Wall clock time and date at job start Mon Mar 30 2020 20:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47063 * 2 1 4 4 N 1.46505 * 109.47004 * 180.02562 * 3 2 1 5 5 C 1.34500 * 125.68253 * 125.29786 * 4 3 2 6 6 C 1.39277 * 107.18778 * 180.13177 * 5 4 3 7 7 C 1.41600 * 126.55181 * 179.89491 * 6 5 4 8 8 H 1.08001 * 119.99543 * 163.73104 * 7 6 5 9 9 C 1.39698 * 120.00168 * 343.73057 * 7 6 5 10 10 N 1.31023 * 119.99895 * 332.15449 * 9 7 6 11 11 Si 1.86800 * 119.99695 * 152.15316 * 9 7 6 12 12 H 1.48498 * 109.47472 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47086 * 120.00169 * 11 9 7 14 14 H 1.48503 * 109.47051 * 239.99659 * 11 9 7 15 15 C 1.41876 * 106.88806 * 359.63539 * 6 5 4 16 16 C 1.50703 * 125.97806 * 180.26338 * 15 6 5 17 17 C 1.52991 * 117.49982 * 188.61855 * 16 15 6 18 18 C 1.52994 * 117.50089 * 119.99454 * 16 15 6 19 19 N 1.30314 * 108.04731 * 0.22157 * 15 6 5 20 20 H 1.09001 * 109.47162 * 59.99850 * 1 2 3 21 21 H 1.08996 * 109.47288 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47407 * 300.00318 * 1 2 3 23 23 H 1.08999 * 109.47407 * 239.99682 * 2 1 3 24 24 H 1.09003 * 109.47090 * 119.99611 * 2 1 3 25 25 H 1.08995 * 109.47624 * 60.00254 * 3 2 1 26 26 H 1.08994 * 109.46894 * 299.99516 * 3 2 1 27 27 H 1.08004 * 126.39887 * 359.97438 * 5 4 3 28 28 H 0.97001 * 120.00560 * 354.29354 * 10 9 7 29 29 H 1.08999 * 115.54444 * 334.32566 * 16 15 6 30 30 H 1.08997 * 117.50092 * 0.02562 * 17 16 15 31 31 H 1.09005 * 117.50131 * 145.01249 * 17 16 15 32 32 H 1.09005 * 117.50054 * 214.97922 * 18 16 15 33 33 H 1.09003 * 117.50263 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2891 2.0739 -0.8925 6 6 5.6101 1.8160 -0.5343 7 6 6.7704 2.2823 -1.1986 8 1 7.7282 2.2479 -0.7008 9 6 6.6762 2.7868 -2.4979 10 7 5.7273 2.3653 -3.2971 11 14 7.9030 4.0623 -3.0957 12 1 8.8683 4.3680 -2.0095 13 1 8.6355 3.5309 -4.2732 14 1 7.1808 5.3017 -3.4802 15 6 5.5708 1.0019 0.6270 16 6 6.7654 0.4750 1.3797 17 6 6.5075 -0.5493 2.4864 18 6 6.9113 0.8816 2.8474 19 7 4.3211 0.7903 0.9296 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9564 0.8899 26 1 1.6766 1.9562 -0.8900 27 1 3.9565 2.6675 -1.7312 28 1 5.1418 1.6445 -3.0171 29 1 7.6785 0.3653 0.7947 30 1 5.4738 -0.8425 2.6699 31 1 7.2509 -1.3335 2.6297 32 1 7.9204 1.0389 3.2282 33 1 6.1434 1.5306 3.2686 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261225012.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:43:12 Heat of formation + Delta-G solvation = 58.713518 kcal Electronic energy + Delta-G solvation = -14701.821789 eV Core-core repulsion = 12342.451689 eV Total energy + Delta-G solvation = -2359.370100 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.48259 -37.92244 -36.24238 -35.25195 -32.02025 -30.38324 -27.83397 -26.10121 -24.02712 -23.20355 -22.29391 -21.74357 -19.96217 -19.19100 -17.29464 -16.46563 -16.07648 -15.70449 -15.49835 -15.30504 -14.82817 -14.19161 -13.94169 -13.38225 -13.23223 -12.79322 -12.71308 -12.49104 -12.38230 -12.25285 -11.94652 -11.91627 -11.57167 -11.51718 -11.42814 -11.06085 -10.50613 -9.62105 -9.21708 -8.93353 -6.03033 1.25639 1.53304 1.55517 1.83772 2.03386 2.18737 2.47897 3.07614 3.41063 3.68115 3.85023 3.92895 4.03236 4.18326 4.28852 4.40722 4.42484 4.56020 4.60192 4.76561 4.81463 4.95254 5.05603 5.10428 5.15481 5.29777 5.31115 5.33865 5.55246 5.79307 6.11549 6.20449 6.64527 6.94014 7.15178 7.36342 8.35082 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.010293 C = 0.007144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.331367 B = 2719.600455 C = 3918.674508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.125 4.125 3 C 0.138 3.862 4 N -0.381 5.381 5 C -0.120 4.120 6 C -0.054 4.054 7 C -0.546 4.546 8 H 0.062 0.938 9 C -0.003 4.003 10 N -0.858 5.858 11 Si 1.117 2.883 12 H -0.268 1.268 13 H -0.273 1.273 14 H -0.273 1.273 15 C 0.025 3.975 16 C -0.084 4.084 17 C -0.154 4.154 18 C -0.155 4.155 19 N -0.315 5.315 20 H 0.064 0.936 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.142 0.858 28 H 0.274 0.726 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.095 -2.176 6.383 7.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.164 4.164 3 C 0.017 3.983 4 N -0.170 5.170 5 C -0.261 4.261 6 C -0.064 4.064 7 C -0.579 4.579 8 H 0.080 0.920 9 C -0.213 4.213 10 N -0.486 5.486 11 Si 0.937 3.063 12 H -0.192 1.192 13 H -0.199 1.199 14 H -0.198 1.198 15 C -0.141 4.141 16 C -0.104 4.104 17 C -0.191 4.191 18 C -0.193 4.193 19 N -0.140 5.140 20 H 0.083 0.917 21 H 0.088 0.912 22 H 0.087 0.913 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.159 0.841 28 H 0.085 0.915 29 H 0.126 0.874 30 H 0.103 0.897 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.698 -1.755 5.830 7.691 hybrid contribution -0.069 -0.545 0.321 0.636 sum -4.766 -2.300 6.151 8.115 Atomic orbital electron populations 1.21658 0.91989 1.03063 1.02900 1.21711 0.98120 0.94870 1.01654 1.21753 0.74048 0.99150 1.03328 1.47772 1.05755 1.41729 1.21703 1.22353 0.91216 1.10610 1.01891 1.18387 0.93129 0.98819 0.96089 1.19773 0.94302 1.42553 1.01294 0.92023 1.28008 1.00369 0.99824 0.93102 1.70614 1.17563 1.23002 1.37418 0.83002 0.73605 0.73738 0.75993 1.19208 1.19890 1.19798 1.21786 0.92186 1.01224 0.98896 1.20085 0.94654 1.05458 0.90217 1.22945 1.02683 0.92645 1.00858 1.22966 1.03150 0.97916 0.95254 1.76126 1.01958 1.20834 1.15068 0.91650 0.91180 0.91317 0.93623 0.92325 0.90152 0.88764 0.84053 0.91486 0.87406 0.89687 0.86156 0.86090 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.91 71.98 0.71 -2.19 16 2 C -0.12 -3.80 6.11 30.59 0.19 -3.61 16 3 C 0.14 4.81 6.49 86.38 0.56 5.37 16 4 N -0.38 -17.93 3.65 -345.02 -1.26 -19.19 16 5 C -0.12 -6.42 9.57 84.53 0.81 -5.61 16 6 C -0.05 -3.08 5.59 -21.30 -0.12 -3.20 16 7 C -0.55 -31.31 9.06 23.45 0.21 -31.10 16 8 H 0.06 3.47 7.98 -2.91 -0.02 3.45 16 9 C 0.00 -0.15 5.22 85.17 0.44 0.29 16 10 N -0.86 -49.26 12.61 21.79 0.27 -48.99 16 11 Si 1.12 46.92 30.01 68.60 2.06 48.98 16 12 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 13 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 14 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 15 C 0.02 1.26 6.81 43.69 0.30 1.56 16 16 C -0.08 -3.51 6.05 -11.54 -0.07 -3.58 16 17 C -0.15 -5.07 10.14 30.59 0.31 -4.76 16 18 C -0.15 -5.18 10.23 30.59 0.31 -4.87 16 19 N -0.32 -15.41 11.88 -46.36 -0.55 -15.96 16 20 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 21 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.09 2.99 8.06 -2.39 -0.02 2.97 16 27 H 0.14 7.73 6.96 -2.91 -0.02 7.71 16 28 H 0.27 16.32 6.55 -92.71 -0.61 15.71 16 29 H 0.11 4.55 8.14 -2.39 -0.02 4.53 16 30 H 0.08 2.98 7.90 -2.39 -0.02 2.96 16 31 H 0.12 3.16 8.14 -2.38 -0.02 3.14 16 32 H 0.12 3.27 8.14 -2.38 -0.02 3.25 16 33 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -66.54 283.50 5.42 -61.12 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 1.24 Total: 25.76 kcal Atomic # 6 Polarization: -55.37 SS G_CDS: 3.66 Total: -51.71 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -1.54 Total: -84.14 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.06 Total: 48.98 kcal Total: -66.54 5.42 -61.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261225012.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.831 kcal (2) G-P(sol) polarization free energy of solvation -66.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds