Wall clock time and date at job start Mon Mar 30 2020 20:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47063 * 2 1 4 4 N 1.46505 * 109.47004 * 180.02562 * 3 2 1 5 5 C 1.34500 * 125.68253 * 125.29786 * 4 3 2 6 6 C 1.39277 * 107.18778 * 180.13177 * 5 4 3 7 7 C 1.41600 * 126.55181 * 179.89491 * 6 5 4 8 8 H 1.08001 * 119.99543 * 163.73104 * 7 6 5 9 9 C 1.39698 * 120.00168 * 343.73057 * 7 6 5 10 10 N 1.31023 * 119.99895 * 332.15449 * 9 7 6 11 11 Si 1.86800 * 119.99695 * 152.15316 * 9 7 6 12 12 H 1.48498 * 109.47472 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47086 * 120.00169 * 11 9 7 14 14 H 1.48503 * 109.47051 * 239.99659 * 11 9 7 15 15 C 1.41876 * 106.88806 * 359.63539 * 6 5 4 16 16 C 1.50703 * 125.97806 * 180.26338 * 15 6 5 17 17 C 1.52991 * 117.49982 * 188.61855 * 16 15 6 18 18 C 1.52994 * 117.50089 * 119.99454 * 16 15 6 19 19 N 1.30314 * 108.04731 * 0.22157 * 15 6 5 20 20 H 1.09001 * 109.47162 * 59.99850 * 1 2 3 21 21 H 1.08996 * 109.47288 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47407 * 300.00318 * 1 2 3 23 23 H 1.08999 * 109.47407 * 239.99682 * 2 1 3 24 24 H 1.09003 * 109.47090 * 119.99611 * 2 1 3 25 25 H 1.08995 * 109.47624 * 60.00254 * 3 2 1 26 26 H 1.08994 * 109.46894 * 299.99516 * 3 2 1 27 27 H 1.08004 * 126.39887 * 359.97438 * 5 4 3 28 28 H 0.97001 * 120.00560 * 354.29354 * 10 9 7 29 29 H 1.08999 * 115.54444 * 334.32566 * 16 15 6 30 30 H 1.08997 * 117.50092 * 0.02562 * 17 16 15 31 31 H 1.09005 * 117.50131 * 145.01249 * 17 16 15 32 32 H 1.09005 * 117.50054 * 214.97922 * 18 16 15 33 33 H 1.09003 * 117.50263 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2891 2.0739 -0.8925 6 6 5.6101 1.8160 -0.5343 7 6 6.7704 2.2823 -1.1986 8 1 7.7282 2.2479 -0.7008 9 6 6.6762 2.7868 -2.4979 10 7 5.7273 2.3653 -3.2971 11 14 7.9030 4.0623 -3.0957 12 1 8.8683 4.3680 -2.0095 13 1 8.6355 3.5309 -4.2732 14 1 7.1808 5.3017 -3.4802 15 6 5.5708 1.0019 0.6270 16 6 6.7654 0.4750 1.3797 17 6 6.5075 -0.5493 2.4864 18 6 6.9113 0.8816 2.8474 19 7 4.3211 0.7903 0.9296 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9564 0.8899 26 1 1.6766 1.9562 -0.8900 27 1 3.9565 2.6675 -1.7312 28 1 5.1418 1.6445 -3.0171 29 1 7.6785 0.3653 0.7947 30 1 5.4738 -0.8425 2.6699 31 1 7.2509 -1.3335 2.6297 32 1 7.9204 1.0389 3.2282 33 1 6.1434 1.5306 3.2686 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261225012.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:43:12 Heat of formation + Delta-G solvation = 75.279388 kcal Electronic energy + Delta-G solvation = -14701.103438 eV Core-core repulsion = 12342.451689 eV Total energy + Delta-G solvation = -2358.651750 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.59487 -36.39186 -34.69769 -33.39315 -30.40645 -28.37827 -26.25372 -24.20400 -22.52030 -21.79585 -20.88461 -19.77685 -18.04861 -17.34933 -15.54620 -14.94967 -14.63772 -13.98338 -13.86460 -13.65300 -13.02783 -12.77697 -12.15087 -11.89043 -11.77798 -11.28542 -11.12490 -10.99726 -10.93173 -10.62061 -10.57821 -10.25409 -9.94140 -9.89636 -9.60863 -9.26505 -8.52415 -7.76488 -7.19596 -6.82382 -3.92376 3.16192 3.29382 3.33065 3.51675 3.74126 4.08898 4.30407 4.69095 5.06069 5.18452 5.33466 5.39907 5.44077 5.56863 5.61984 5.77090 5.79521 5.88534 6.06285 6.12161 6.16119 6.30691 6.38819 6.46096 6.56927 6.68859 6.78600 7.29148 7.48952 7.76758 8.24003 8.27204 8.57242 8.99074 9.16868 9.35945 10.48670 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.010293 C = 0.007144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.331367 B = 2719.600455 C = 3918.674508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C 0.151 3.849 4 N -0.381 5.381 5 C -0.118 4.118 6 C -0.012 4.012 7 C -0.520 4.520 8 H 0.067 0.933 9 C 0.038 3.962 10 N -0.839 5.839 11 Si 1.064 2.936 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.280 1.280 15 C 0.035 3.965 16 C -0.043 4.043 17 C -0.179 4.179 18 C -0.174 4.174 19 N -0.313 5.313 20 H 0.054 0.946 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.151 0.849 28 H 0.290 0.710 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.993 -2.194 5.369 7.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.028 3.972 4 N -0.169 5.169 5 C -0.258 4.258 6 C -0.021 4.021 7 C -0.553 4.553 8 H 0.085 0.915 9 C -0.178 4.178 10 N -0.467 5.467 11 Si 0.890 3.110 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.206 1.206 15 C -0.130 4.130 16 C -0.063 4.063 17 C -0.216 4.216 18 C -0.213 4.213 19 N -0.138 5.138 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.168 0.832 28 H 0.103 0.897 29 H 0.132 0.868 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.555 -1.751 4.792 6.840 hybrid contribution 0.004 -0.482 0.566 0.744 sum -4.551 -2.233 5.358 7.376 Atomic orbital electron populations 1.21710 0.95513 1.01673 1.01660 1.21803 0.95231 0.96978 1.03282 1.21274 0.77002 0.97144 1.01751 1.47319 1.03934 1.42853 1.22818 1.22398 0.90699 1.10791 1.01890 1.17951 0.92506 0.97292 0.94381 1.19587 0.94208 1.40917 1.00565 0.91469 1.26564 0.99342 0.98787 0.93144 1.70485 1.16486 1.22554 1.37146 0.83690 0.75467 0.76099 0.75792 1.20578 1.21084 1.20627 1.21233 0.90829 1.01785 0.99180 1.20008 0.96055 1.01523 0.88718 1.22880 1.02218 0.92079 1.04454 1.22895 1.01694 0.98013 0.98683 1.76179 1.02009 1.20829 1.14769 0.92715 0.92602 0.92735 0.91742 0.90969 0.92001 0.90158 0.83220 0.89718 0.86837 0.88707 0.89493 0.89268 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.15 0.37 -1.36 16 2 C -0.13 -2.10 6.11 -26.74 -0.16 -2.26 16 3 C 0.15 2.69 6.49 -4.04 -0.03 2.66 16 4 N -0.38 -8.87 3.65 -60.40 -0.22 -9.09 16 5 C -0.12 -3.07 9.57 -16.00 -0.15 -3.23 16 6 C -0.01 -0.32 5.59 -106.84 -0.60 -0.92 16 7 C -0.52 -14.48 9.06 -37.75 -0.34 -14.82 16 8 H 0.07 1.84 7.98 -52.49 -0.42 1.42 16 9 C 0.04 1.01 5.22 -17.35 -0.09 0.92 16 10 N -0.84 -23.48 12.61 55.54 0.70 -22.78 16 11 Si 1.06 23.23 30.01 -169.99 -5.10 18.13 16 12 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 15 C 0.04 0.89 6.81 -81.84 -0.56 0.33 16 16 C -0.04 -0.90 6.05 -91.78 -0.56 -1.46 16 17 C -0.18 -3.13 10.14 -26.74 -0.27 -3.40 16 18 C -0.17 -3.09 10.23 -26.74 -0.27 -3.37 16 19 N -0.31 -7.61 11.88 33.99 0.40 -7.20 16 20 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.08 1.30 8.06 -51.93 -0.42 0.89 16 27 H 0.15 3.94 6.96 -52.48 -0.37 3.57 16 28 H 0.29 8.30 6.55 -40.82 -0.27 8.03 16 29 H 0.11 2.36 8.14 -51.93 -0.42 1.94 16 30 H 0.09 1.74 7.90 -51.93 -0.41 1.33 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 283.50 15.07 4.27 4.27 Total: -1.00 -30.06 283.50 -7.51 -37.57 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -4.90 Total: 6.00 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: -2.66 Total: -26.91 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.88 Total: -39.07 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -5.10 Total: 18.13 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.06 -7.51 -37.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261225012.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.848 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds