation + Delta-G solvation = 37.725673 kcal Electronic energy + Delta-G solvation = -14950.847223 eV Core-core repulsion = 12590.567022 eV Total energy + Delta-G solvation = -2360.280201 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.60444 -36.96152 -33.80513 -32.51918 -30.43979 -29.46963 -27.44678 -25.28474 -23.64903 -22.56112 -21.09384 -19.28960 -18.48458 -16.32779 -16.16033 -15.30293 -14.54200 -14.38407 -14.07063 -13.78702 -13.27034 -13.10788 -12.29220 -12.19058 -12.14667 -11.75541 -11.47594 -11.12237 -10.79165 -10.69014 -10.62689 -10.53609 -10.46771 -9.74419 -9.35021 -8.94365 -8.62056 -8.26063 -7.27637 -5.88525 -3.89660 2.78638 3.34705 3.40623 3.44230 3.47955 4.08388 4.58638 4.58899 4.66889 4.80457 5.14828 5.22392 5.25714 5.35129 5.45894 5.61230 5.61518 5.73579 5.78885 5.89449 6.03571 6.13438 6.27075 6.44076 6.52077 6.67314 7.12898 7.61442 7.67104 7.89011 8.03308 8.09074 8.53698 9.02248 9.13409 9.71827 11.21642 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.029576 B = 0.008552 C = 0.007454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.489840 B = 3273.284439 C = 3755.433336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.070 0.930 4 C -0.127 4.127 5 C 0.110 3.890 6 N -0.467 5.467 7 C 0.159 3.841 8 N -0.491 5.491 9 C 0.058 3.942 10 C 0.094 3.906 11 C -0.498 4.498 12 H 0.052 0.948 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.893 3.107 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.278 1.278 19 C -0.048 4.048 20 C -0.028 4.028 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.193 0.807 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.260 0.740 32 H 0.083 0.917 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.991 5.641 -15.312 17.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 H 0.088 0.912 4 C -0.165 4.165 5 C -0.013 4.013 6 N -0.154 5.154 7 C -0.122 4.122 8 N -0.211 5.211 9 C -0.070 4.070 10 C 0.056 3.944 11 C -0.537 4.537 12 H 0.070 0.930 13 C -0.144 4.144 14 N -0.537 5.537 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.204 1.204 19 C -0.158 4.158 20 C -0.067 4.067 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.070 0.930 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.209 0.791 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.324 5.490 -14.868 16.428 hybrid contribution -0.766 -0.858 -0.407 1.220 sum -5.090 4.633 -15.275 16.754 Atomic orbital electron populations 1.21802 0.94603 1.02111 1.01647 1.21267 0.95954 0.99529 0.94773 0.91182 1.21911 0.93399 1.02216 0.98941 1.21775 0.93978 1.01003 0.84575 1.45224 1.08531 1.53952 1.07742 1.24596 0.85170 1.06827 0.95596 1.70452 1.26934 1.19950 1.03740 1.21239 0.87155 1.00180 0.98406 1.17622 0.97187 0.96820 0.82770 1.20998 1.46031 0.93629 0.93036 0.93003 1.24969 0.95891 0.97457 0.96103 1.69952 1.49868 1.34301 0.99623 0.86644 0.78800 0.85607 0.76861 1.20325 1.21313 1.20391 1.20758 0.95642 1.14036 0.85390 1.20105 0.88449 1.01009 0.97109 0.92403 0.92154 0.92966 0.90311 0.90866 0.90721 0.89997 0.79058 0.95156 0.95245 0.92999 0.89830 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.17 37.15 0.34 -1.16 16 2 C -0.10 -1.20 2.74 -90.32 -0.25 -1.45 16 3 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 4 C -0.13 -1.38 5.22 -26.52 -0.14 -1.52 16 5 C 0.11 1.27 7.00 -3.91 -0.03 1.24 16 6 N -0.47 -7.95 3.13 -114.09 -0.36 -8.31 16 7 C 0.16 2.92 12.66 -90.72 -1.15 1.77 16 8 N -0.49 -11.65 11.27 -11.08 -0.12 -11.77 16 9 C 0.06 1.43 6.28 -82.99 -0.52 0.91 16 10 C 0.09 2.63 5.37 -29.03 -0.16 2.48 16 11 C -0.50 -14.83 9.09 -34.44 -0.31 -15.14 16 12 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 15 Si 0.89 22.43 29.54 -169.99 -5.02 17.41 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 19 C -0.05 -0.97 6.56 -81.73 -0.54 -1.51 16 20 C -0.03 -0.49 5.32 -27.63 -0.15 -0.63 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.08 0.64 8.11 -51.93 -0.42 0.22 16 25 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.19 2.60 8.06 -52.49 -0.42 2.17 16 29 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.03 0.83 7.79 -51.93 -0.40 0.42 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.08 1.48 7.91 -51.93 -0.41 1.07 16 33 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 LS Contribution 274.53 15.07 4.14 4.14 Total: -1.00 -34.03 274.53 -8.62 -42.65 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -5.00 Total: -3.94 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -2.99 Total: -13.46 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.25 Total: -46.81 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -34.03 -8.62 -42.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261216648.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.379 kcal (2) G-P(sol) polarization free energy of solvation -34.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds