Wall clock time and date at job start Mon Mar 30 2020 20:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47139 * 2 1 4 4 N 1.46507 * 109.47057 * 180.02562 * 3 2 1 5 5 N 1.39877 * 125.67318 * 269.69206 * 4 3 2 6 6 C 1.30322 * 109.23231 * 179.84336 * 5 4 3 7 7 C 1.41885 * 108.04306 * 0.41168 * 6 5 4 8 8 C 1.41594 * 126.55814 * 179.71906 * 7 6 5 9 9 H 1.07998 * 120.00106 * 223.32871 * 8 7 6 10 10 C 1.39699 * 120.00227 * 43.32317 * 8 7 6 11 11 N 1.31024 * 120.00496 * 200.39503 * 10 8 7 12 12 Si 1.86799 * 119.99727 * 20.39271 * 10 8 7 13 13 H 1.48500 * 109.47072 * 84.95048 * 12 10 8 14 14 H 1.48496 * 109.47336 * 204.95340 * 12 10 8 15 15 H 1.48507 * 109.47444 * 324.95156 * 12 10 8 16 16 C 1.34499 * 125.68049 * 89.99636 * 4 3 2 17 17 C 1.50700 * 126.40176 * 359.96685 * 16 4 3 18 18 C 1.53005 * 117.49600 * 195.07051 * 17 16 4 19 19 C 1.53000 * 117.50314 * 126.41238 * 17 16 4 20 20 H 1.08994 * 109.47343 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.47073 * 59.99974 * 1 2 3 22 22 H 1.09000 * 109.47192 * 300.00555 * 1 2 3 23 23 H 1.08997 * 109.47055 * 120.00302 * 2 1 3 24 24 H 1.09004 * 109.47089 * 240.00190 * 2 1 3 25 25 H 1.08995 * 109.47441 * 299.99551 * 3 2 1 26 26 H 1.08997 * 109.47114 * 60.00497 * 3 2 1 27 27 H 1.07997 * 125.98065 * 180.11442 * 6 5 4 28 28 H 0.97001 * 120.00030 * 179.97438 * 11 10 8 29 29 H 1.09009 * 115.55330 * 340.73437 * 17 16 4 30 30 H 1.08991 * 117.50102 * 359.97438 * 18 17 16 31 31 H 1.09002 * 117.49498 * 145.01699 * 18 17 16 32 32 H 1.09001 * 117.50031 * 214.97463 * 19 17 16 33 33 H 1.09003 * 117.49799 * 359.96950 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 7 4.3213 1.4484 1.1353 6 6 5.5710 1.4431 0.7660 7 6 5.6101 1.4430 -0.6523 8 6 6.7703 1.4437 -1.4641 9 1 6.8223 2.0854 -2.3311 10 6 7.8477 0.6143 -1.1433 11 7 9.0410 0.8783 -1.6156 12 14 7.5871 -0.8710 -0.0409 13 1 7.1282 -2.0212 -0.8605 14 1 8.8651 -1.2199 0.6300 15 1 6.5608 -0.5528 0.9841 16 6 4.2891 1.4425 -1.0935 17 6 3.8249 1.4420 -2.5272 18 6 4.8542 1.0893 -3.6028 19 6 4.3731 2.5341 -3.4478 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5139 0.8899 23 1 1.8933 -0.5139 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.6768 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 6.4272 1.4439 1.4242 28 1 9.7892 0.3026 -1.3926 29 1 2.7969 1.1170 -2.6884 30 1 5.8672 0.8581 -3.2736 31 1 4.5034 0.5326 -4.4719 32 1 3.7060 2.9274 -4.2149 33 1 5.0692 3.2534 -3.0163 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261234205.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:43:39 Heat of formation + Delta-G solvation = 88.856180 kcal Electronic energy + Delta-G solvation = -15087.245563 eV Core-core repulsion = 12729.182547 eV Total energy + Delta-G solvation = -2358.063016 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.89180 -36.11325 -34.98908 -32.98091 -30.72814 -29.09046 -26.49286 -24.27779 -21.84871 -21.65603 -21.40122 -19.92156 -18.16819 -17.23026 -15.74898 -14.89509 -14.49018 -14.13159 -14.09843 -13.46154 -12.83594 -12.75275 -12.61845 -12.10708 -11.73938 -11.36058 -11.19121 -11.10995 -10.76714 -10.64297 -10.51258 -10.26607 -10.08570 -9.76052 -9.62680 -9.10685 -8.80053 -7.88616 -6.95016 -6.43017 -3.99484 2.92277 3.24042 3.35976 3.47435 3.57751 4.06374 4.33549 4.80229 5.00657 5.08810 5.25068 5.34280 5.42130 5.56441 5.67116 5.73351 5.82945 5.88411 5.99507 5.99792 6.09644 6.30924 6.32990 6.40223 6.56082 6.84974 7.08346 7.28682 7.48112 7.52785 7.85454 8.31846 8.63928 8.94648 9.03709 9.29445 10.63030 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.027488 B = 0.011060 C = 0.009141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.392753 B = 2531.073519 C = 3062.282250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.146 3.854 4 N -0.380 5.380 5 N -0.324 5.324 6 C 0.011 3.989 7 C -0.037 4.037 8 C -0.458 4.458 9 H 0.088 0.912 10 C 0.090 3.910 11 N -0.849 5.849 12 Si 0.869 3.131 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.240 1.240 16 C -0.008 4.008 17 C -0.069 4.069 18 C -0.177 4.177 19 C -0.177 4.177 20 H 0.055 0.945 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.162 0.838 28 H 0.273 0.727 29 H 0.089 0.911 30 H 0.142 0.858 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.665 -1.150 -0.201 11.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.181 4.181 3 C 0.023 3.977 4 N -0.167 5.167 5 N -0.146 5.146 6 C -0.175 4.175 7 C -0.048 4.048 8 C -0.492 4.492 9 H 0.106 0.894 10 C -0.122 4.122 11 N -0.480 5.480 12 Si 0.694 3.306 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.163 1.163 16 C -0.131 4.131 17 C -0.089 4.089 18 C -0.214 4.214 19 C -0.215 4.215 20 H 0.074 0.926 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.179 0.821 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.160 0.840 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.317 -1.178 0.758 12.396 hybrid contribution 0.511 -0.816 -0.180 0.979 sum -11.806 -1.994 0.578 11.987 Atomic orbital electron populations 1.21693 0.95268 1.01765 1.01738 1.21965 0.95593 0.97354 1.03167 1.21307 0.76964 0.96830 1.02602 1.47490 1.04213 1.61549 1.03414 1.76540 1.02836 1.26599 1.08632 1.24044 0.93596 1.03326 0.96546 1.17962 0.91655 1.04225 0.90940 1.18311 0.95797 1.23214 1.11917 0.89396 1.25596 0.93894 0.97921 0.94757 1.69803 0.99694 1.36057 1.42428 0.86904 0.78497 0.82952 0.82210 1.20188 1.21423 1.16298 1.20451 0.91063 1.14563 0.87005 1.19837 0.96892 1.05025 0.87183 1.23486 1.03374 0.96685 0.97866 1.22882 1.03872 0.93017 1.01746 0.92557 0.92657 0.92642 0.91427 0.91495 0.90344 0.90371 0.82138 0.91724 0.89284 0.84041 0.90527 0.90215 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.16 0.37 -1.17 16 2 C -0.14 -2.01 6.26 -26.73 -0.17 -2.18 16 3 C 0.15 2.33 6.13 -4.04 -0.02 2.31 16 4 N -0.38 -8.09 3.58 -56.22 -0.20 -8.29 16 5 N -0.32 -7.63 12.47 30.97 0.39 -7.24 16 6 C 0.01 0.26 9.01 -16.80 -0.15 0.11 16 7 C -0.04 -0.94 4.73 -106.84 -0.50 -1.45 16 8 C -0.46 -12.25 7.02 -37.76 -0.26 -12.51 16 9 H 0.09 2.47 6.17 -52.49 -0.32 2.15 16 10 C 0.09 2.41 5.47 -17.35 -0.09 2.31 16 11 N -0.85 -23.70 13.94 55.54 0.77 -22.93 16 12 Si 0.87 20.77 27.15 -169.99 -4.61 16.15 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.24 -5.72 5.02 56.52 0.28 -5.43 16 16 C -0.01 -0.19 6.71 -81.04 -0.54 -0.74 16 17 C -0.07 -1.34 5.78 -91.77 -0.53 -1.87 16 18 C -0.18 -3.43 9.61 -26.69 -0.26 -3.68 16 19 C -0.18 -3.23 9.82 -26.69 -0.26 -3.49 16 20 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.08 1.12 7.52 -51.93 -0.39 0.73 16 26 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.16 3.74 7.28 -52.49 -0.38 3.36 16 28 H 0.27 7.10 8.30 -40.82 -0.34 6.76 16 29 H 0.09 1.50 7.70 -51.92 -0.40 1.10 16 30 H 0.14 3.25 4.77 -51.93 -0.25 3.00 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.10 1.95 7.60 -51.93 -0.39 1.56 16 LS Contribution 271.26 15.07 4.09 4.09 Total: -1.00 -29.30 271.26 -6.77 -36.07 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.77 Total: 4.51 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -2.43 Total: -22.36 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.96 Total: -38.46 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.61 Total: 16.15 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.30 -6.77 -36.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234205.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.928 kcal (2) G-P(sol) polarization free energy of solvation -29.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds