Wall clock time and date at job start Mon Mar 30 2020 20:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47725 * 2 1 4 4 C 1.50699 * 109.47226 * 120.00508 * 2 1 3 5 5 H 1.07999 * 120.00090 * 119.99968 * 4 2 1 6 6 C 1.37878 * 119.99923 * 299.99413 * 4 2 1 7 7 N 1.31513 * 119.99657 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47033 * 60.00568 * 8 6 4 10 10 H 1.48503 * 109.47227 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47371 * 300.00359 * 8 6 4 12 12 C 1.50702 * 109.47081 * 240.00353 * 2 1 3 13 13 C 1.38343 * 120.45104 * 298.98819 * 12 2 1 14 14 C 1.38844 * 118.50931 * 179.97438 * 13 12 2 15 15 C 1.38068 * 119.32263 * 359.97438 * 14 13 12 16 16 N 1.31939 * 120.85722 * 0.02562 * 15 14 13 17 17 C 1.32422 * 121.62500 * 0.02562 * 16 15 14 18 18 N 1.39010 * 119.70646 * 180.02562 * 17 16 15 19 19 C 1.46897 * 110.99936 * 297.21923 * 18 17 16 20 20 C 1.46898 * 110.99945 * 61.17699 * 18 17 16 21 21 H 1.08994 * 109.46749 * 299.99826 * 1 2 3 22 22 H 1.08992 * 109.47085 * 60.00019 * 1 2 3 23 23 H 1.09004 * 109.46864 * 179.97438 * 1 2 3 24 24 H 0.96999 * 119.99516 * 179.97438 * 7 6 4 25 25 H 1.08004 * 120.74744 * 359.70984 * 13 12 2 26 26 H 1.07991 * 120.33776 * 179.97438 * 14 13 12 27 27 H 1.08007 * 119.56907 * 180.02562 * 15 14 13 28 28 H 1.08997 * 109.47046 * 59.99934 * 19 18 17 29 29 H 1.08998 * 109.47300 * 180.02562 * 19 18 17 30 30 H 1.09000 * 109.46959 * 300.00257 * 19 18 17 31 31 H 1.09000 * 109.47120 * 54.91305 * 20 18 17 32 32 H 1.09003 * 109.46867 * 174.91341 * 20 18 17 33 33 H 1.08999 * 109.47065 * 294.91499 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3214 -1.1206 4.0078 9 1 3.8065 -1.1212 4.0080 10 1 1.8262 -0.4208 5.2204 11 1 1.8259 -2.5204 4.0076 12 6 2.0323 -0.7103 -1.2305 13 6 1.7211 -2.0406 -1.4483 14 6 2.2047 -2.6551 -2.5956 15 6 2.9757 -1.9263 -3.4793 16 7 3.2567 -0.6585 -3.2458 17 6 2.8151 -0.0374 -2.1628 18 7 3.1350 1.2996 -1.9569 19 6 4.5862 1.4779 -1.8146 20 6 2.6048 2.1404 -3.0385 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7084 1.1607 3.4844 25 1 1.1191 -2.5900 -0.7397 26 1 1.9801 -3.6924 -2.7948 27 1 3.3535 -2.4002 -4.3732 28 1 5.0849 1.1348 -2.7210 29 1 4.8087 2.5327 -1.6541 30 1 4.9416 0.8982 -0.9627 31 1 1.5319 1.9740 -3.1354 32 1 2.7904 3.1894 -2.8075 33 1 3.0986 1.8817 -3.9751 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261225959.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:43:25 Heat of formation + Delta-G solvation = 42.429509 kcal Electronic energy + Delta-G solvation = -15178.392327 eV Core-core repulsion = 12818.316099 eV Total energy + Delta-G solvation = -2360.076227 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.94447 -36.25344 -34.68651 -31.83401 -30.44856 -28.35931 -27.16407 -25.08712 -24.41936 -23.18321 -20.90831 -19.76241 -16.65267 -16.40767 -15.75795 -14.93069 -14.73906 -14.36858 -13.60466 -13.41982 -12.85178 -12.57424 -12.48384 -11.84635 -11.75500 -11.47109 -11.31552 -11.28879 -10.87915 -10.84458 -10.45267 -10.11648 -9.75007 -9.17650 -8.98198 -8.77268 -8.32740 -7.95744 -7.90764 -5.95960 -4.02112 1.72664 2.02470 3.32736 3.37560 3.40268 4.25466 4.37062 4.49520 5.04404 5.34894 5.46992 5.61670 5.70258 5.76891 5.86425 5.89661 5.97874 6.10635 6.21600 6.32726 6.49804 6.70041 6.84427 6.98227 7.08620 7.22203 7.32386 7.40944 7.75837 7.89987 8.13353 8.16129 8.43508 8.53831 9.00155 9.61016 11.09618 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.028416 B = 0.010001 C = 0.008929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.114583 B = 2799.025815 C = 3135.248699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.075 3.925 3 H 0.064 0.936 4 C -0.507 4.507 5 H 0.052 0.948 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.890 3.110 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.278 1.278 12 C -0.044 4.044 13 C -0.074 4.074 14 C -0.180 4.180 15 C 0.073 3.927 16 N -0.518 5.518 17 C 0.266 3.734 18 N -0.477 5.477 19 C 0.034 3.966 20 C 0.034 3.966 21 H 0.087 0.913 22 H 0.006 0.994 23 H 0.023 0.977 24 H 0.260 0.740 25 H 0.135 0.865 26 H 0.123 0.877 27 H 0.141 0.859 28 H 0.032 0.968 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.406 -1.762 -8.793 9.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.056 3.944 3 H 0.082 0.918 4 C -0.545 4.545 5 H 0.070 0.930 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.718 3.282 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.204 1.204 12 C -0.047 4.047 13 C -0.101 4.101 14 C -0.200 4.200 15 C -0.086 4.086 16 N -0.230 5.230 17 C 0.038 3.962 18 N -0.199 5.199 19 C -0.113 4.113 20 C -0.113 4.113 21 H 0.105 0.895 22 H 0.025 0.975 23 H 0.042 0.958 24 H 0.070 0.930 25 H 0.153 0.847 26 H 0.141 0.859 27 H 0.158 0.842 28 H 0.050 0.950 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.622 -0.998 -8.807 9.243 hybrid contribution 0.227 -1.307 0.708 1.503 sum 2.849 -2.305 -8.100 8.890 Atomic orbital electron populations 1.21786 0.97910 0.98829 1.00251 1.17866 0.92229 0.97279 0.86994 0.91825 1.21046 1.31269 1.12146 0.90066 0.93007 1.24903 0.95126 0.94980 0.98688 1.69877 1.36552 1.22750 1.23355 0.86698 0.79230 0.79741 0.82550 1.20362 1.21287 1.20379 1.21403 0.92996 0.93620 0.96699 1.21534 0.97946 0.94658 0.95924 1.22041 1.00748 1.00803 0.96402 1.22146 0.97569 0.89818 0.99040 1.67506 1.22609 1.11289 1.21605 1.19703 0.95986 0.90333 0.90153 1.60016 1.14036 1.02680 1.43192 1.22319 0.86195 1.01853 1.00933 1.22313 1.00226 0.96939 0.91866 0.89479 0.97513 0.95763 0.92966 0.84720 0.85864 0.84154 0.94964 0.91333 0.91194 0.91799 0.91248 0.94924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.80 37.16 0.33 -2.81 16 2 C 0.08 1.89 2.44 -92.92 -0.23 1.66 16 3 H 0.06 1.74 6.92 -51.93 -0.36 1.38 16 4 C -0.51 -13.73 8.25 -34.44 -0.28 -14.02 16 5 H 0.05 1.40 7.58 -52.49 -0.40 1.01 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.01 11.32 55.43 0.63 -24.38 16 8 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 C -0.04 -0.97 4.76 -104.26 -0.50 -1.47 16 13 C -0.07 -1.46 8.83 -39.32 -0.35 -1.81 16 14 C -0.18 -2.97 10.11 -39.42 -0.40 -3.37 16 15 C 0.07 1.22 11.17 -17.57 -0.20 1.02 16 16 N -0.52 -9.95 9.62 -12.43 -0.12 -10.07 16 17 C 0.27 5.53 5.31 -155.01 -0.82 4.71 16 18 N -0.48 -9.33 3.67 -188.98 -0.69 -10.03 16 19 C 0.03 0.59 9.46 60.06 0.57 1.16 16 20 C 0.03 0.56 9.40 60.06 0.56 1.12 16 21 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 22 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 23 H 0.02 0.54 7.52 -51.93 -0.39 0.15 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.13 2.60 7.72 -52.48 -0.41 2.19 16 26 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 27 H 0.14 1.85 8.06 -52.48 -0.42 1.43 16 28 H 0.03 0.53 7.89 -51.93 -0.41 0.12 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.06 1.07 8.11 -51.93 -0.42 0.65 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.03 0.51 8.00 -51.93 -0.42 0.10 16 LS Contribution 276.11 15.07 4.16 4.16 Total: -1.00 -29.17 276.11 -7.24 -36.41 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -4.79 Total: -0.07 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -1.41 Total: -12.15 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.19 Total: -44.48 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.17 -7.24 -36.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261225959.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.838 kcal (2) G-P(sol) polarization free energy of solvation -29.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds