Wall clock time and date at job start Mon Mar 30 2020 20:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 C 1.35310 * 126.12549 * 85.02767 * 12 2 1 14 14 C 1.39876 * 107.91886 * 179.97438 * 13 12 2 15 15 N 1.30831 * 108.20311 * 359.97438 * 14 13 12 16 16 N 1.34948 * 126.12829 * 264.71384 * 12 2 1 17 17 C 1.46501 * 126.03478 * 0.03386 * 16 12 2 18 18 C 1.53777 * 113.61669 * 219.14050 * 17 16 12 19 19 C 1.53953 * 87.02332 * 220.05166 * 18 17 16 20 20 C 1.53782 * 113.61448 * 121.52974 * 17 16 12 21 21 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 22 22 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 23 23 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 25 25 H 1.08003 * 126.04199 * 359.93509 * 13 12 2 26 26 H 1.08000 * 125.89563 * 180.02562 * 14 13 12 27 27 H 1.08997 * 112.85046 * 350.33607 * 17 16 12 28 28 H 1.09010 * 113.61146 * 334.56519 * 18 17 16 29 29 H 1.08997 * 113.61937 * 105.46935 * 18 17 16 30 30 H 1.09008 * 113.53130 * 270.81306 * 19 18 17 31 31 H 1.08992 * 113.75154 * 139.93986 * 19 18 17 32 32 H 1.08993 * 113.61493 * 254.53096 * 20 17 16 33 33 H 1.09005 * 113.60960 * 25.43566 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.3570 -2.1535 -4.4186 10 1 2.5020 -0.1303 -5.1087 11 1 3.6403 -1.7503 -3.7084 12 6 2.0323 -0.7104 1.2306 13 6 2.2088 -2.0451 1.3650 14 6 2.6879 -2.2880 2.6565 15 7 2.7956 -1.1402 3.2750 16 7 2.3921 -0.1287 2.3939 17 6 2.3630 1.3068 2.6849 18 6 3.5618 1.7910 3.5175 19 6 2.5675 2.6837 4.2822 20 6 1.4770 1.6739 3.8870 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7173 1.1669 -3.4844 25 1 2.0136 -2.7913 0.6089 26 1 2.9282 -3.2559 3.0711 27 1 2.1721 1.9142 1.8002 28 1 4.0100 1.0105 4.1325 29 1 4.2973 2.3507 2.9397 30 1 2.4335 3.6685 3.8346 31 1 2.7531 2.7282 5.3553 32 1 0.5320 2.1391 3.6069 33 1 1.3542 0.8613 4.6031 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261224534.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:43:01 Heat of formation + Delta-G solvation = 69.592619 kcal Electronic energy + Delta-G solvation = -15035.850726 eV Core-core repulsion = 12676.952380 eV Total energy + Delta-G solvation = -2358.898347 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.10842 -39.23168 -36.38267 -33.30111 -32.11645 -29.52806 -27.23473 -26.66011 -26.08487 -23.78274 -22.25623 -20.71878 -19.83127 -18.09625 -17.95736 -16.51950 -16.37504 -15.78073 -15.42155 -14.90348 -14.44697 -13.86033 -13.77422 -13.52887 -13.47592 -13.13440 -12.86408 -12.76223 -12.49240 -12.21195 -12.08472 -11.85917 -11.58339 -11.55568 -11.17226 -11.02322 -10.51271 -9.89535 -9.18536 -8.13769 -6.26003 1.14151 1.43701 1.44840 1.54730 1.77557 2.12563 2.44493 3.16101 3.45445 3.59382 3.74850 3.85844 4.13338 4.22002 4.45636 4.59704 4.71676 4.76045 4.86898 4.92649 4.96912 5.00608 5.04142 5.10029 5.14221 5.34770 5.44584 5.59724 5.79411 5.93775 5.99637 6.19579 6.43562 6.79211 7.00530 7.41977 8.92346 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.033859 B = 0.008555 C = 0.007648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.755228 B = 3272.262000 C = 3660.161107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.102 3.898 3 H 0.012 0.988 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.958 3.042 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.272 1.272 12 C 0.109 3.891 13 C -0.296 4.296 14 C 0.040 3.960 15 N -0.329 5.329 16 N -0.370 5.370 17 C 0.110 3.890 18 C -0.136 4.136 19 C -0.116 4.116 20 C -0.139 4.139 21 H 0.022 0.978 22 H 0.069 0.931 23 H 0.029 0.971 24 H 0.264 0.736 25 H 0.137 0.863 26 H 0.211 0.789 27 H 0.112 0.888 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.937 1.531 10.021 10.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.082 3.918 3 H 0.030 0.970 4 C -0.562 4.562 5 H 0.076 0.924 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.783 3.217 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.196 1.196 12 C -0.019 4.019 13 C -0.325 4.325 14 C -0.145 4.145 15 N -0.150 5.150 16 N -0.152 5.152 17 C 0.008 3.992 18 C -0.175 4.175 19 C -0.154 4.154 20 C -0.177 4.177 21 H 0.041 0.959 22 H 0.088 0.912 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.155 0.845 26 H 0.227 0.773 27 H 0.130 0.870 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.193 2.375 11.022 11.486 hybrid contribution -0.079 -0.904 -1.944 2.145 sum 2.114 1.471 9.078 9.437 Atomic orbital electron populations 1.21567 0.96446 0.99425 0.99992 1.17356 0.93292 0.93775 0.87371 0.96979 1.21341 1.31590 1.12665 0.90620 0.92387 1.25666 0.95142 0.95634 1.01676 1.69976 1.37392 1.23764 1.24284 0.85554 0.78848 0.78375 0.78904 1.19876 1.20771 1.19636 1.21936 0.96343 0.94594 0.89018 1.21287 1.16517 0.95239 0.99475 1.24225 0.99172 0.97855 0.93216 1.76982 1.24754 0.95821 1.17490 1.48782 1.50739 1.06602 1.09069 1.23276 1.01038 0.75741 0.99102 1.23290 0.96255 0.99673 0.98242 1.22696 0.93579 0.97380 1.01707 1.23311 0.98624 0.99775 0.95993 0.95864 0.91182 0.95131 0.92695 0.84535 0.77273 0.86998 0.89715 0.90328 0.87957 0.88789 0.90228 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.95 71.98 0.64 -4.98 16 2 C 0.10 5.17 2.47 -12.28 -0.03 5.14 16 3 H 0.01 0.66 6.89 -2.39 -0.02 0.64 16 4 C -0.52 -28.55 8.25 25.60 0.21 -28.34 16 5 H 0.06 3.17 6.82 -2.91 -0.02 3.15 16 6 C 0.02 0.97 5.31 84.65 0.45 1.42 16 7 N -0.91 -50.99 11.33 21.45 0.24 -50.75 16 8 Si 0.96 42.90 29.54 68.60 2.03 44.93 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 C 0.11 4.98 5.85 41.40 0.24 5.22 16 13 C -0.30 -12.67 9.70 21.99 0.21 -12.46 16 14 C 0.04 1.48 12.03 85.24 1.03 2.50 16 15 N -0.33 -12.82 12.03 -57.02 -0.69 -13.51 16 16 N -0.37 -15.09 3.68 -311.82 -1.15 -16.24 16 17 C 0.11 3.72 4.55 45.52 0.21 3.93 16 18 C -0.14 -3.72 7.78 31.18 0.24 -3.48 16 19 C -0.12 -2.43 8.09 31.18 0.25 -2.18 16 20 C -0.14 -3.77 7.88 31.12 0.25 -3.52 16 21 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.07 3.67 6.08 -2.38 -0.01 3.66 16 23 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 25 H 0.14 5.81 7.65 -2.91 -0.02 5.79 16 26 H 0.21 5.65 8.06 -2.91 -0.02 5.63 16 27 H 0.11 3.99 6.81 -2.39 -0.02 3.97 16 28 H 0.08 2.50 7.74 -2.38 -0.02 2.48 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 Total: -1.00 -61.09 274.09 5.22 -55.87 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 1.08 Total: 16.44 kcal Atomic # 6 Polarization: -40.45 SS G_CDS: 3.70 Total: -36.75 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -1.59 Total: -80.50 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -61.09 5.22 -55.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261224534.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.464 kcal (2) G-P(sol) polarization free energy of solvation -61.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds