Wall clock time and date at job start Mon Mar 30 2020 20:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.49407 * 2 1 4 4 C 1.53119 * 109.49549 * 239.93722 * 2 1 3 5 5 C 1.53283 * 109.70350 * 170.13690 * 4 2 1 6 6 N 1.46476 * 108.69378 * 50.77168 * 5 4 2 7 7 C 1.34406 * 128.44653 * 162.43037 * 6 5 4 8 8 N 1.30780 * 108.55539 * 180.02562 * 7 6 5 9 9 C 1.34426 * 109.31867 * 0.27407 * 8 7 6 10 10 C 1.50705 * 126.10023 * 179.77907 * 9 8 7 11 11 C 1.50705 * 109.47015 * 270.01899 * 10 9 8 12 12 H 1.08002 * 119.99876 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00117 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99720 * 0.02562 * 13 11 10 15 15 Si 1.86790 * 119.99972 * 179.97438 * 13 11 10 16 16 H 1.48512 * 109.47086 * 60.00598 * 15 13 11 17 17 H 1.48501 * 109.47145 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47388 * 300.00509 * 15 13 11 19 19 C 1.33859 * 107.80029 * 359.79144 * 9 8 7 20 20 C 1.50711 * 128.68356 * 180.11685 * 19 9 8 21 21 H 1.09000 * 109.47479 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47369 * 300.06277 * 1 2 3 23 23 H 1.09003 * 109.47553 * 60.06690 * 1 2 3 24 24 H 1.09000 * 109.43383 * 50.06572 * 4 2 1 25 25 H 1.08995 * 109.43549 * 290.20655 * 4 2 1 26 26 H 1.08998 * 109.60036 * 291.01231 * 5 4 2 27 27 H 1.08994 * 109.60313 * 170.53238 * 5 4 2 28 28 H 1.08000 * 125.71930 * 0.15716 * 7 6 5 29 29 H 1.09004 * 109.47164 * 30.01847 * 10 9 8 30 30 H 1.08997 * 109.47248 * 150.01820 * 10 9 8 31 31 H 0.96993 * 119.99127 * 179.97438 * 14 13 11 32 32 H 1.09006 * 109.74293 * 44.58290 * 20 19 9 33 33 H 1.08997 * 109.78724 * 283.89025 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0409 -0.7231 -1.2492 5 6 3.5537 -0.5155 -1.3840 6 7 4.1896 -0.8549 -0.1089 7 6 5.4832 -1.1274 0.1334 8 7 5.6236 -1.3796 1.4089 9 6 4.4280 -1.2820 2.0157 10 6 4.1556 -1.5019 3.4815 11 6 3.8254 -2.9530 3.7189 12 1 3.8143 -3.6467 2.8912 13 6 3.5384 -3.3953 4.9929 14 7 3.5524 -2.5506 6.0009 15 14 3.1284 -5.1938 5.2870 16 1 4.2742 -6.0384 4.8637 17 1 2.8613 -5.4108 6.7316 18 1 1.9244 -5.5622 4.4996 19 6 3.5226 -0.9550 1.0857 20 6 2.0424 -0.7251 1.2518 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5148 0.8894 23 1 -0.3634 0.5128 -0.8906 24 1 1.5400 -0.3225 -2.1305 25 1 1.8273 -1.7885 -1.1645 26 1 3.7593 0.5265 -1.6292 27 1 3.9429 -1.1623 -2.1703 28 1 6.2745 -1.1346 -0.6017 29 1 5.0390 -1.2310 4.0599 30 1 3.3142 -0.8823 3.7917 31 1 3.3502 -2.8618 6.8971 32 1 1.8619 -0.1101 2.1335 33 1 1.5302 -1.6813 1.3589 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261216648.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:33 Heat of formation + Delta-G solvation = 16.971397 kcal Electronic energy + Delta-G solvation = -14951.747196 eV Core-core repulsion = 12590.567022 eV Total energy + Delta-G solvation = -2361.180174 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.09382 -38.08939 -35.66460 -34.27179 -32.01929 -30.96972 -28.93910 -26.86658 -25.18588 -24.13516 -22.33055 -20.76583 -19.83754 -18.50455 -17.64076 -16.61000 -16.40402 -15.56808 -15.40193 -15.15120 -14.51244 -14.32846 -14.19985 -13.82631 -13.29420 -13.19934 -13.10512 -12.71298 -12.54945 -12.49269 -11.87518 -11.81194 -11.64884 -11.59222 -11.46580 -10.66766 -10.50660 -10.14583 -8.96431 -8.15548 -6.28850 1.28548 1.37659 1.41883 1.50048 2.08793 2.31759 2.50921 3.12658 3.64007 3.75360 3.79762 3.90144 4.04560 4.37977 4.39720 4.48707 4.64506 4.73664 4.77508 4.90610 4.94808 4.97072 5.01088 5.17442 5.29431 5.34169 5.46228 5.57601 5.62821 5.76736 5.98411 6.27640 6.61749 6.80012 7.37613 7.41330 8.93214 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.029576 B = 0.008552 C = 0.007454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.489840 B = 3273.284439 C = 3755.433336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 H 0.075 0.925 4 C -0.124 4.124 5 C 0.099 3.901 6 N -0.458 5.458 7 C 0.176 3.824 8 N -0.549 5.549 9 C 0.000 4.000 10 C 0.108 3.892 11 C -0.519 4.519 12 H 0.042 0.958 13 C 0.003 3.997 14 N -0.931 5.931 15 Si 0.967 3.033 16 H -0.274 1.274 17 H -0.275 1.275 18 H -0.264 1.264 19 C -0.037 4.037 20 C -0.032 4.032 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.081 0.919 24 H 0.121 0.879 25 H 0.060 0.940 26 H 0.102 0.898 27 H 0.114 0.886 28 H 0.243 0.757 29 H -0.014 1.014 30 H 0.010 0.990 31 H 0.266 0.734 32 H 0.064 0.936 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.039 5.345 -18.543 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 H 0.093 0.907 4 C -0.161 4.161 5 C -0.021 4.021 6 N -0.143 5.143 7 C -0.106 4.106 8 N -0.270 5.270 9 C -0.127 4.127 10 C 0.070 3.930 11 C -0.557 4.557 12 H 0.061 0.939 13 C -0.194 4.194 14 N -0.571 5.571 15 Si 0.791 3.209 16 H -0.200 1.200 17 H -0.200 1.200 18 H -0.188 1.188 19 C -0.150 4.150 20 C -0.071 4.071 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.100 0.900 24 H 0.140 0.860 25 H 0.079 0.921 26 H 0.120 0.880 27 H 0.133 0.867 28 H 0.259 0.741 29 H 0.004 0.996 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.391 5.211 -18.135 19.624 hybrid contribution -0.402 -0.694 0.540 0.967 sum -5.793 4.516 -17.595 19.067 Atomic orbital electron populations 1.21778 0.92892 1.02307 1.02804 1.21232 0.97340 0.99136 0.93047 0.90670 1.21957 0.93256 1.01474 0.99423 1.22334 0.94087 1.03427 0.82249 1.45505 1.07988 1.52246 1.08601 1.25434 0.86714 1.03807 0.94637 1.70268 1.27339 1.22702 1.06663 1.20787 0.89447 1.04928 0.97491 1.17214 0.94260 0.95905 0.85600 1.21210 1.46857 0.94371 0.93281 0.93944 1.25925 0.95247 1.02710 0.95544 1.70083 1.50143 1.36716 1.00163 0.85486 0.78942 0.79080 0.77426 1.19974 1.20007 1.18837 1.20913 0.96453 1.11654 0.85981 1.20186 0.86790 1.00712 0.99381 0.92698 0.92812 0.90036 0.86042 0.92076 0.87961 0.86748 0.74076 0.99580 0.97138 0.92540 0.91727 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.17 71.98 0.66 -1.91 16 2 C -0.09 -2.01 2.74 -10.60 -0.03 -2.04 16 3 H 0.07 1.65 8.12 -2.38 -0.02 1.63 16 4 C -0.12 -2.16 5.22 30.73 0.16 -2.00 16 5 C 0.10 1.82 7.00 86.48 0.61 2.42 16 6 N -0.46 -14.60 3.13 -514.86 -1.61 -16.21 16 7 C 0.18 6.16 12.66 180.38 2.28 8.44 16 8 N -0.55 -26.74 11.27 -188.96 -2.13 -28.87 16 9 C 0.00 0.02 6.28 41.17 0.26 0.28 16 10 C 0.11 6.56 5.37 29.10 0.16 6.72 16 11 C -0.52 -32.53 9.09 25.60 0.23 -32.30 16 12 H 0.04 2.67 7.74 -2.91 -0.02 2.64 16 13 C 0.00 0.21 5.46 84.65 0.46 0.67 16 14 N -0.93 -59.16 13.29 21.45 0.28 -58.87 16 15 Si 0.97 46.87 29.54 68.60 2.03 48.90 16 16 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 18 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 19 C -0.04 -1.51 6.56 40.73 0.27 -1.25 16 20 C -0.03 -1.12 5.32 30.01 0.16 -0.96 16 21 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.12 1.20 8.11 -2.39 -0.02 1.18 16 25 H 0.06 1.26 8.11 -2.39 -0.02 1.24 16 26 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.24 5.58 8.06 -2.91 -0.02 5.55 16 29 H -0.01 -0.95 8.14 -2.39 -0.02 -0.97 16 30 H 0.01 0.65 7.79 -2.39 -0.02 0.63 16 31 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 32 H 0.06 2.44 7.91 -2.38 -0.02 2.42 16 33 H 0.07 2.44 8.11 -2.39 -0.02 2.42 16 Total: -1.00 -80.00 274.53 4.86 -75.14 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: 1.07 Total: 1.83 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: 5.22 Total: -21.92 kcal Atomic # 7 Polarization: -100.49 SS G_CDS: -3.46 Total: -103.95 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -80.00 4.86 -75.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261216648.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.114 kcal (2) G-P(sol) polarization free energy of solvation -80.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds