Wall clock time and date at job start Mon Mar 30 2020 20:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 C 1.35310 * 126.12549 * 85.02767 * 12 2 1 14 14 C 1.39876 * 107.91886 * 179.97438 * 13 12 2 15 15 N 1.30831 * 108.20311 * 359.97438 * 14 13 12 16 16 N 1.34948 * 126.12829 * 264.71384 * 12 2 1 17 17 C 1.46501 * 126.03478 * 0.03386 * 16 12 2 18 18 C 1.53777 * 113.61669 * 219.14050 * 17 16 12 19 19 C 1.53953 * 87.02332 * 220.05166 * 18 17 16 20 20 C 1.53782 * 113.61448 * 121.52974 * 17 16 12 21 21 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 22 22 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 23 23 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 25 25 H 1.08003 * 126.04199 * 359.93509 * 13 12 2 26 26 H 1.08000 * 125.89563 * 180.02562 * 14 13 12 27 27 H 1.08997 * 112.85046 * 350.33607 * 17 16 12 28 28 H 1.09010 * 113.61146 * 334.56519 * 18 17 16 29 29 H 1.08997 * 113.61937 * 105.46935 * 18 17 16 30 30 H 1.09008 * 113.53130 * 270.81306 * 19 18 17 31 31 H 1.08992 * 113.75154 * 139.93986 * 19 18 17 32 32 H 1.08993 * 113.61493 * 254.53096 * 20 17 16 33 33 H 1.09005 * 113.60960 * 25.43566 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.3570 -2.1535 -4.4186 10 1 2.5020 -0.1303 -5.1087 11 1 3.6403 -1.7503 -3.7084 12 6 2.0323 -0.7104 1.2306 13 6 2.2088 -2.0451 1.3650 14 6 2.6879 -2.2880 2.6565 15 7 2.7956 -1.1402 3.2750 16 7 2.3921 -0.1287 2.3939 17 6 2.3630 1.3068 2.6849 18 6 3.5618 1.7910 3.5175 19 6 2.5675 2.6837 4.2822 20 6 1.4770 1.6739 3.8870 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7173 1.1669 -3.4844 25 1 2.0136 -2.7913 0.6089 26 1 2.9282 -3.2559 3.0711 27 1 2.1721 1.9142 1.8002 28 1 4.0100 1.0105 4.1325 29 1 4.2973 2.3507 2.9397 30 1 2.4335 3.6685 3.8346 31 1 2.7531 2.7282 5.3553 32 1 0.5320 2.1391 3.6069 33 1 1.3542 0.8613 4.6031 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261224534.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:43:01 Heat of formation + Delta-G solvation = 84.974809 kcal Electronic energy + Delta-G solvation = -15035.183704 eV Core-core repulsion = 12676.952380 eV Total energy + Delta-G solvation = -2358.231325 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.55159 -38.00588 -34.43337 -31.44752 -30.51293 -27.78597 -25.53138 -25.16400 -24.80151 -21.91074 -20.86718 -19.13033 -18.47508 -16.34783 -16.04409 -15.23789 -14.62270 -14.24264 -13.95312 -13.11882 -12.73308 -12.53665 -12.33190 -12.05794 -11.91038 -11.46792 -10.98520 -10.95081 -10.87228 -10.60565 -10.43305 -10.38980 -10.20354 -10.03470 -9.51012 -9.02389 -8.48233 -8.30986 -7.52309 -6.08449 -4.13905 2.75804 3.24917 3.28401 3.35119 3.39992 3.75507 4.39349 4.63460 4.73172 4.96733 5.02432 5.24558 5.50118 5.65381 5.78853 5.89651 5.91685 5.95285 6.06398 6.17121 6.30901 6.57234 6.69916 6.75420 6.94778 7.04492 7.12545 7.53388 7.58303 7.76677 7.87114 8.05213 8.30144 8.60990 8.88481 9.51052 10.98451 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.033859 B = 0.008555 C = 0.007648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.755228 B = 3272.262000 C = 3660.161107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.098 3.902 3 H 0.034 0.966 4 C -0.506 4.506 5 H 0.065 0.935 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.136 3.864 13 C -0.284 4.284 14 C 0.034 3.966 15 N -0.328 5.328 16 N -0.370 5.370 17 C 0.138 3.862 18 C -0.141 4.141 19 C -0.139 4.139 20 C -0.144 4.144 21 H 0.007 0.993 22 H 0.090 0.910 23 H 0.033 0.967 24 H 0.262 0.738 25 H 0.140 0.860 26 H 0.170 0.830 27 H 0.124 0.876 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.447 1.626 9.102 9.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.077 3.923 3 H 0.052 0.948 4 C -0.544 4.544 5 H 0.083 0.917 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.009 3.991 13 C -0.313 4.313 14 C -0.151 4.151 15 N -0.149 5.149 16 N -0.152 5.152 17 C 0.035 3.965 18 C -0.179 4.179 19 C -0.177 4.177 20 C -0.182 4.182 21 H 0.026 0.974 22 H 0.108 0.892 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.158 0.842 26 H 0.187 0.813 27 H 0.142 0.858 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.705 2.453 10.087 10.520 hybrid contribution 0.068 -0.938 -1.686 1.931 sum 1.773 1.515 8.401 8.719 Atomic orbital electron populations 1.21746 0.96771 0.99866 1.00302 1.17568 0.93025 0.94978 0.86681 0.94796 1.21098 1.31372 1.12588 0.89377 0.91723 1.24946 0.94998 0.94980 0.99059 1.69869 1.36759 1.22824 1.23623 0.86501 0.79385 0.79335 0.82299 1.20538 1.21238 1.19800 1.22162 0.94458 0.93874 0.88604 1.21135 1.16168 0.95661 0.98296 1.23658 1.00461 0.96526 0.94430 1.77006 1.24930 0.95521 1.17401 1.48510 1.51415 1.05401 1.09832 1.22812 0.97999 0.77360 0.98322 1.23316 0.96549 0.99433 0.98581 1.22727 0.96641 0.97687 1.00597 1.23348 0.97842 0.99304 0.97731 0.97438 0.89162 0.94785 0.92840 0.84196 0.81329 0.85804 0.88716 0.91022 0.89861 0.90923 0.90935 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.95 37.16 0.33 -2.73 16 2 C 0.10 2.42 2.47 -92.92 -0.23 2.19 16 3 H 0.03 0.88 6.89 -51.93 -0.36 0.53 16 4 C -0.51 -13.57 8.25 -34.44 -0.28 -13.86 16 5 H 0.06 1.74 6.82 -52.49 -0.36 1.38 16 6 C 0.06 1.65 5.31 -17.82 -0.09 1.56 16 7 N -0.89 -24.57 11.33 55.43 0.63 -23.95 16 8 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 C 0.14 3.09 5.85 -82.26 -0.48 2.61 16 13 C -0.28 -6.12 9.70 -40.01 -0.39 -6.51 16 14 C 0.03 0.66 12.03 -17.36 -0.21 0.45 16 15 N -0.33 -6.59 12.03 30.62 0.37 -6.22 16 16 N -0.37 -7.59 3.68 -49.91 -0.18 -7.77 16 17 C 0.14 2.36 4.55 -67.12 -0.31 2.06 16 18 C -0.14 -2.02 7.78 -25.83 -0.20 -2.22 16 19 C -0.14 -1.64 8.09 -25.83 -0.21 -1.85 16 20 C -0.14 -2.06 7.88 -25.92 -0.20 -2.27 16 21 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 22 H 0.09 2.32 6.08 -51.93 -0.32 2.00 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.14 2.97 7.65 -52.48 -0.40 2.57 16 26 H 0.17 2.54 8.06 -52.49 -0.42 2.12 16 27 H 0.12 2.16 6.81 -51.93 -0.35 1.81 16 28 H 0.09 1.47 7.74 -51.92 -0.40 1.06 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 274.09 15.07 4.13 4.13 Total: -1.00 -28.74 274.09 -7.06 -35.80 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -4.71 Total: 2.72 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -2.27 Total: -20.59 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.81 Total: -37.94 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.74 -7.06 -35.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261224534.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.771 kcal (2) G-P(sol) polarization free energy of solvation -28.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds